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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911866
Clone id YMU001_000010_B07
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATGCCTGAAGTCTGATAATTTGGGCTATTGTTTTCCATTGTTCTA
GGTGTGCATCTTGTCCTGTTGCTGCAGGGAGGAGTACATTTCTTATTGAAATTCTTAATG
CAACAATTAGCTGTACTTCATAGCATGGTGGCGGACGGAACGTACGCTCTCTGGTTTACA
AGTAGCGAATTGCATTTTATCGAGGATCGCCAAGATGTGTTGTGCCAAAGGGCACATGTA
TCAAAGCCTCGTGCTCGGTGATCCTGTCAGGATTGGATTAGCTTCTGCATACCTCCAAAG
TAGTTAAATAAGGCACTGCCAGTTGGATTTGGAGTCCATTCCTTGGATTCCTTCTAACCT
TTCTGCAGAGTCTGTTGAGTGGAACCTTTTACAAATTCATTGCATGTTATTTGCAACCAG
ACATATTTATAATCCACATGTATCTCTAATGTCACAATGAGCACTGCTCATGTATTTGCT
CTCCTCACCTGTTTTGATCCC
■■Homology search results ■■ -
sp_hit_id Q14525
Definition sp|Q14525|KT33B_HUMAN Keratin, type I cuticular Ha3-II OS=Homo sapiens
Align length 55
Score (bit) 29.3
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911866|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_B07.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14525|KT33B_HUMAN Keratin, type I cuticular Ha3-II OS=Homo s...    29   9.8  

>sp|Q14525|KT33B_HUMAN Keratin, type I cuticular Ha3-II OS=Homo
           sapiens GN=KRT33B PE=1 SV=3
          Length = 404

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -2

Query: 192 RSSIKCN-----SLLVNQRAYVPSATML*STANCCIKNFNKKCTPPCSNRTRCTP 43
           R+ ++C      SLL ++   +PS     +T N C K      T PC  R+RC P
Sbjct: 346 RARLECEINTYRSLLESEDCKLPSNPC--ATTNACEKPIGSCVTNPCGPRSRCGP 398
tr_hit_id A9B7F5
Definition tr|A9B7F5|A9B7F5_HERA2 XisH protein OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)
Align length 71
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911866|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_B07.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9B7F5|A9B7F5_HERA2 XisH protein OS=Herpetosiphon aurantiacus...    35   2.4  
tr|B7JUN2|B7JUN2_SYNP8 1,4-dihydroxy-2-naphthoate phytyltransfer...    34   3.1  
tr|B4C001|B4C001_9CHRO 1,4-dihydroxy-2-naphthoate phytyltransfer...    34   3.1  
tr|A6ZIJ8|A6ZIJ8_THEAQ Putative uncharacterized protein OS=Therm...    33   7.0  
tr|Q9W7B5|Q9W7B5_XENLA BHLH-WRPW transcription factor ESR-4 (Fra...    33   9.1  
tr|A9WIZ4|A9WIZ4_CHLAA Abortive infection protein OS=Chloroflexu...    33   9.2  
tr|B2QID4|B2QID4_9CHLR Abortive infection protein OS=Chloroflexu...    33   9.2  

>tr|A9B7F5|A9B7F5_HERA2 XisH protein OS=Herpetosiphon aurantiacus
           (strain ATCC 23779 / DSM 785) GN=Haur_0276 PE=4 SV=1
          Length = 144

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 165 VANCILSRIAKMC---CAKGHMYQSLVLGDPVRIGLASAYLQSS*IRHCQLDLESIPWIP 335
           V   IL R+  MC   CA      + +L  P+R  L SAY     +     + ESI WIP
Sbjct: 75  VTQAILGRLDPMCTLYCALDRALFTALLVAPLRDLLRSAYQMRFIVVDATQE-ESIQWIP 133

Query: 336 SNLSAESVEWN 368
           +   A+S+ W+
Sbjct: 134 AQAPAQSLNWS 144


>tr|B7JUN2|B7JUN2_SYNP8 1,4-dihydroxy-2-naphthoate phytyltransferase
           OS=Synechococcus sp. (strain PCC 8801 / RF-1)
           GN=PCC8801_1521 PE=4 SV=1
          Length = 310

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 114 LYFIAWWRTERTLSGLQVANCILSRIAKMCCAKGHMYQSLVLGDPVRIG 260
           ++ IAWW+ E T+ G          I  +CCA G+ YQ    G P R+G
Sbjct: 115 IFLIAWWQKEVTVLG----------IILLCCALGYSYQ----GPPFRLG 149


>tr|B4C001|B4C001_9CHRO 1,4-dihydroxy-2-naphthoate phytyltransferase
           OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_2368 PE=4
           SV=1
          Length = 310

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 114 LYFIAWWRTERTLSGLQVANCILSRIAKMCCAKGHMYQSLVLGDPVRIG 260
           ++ IAWW+ E T+ G          I  +CCA G+ YQ    G P R+G
Sbjct: 115 IFLIAWWQKEVTVLG----------IILLCCALGYSYQ----GPPFRLG 149


>tr|A6ZIJ8|A6ZIJ8_THEAQ Putative uncharacterized protein OS=Thermus
           aquaticus PE=4 SV=1
          Length = 521

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 GDPVRIGLASAYLQSS*IRHCQLDLESIPWIPSNLSAESVEWNL 371
           GDP  + LA      + IRH  L LE + W P+  + E   W +
Sbjct: 235 GDPYHLALAVVSPDGNLIRHLTLSLEEVDWAPNKGAKELALWKV 278


>tr|Q9W7B5|Q9W7B5_XENLA BHLH-WRPW transcription factor ESR-4
           (Fragment) OS=Xenopus laevis PE=2 SV=1
          Length = 236

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 195 WRSSIKCNSLLVNQRAYVPSATML*STANCCI----KNFNKKCTPPCSNRTRCTPRTMEN 28
           W+ S++  SL VNQR  +PSA ++   A   +    KN     +P  S RT C  +  + 
Sbjct: 143 WKDSVQDVSLKVNQRQILPSAPIISRVAGDVLEQSPKNQTSHPSPSSSFRTPCMGQVQQQ 202

Query: 27  NSP 19
             P
Sbjct: 203 TPP 205


>tr|A9WIZ4|A9WIZ4_CHLAA Abortive infection protein OS=Chloroflexus
           aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
           GN=Caur_3265 PE=4 SV=1
          Length = 324

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 222 YQSLVLGDPVRIGLAS------AYLQSS*IRHCQLDLESIPWIPSNLSAESVEWNLLQIH 383
           Y ++   DP ++GLA+       +     I+    ++ +  W+   LSA    W  L I 
Sbjct: 138 YIAIEDSDPAQVGLAALGGVVLVFFPGWLIQGAAEEIVTRGWMLPTLSARYRVWVGLLIS 197

Query: 384 CMLFATRHIYNPHVSLMSQ*ALLMY 458
            + FA  H  NP++S+++   L +Y
Sbjct: 198 SLFFAFMHALNPNMSVLAMINLALY 222


>tr|B2QID4|B2QID4_9CHLR Abortive infection protein OS=Chloroflexus
           sp. Y-400-fl GN=Chy400DRAFT_0659 PE=4 SV=1
          Length = 324

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 222 YQSLVLGDPVRIGLAS------AYLQSS*IRHCQLDLESIPWIPSNLSAESVEWNLLQIH 383
           Y ++   DP ++GLA+       +     I+    ++ +  W+   LSA    W  L I 
Sbjct: 138 YIAIEDSDPAQVGLAALGGVVLVFFPGWLIQGAAEEIVTRGWMLPTLSARYRVWVGLLIS 197

Query: 384 CMLFATRHIYNPHVSLMSQ*ALLMY 458
            + FA  H  NP++S+++   L +Y
Sbjct: 198 SLFFAFMHALNPNMSVLAMINLALY 222