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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911861
Clone id YMU001_000010_A12
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGAGCTATACAATTAGCCACTCTCGAAGGAGTTTCTCTGCCTTTANTCAATGGATCTCG
GATCAAATGCTATCATGCTAAAGCTGCCGCTCAAGGGTCTAACCGTGCGACAATCAAGTG
TTGAGCTTCGCCGACTCCTGAACCTTTAAATAACTTCGGAATCACTATCTTCCGCATCTT
GCTGTTCCGTTTTATCTTATCTCTTAGACCCTCTCCTTAGACAGCTCTCCTTCTGCAGAC
TCTCTTAAGCTCATAGGTTTGATTATGGACTTGGATCAACTCTATCCTTTACTCTCTCTG
TCTTCAATCCCTGTCGGTCTTGGACATAACCGAATCTCCTCAATCCTCAATCTCGACTCA
GTTCCTCTTCTCAGTTTTTGCCTCTCAAGTGAATCTCAGTTCTTTGATATGCATAAATGC
CTTTGTATCATTGAGTGGGGTATGTATGAAAGTACTTCGCGTTTTATCTGCCACTGCTCA
TTCTTTCTGAGTACCTCGAAATTATCCATGCTTTCTATTAATCAAGTCTATGTA
■■Homology search results ■■ -
sp_hit_id A5VHF6
Definition sp|A5VHF6|RECF_LACRD DNA replication and repair protein recF OS=Lactobacillus reuteri (strain DSM 20016)
Align length 64
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911861|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A12.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5VHF6|RECF_LACRD DNA replication and repair protein recF OS=...    31   3.3  
sp|Q74M31|RECF_LACJO DNA replication and repair protein recF OS=...    30   7.4  

>sp|A5VHF6|RECF_LACRD DNA replication and repair protein recF
           OS=Lactobacillus reuteri (strain DSM 20016) GN=recF PE=3
           SV=1
          Length = 374

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 500 FEVLRKNEQWQIKREVLSYIPHSMIQRHLCISKN*DSLERQKLRRGTESRLRIEEIRLCP 321
           F++ + NEQ +I++    Y PH    R L   KN  +   Q  +R T   +++ EI L  
Sbjct: 245 FKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNVQAFGSQGQQRTTALSVKLAEIDLMK 304

Query: 320 RPTG 309
             TG
Sbjct: 305 EQTG 308


>sp|Q74M31|RECF_LACJO DNA replication and repair protein recF
           OS=Lactobacillus johnsonii GN=recF PE=3 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 253 IGLIMDLDQLYPLLSLSSIPVGLGHNRISSILN 351
           I L+ +L Q YP+L L  +   L H R SS+LN
Sbjct: 301 IQLVHELTQEYPILLLDDVMSELDHRRQSSLLN 333
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911861|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A12.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******