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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911875
Clone id YMU001_000010_C05
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTACCTGCAAGCCAAACAGTAGTATTACCTGCTGGTGTATAAGGCTGAGGTGAGCCGA
TGTCAAATAAGCAGGTTTTGTCCTTCGAAAGTACATCGTTGGTCTTCCTCCATGCTCTGT
CGATTTGGCTTGGTGGACCAAAGCATAACCTGAGCTCTACCGTCTTGTAAGTGCTGTCGT
CCACCTCTGCGGCTGAACTTAAGGCCCATGTCACATAGAGCTCATCGGTGCCAGCTCTTG
TCCCATTAACTTGGGATGAATTCTGAGTCCCTGCAACAGAGACAGTAAGGGCATTAGTCA
GTTGCGAGAATAGAGTTGCACCGTCTGCGTGCAAATTGCCTGACAAAAGCACTACTGCGA
GCAAGGAAGCAATGCAAAGAGAAGATTGATCCATTTTGCCTGTCATGAAGAGAAGCCGGC
AGCTTGGAGCTGATAAATGCGAATAGGGAAGGGATCCGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTG
■■Homology search results ■■ -
sp_hit_id A6TC10
Definition sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Align length 49
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911875|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C05.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine bios...    32   1.6  
sp|O74758|YBE3_SCHPO Uncharacterized protein C17D11.03c OS=Schiz...    30   5.8  

>sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC OS=Klebsiella
           pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
           78578) GN=mnmC PE=3 SV=1
          Length = 662

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = -1

Query: 433 SAPSCRLLFMTGKMDQSSLCIASLLAVVLLSGNLHADGATLFSQLTNAL 287
           SAP CR LFM G +    LC A L A  LL+  + A+   L S    AL
Sbjct: 598 SAPVCRNLFMLGALGSRGLCTAPLSA-ELLAAQMSAEPLPLDSDTLAAL 645


>sp|O74758|YBE3_SCHPO Uncharacterized protein C17D11.03c
           OS=Schizosaccharomyces pombe GN=SPBC17D11.03c PE=2 SV=1
          Length = 213

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 315 VAPSACKLPDKSTTASKEAMQRED*SILPVMKRS 416
           VA SAC  PDK +  +KEAM+    SI P ++ +
Sbjct: 25  VAYSACNRPDKISGIAKEAMEHVGPSIYPKLREA 58
tr_hit_id Q4LEX1
Definition tr|Q4LEX1|Q4LEX1_PHYPA Putative component of high affinity nitrate transporter OS=Physcomitrella patens
Align length 122
Score (bit) 87.0
E-value 4.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911875|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C05.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4LEX1|Q4LEX1_PHYPA Putative component of high affinity nitra...    87   4e-16
tr|A9SPC3|A9SPC3_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|Q4LEX3|Q4LEX3_PHYPA Putative component of high affinity nitra...    84   3e-15
tr|A9SXC2|A9SXC2_PHYPA Predicted protein OS=Physcomitrella paten...    84   3e-15
tr|A7PCQ4|A7PCQ4_VITVI Chromosome chr17 scaffold_12, whole genom...    84   4e-15
tr|A5CB21|A5CB21_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|Q5UBW8|Q5UBW8_WHEAT NAR2.2 OS=Triticum aestivum GN=nar2.2 PE=...    83   8e-15
tr|Q6X678|Q6X678_HORVD NAR2.2 OS=Hordeum vulgare var. distichum ...    80   4e-14
tr|Q9FGS5|Q9FGS5_ARATH Genomic DNA, chromosome 5, TAC clone:K6A1...    79   9e-14
tr|Q9ARM2|Q9ARM2_ARATH Putative component of high affinity nitra...    79   1e-13
tr|Q8S343|Q8S343_CAPAN Putative uncharacterized protein upa10 OS...    78   3e-13
tr|Q8LE73|Q8LE73_ARATH Putative component of high affinity nitra...    77   3e-13
tr|Q6X679|Q6X679_HORVD NAR2.1 OS=Hordeum vulgare var. distichum ...    77   3e-13
tr|Q9SB67|Q9SB67_ARATH Putative uncharacterized protein AT4g2472...    76   1e-12
tr|Q1G2Z1|Q1G2Z1_ARATH Putative uncharacterized protein OS=Arabi...    76   1e-12
tr|Q4LEX2|Q4LEX2_PHYPA Putative component of high affinity nitra...    75   1e-12
tr|A9RML2|A9RML2_PHYPA Predicted protein OS=Physcomitrella paten...    75   1e-12
tr|Q6X677|Q6X677_HORVD NAR2.3 OS=Hordeum vulgare var. distichum ...    74   3e-12
tr|Q5UBW9|Q5UBW9_WHEAT NAR2.1 OS=Triticum aestivum GN=nar2.1 PE=...    73   8e-12
tr|Q7XK12|Q7XK12_ORYSJ Os04g0480200 protein OS=Oryza sativa subs...    72   1e-11
tr|Q01K42|Q01K42_ORYSA OSIGBa0158F13.5 protein OS=Oryza sativa G...    72   1e-11
tr|A2XUP7|A2XUP7_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|Q0VH26|Q0VH26_MAIZE High affinity nitrate transporter OS=Zea ...    69   1e-10
tr|B3H755|B3H755_ARATH Uncharacterized protein At4g24730.1 OS=Ar...    67   6e-10
tr|Q0VH25|Q0VH25_MAIZE High affinity nitrate transporter OS=Zea ...    65   2e-09
tr|B6SZ04|B6SZ04_MAIZE Component of high affinity nitrate transp...    65   2e-09
tr|Q6ZI50|Q6ZI50_ORYSJ Os02g0595900 protein OS=Oryza sativa subs...    63   6e-09
tr|A2X6R3|A2X6R3_ORYSI Putative uncharacterized protein OS=Oryza...    63   6e-09
tr|A4S3I0|A4S3I0_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.099
tr|A3AUW8|A3AUW8_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.84 

>tr|Q4LEX1|Q4LEX1_PHYPA Putative component of high affinity nitrate
           transporter OS=Physcomitrella patens GN=Nar2;3 PE=2 SV=1
          Length = 209

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQ-NSSQVNGTRAGTDELYVTWA 203
           L ++ L+ + LL    HA+G   F+ L++  T+ V  +  N+S +     G D + V W+
Sbjct: 7   LSVSLLVLLALLGAVSHAEGFVSFNSLSSKRTLVVTVSMANNSDIKEVHTGQDSILVNWS 66

Query: 202 LS-SAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGN 26
           ++ SA  + D+  KTVE RLCF   SQ  R WRKT+D L KDKTCL+ I   QPY PAG+
Sbjct: 67  VNASAPAIVDA--KTVETRLCFAKESQTLRGWRKTDDNLKKDKTCLYKI-QRQPYAPAGS 123

Query: 25  TT 20
            T
Sbjct: 124 VT 125


>tr|A9SPC3|A9SPC3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165983 PE=4 SV=1
          Length = 209

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQ-NSSQVNGTRAGTDELYVTWA 203
           L ++ L+ + LL    HA+G   F+ L++  T+ V  +  N+S +     G D + V W+
Sbjct: 7   LSVSLLVLLALLGAVSHAEGFVSFNSLSSKRTLVVTVSMANNSDIKEVHTGQDSILVNWS 66

Query: 202 LS-SAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGN 26
           ++ SA  + D+  KTVE RLCF   SQ  R WRKT+D L KDKTCL+ I   QPY PAG+
Sbjct: 67  VNASAPAIVDA--KTVETRLCFAKESQTLRGWRKTDDNLKKDKTCLYKI-QRQPYAPAGS 123

Query: 25  TT 20
            T
Sbjct: 124 VT 125


>tr|Q4LEX3|Q4LEX3_PHYPA Putative component of high affinity nitrate
           transporter OS=Physcomitrella patens GN=Nar2;1 PE=2 SV=1
          Length = 206

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 47/123 (38%), Positives = 71/123 (57%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELYVTWAL 200
           L +A L+A  +L    HA+G  LFS+L  +L V+ A   +   +   + G D + V WA+
Sbjct: 7   LSVALLIAAAILGLASHAEGQVLFSKLPKSLVVT-ATLPDGKPIGVVKTGEDSILVKWAV 65

Query: 199 SSAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNTT 20
           +++A++  S  KT   +LCF   SQ+ R WR T D L KDKTCL++I + Q YT AG   
Sbjct: 66  NTSAQIPASKVKT---KLCFAVESQLLRGWRATKDDLKKDKTCLYNIAT-QDYTTAGGEV 121

Query: 19  VWL 11
            ++
Sbjct: 122 TYM 124


>tr|A9SXC2|A9SXC2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216690 PE=4 SV=1
          Length = 206

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 47/123 (38%), Positives = 71/123 (57%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELYVTWAL 200
           L +A L+A  +L    HA+G  LFS+L  +L V+ A   +   +   + G D + V WA+
Sbjct: 7   LSVALLIAAAILGLASHAEGQVLFSKLPKSLVVT-ATLPDGKPIGVVKTGEDSILVKWAV 65

Query: 199 SSAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNTT 20
           +++A++  S  KT   +LCF   SQ+ R WR T D L KDKTCL++I + Q YT AG   
Sbjct: 66  NTSAQIPASKVKT---KLCFAVESQLLRGWRATKDDLKKDKTCLYNIAT-QDYTTAGGEV 121

Query: 19  VWL 11
            ++
Sbjct: 122 TYM 124


>tr|A7PCQ4|A7PCQ4_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015965001
           PE=4 SV=1
          Length = 201

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = -1

Query: 370 ASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELYVTWALSSA 191
           A LL  +LLS  L       FS L   L V+ +    + +V   ++G D++ VTW L+ +
Sbjct: 5   AFLLTSLLLSCLLQICSGAYFSSLQRTLIVTAS--PKAGEV--LKSGEDKITVTWGLNQS 60

Query: 190 AEVD-DSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNTTVW 14
                DS YKTV+++LC+ P SQ+DRAWRKT D L+KDKTC   I S QPY  + N+  W
Sbjct: 61  YPAGTDSAYKTVKVKLCYAPISQVDRAWRKTVDHLTKDKTCQHKIVS-QPYKASNNSVEW 119


>tr|A5CB21|A5CB21_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021663 PE=4 SV=1
          Length = 201

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = -1

Query: 370 ASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELYVTWALSSA 191
           A LL  +LLS  L       FS L   L V+ +    + +V   ++G D++ VTW L+ +
Sbjct: 5   AFLLTSLLLSCLLQICSGAYFSSLQRTLIVTAS--PKAGEV--LKSGEDKITVTWGLNQS 60

Query: 190 AEVD-DSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNTTVW 14
                DS YKTV+++LC+ P SQ+DRAWRKT D L+KDKTC   I S QPY  + N+  W
Sbjct: 61  YPAGTDSAYKTVKVKLCYAPISQVDRAWRKTVDHLTKDKTCQHKIVS-QPYKASNNSVEW 119


>tr|Q5UBW8|Q5UBW8_WHEAT NAR2.2 OS=Triticum aestivum GN=nar2.2 PE=2
           SV=1
          Length = 199

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
 Frame = -1

Query: 394 MDQSSLCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELY 215
           M QS L +A L+AV+       A      S+L   +T+ V  + +  QV    AG D + 
Sbjct: 1   MAQSKLVMALLVAVLAAGCCASAGAVAYLSKLP--VTLDVIASPSPGQV--LHAGEDVIT 56

Query: 214 VTWALSSAAEV-DDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYT 38
           VTWAL+++    DD+ YK V++ LC+ P SQ +R WRKT+D L KDKTC F + + QPY 
Sbjct: 57  VTWALNASRPAGDDAAYKNVKVSLCYAPASQKEREWRKTHDDLKKDKTCQFKV-AQQPYA 115

Query: 37  PAG 29
            AG
Sbjct: 116 GAG 118


>tr|Q6X678|Q6X678_HORVD NAR2.2 OS=Hordeum vulgare var. distichum
           GN=nar2.2 PE=2 SV=1
          Length = 201

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
 Frame = -1

Query: 394 MDQSSLCIASLLAVVLLSGNLHADGATLFSQLTNALTVSVAGTQNSSQVNGTRAGTDELY 215
           M +S L +A L+AV+       A      S+LT  +T+ V  +    QV    AG D + 
Sbjct: 1   MARSDLVMALLVAVLAAGCCASAGAVAYLSKLT--VTLDVTASPTPGQV--LHAGEDVIT 56

Query: 214 VTWALSSAAEV-DDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPY 41
           VTWAL++     DD+ YK+V++ LC+ P SQ +R WRKT+D L KDKTC F + + QPY
Sbjct: 57  VTWALNATRPAGDDAAYKSVKVSLCYAPASQKEREWRKTHDDLKKDKTCQFKV-TQQPY 114


>tr|Q9FGS5|Q9FGS5_ARATH Genomic DNA, chromosome 5, TAC clone:K6A12
           (Putative component of high affinity nitrate
           transporter) OS=Arabidopsis thaliana GN=nar2.1 PE=2 SV=1
          Length = 210

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTN-ALTVSVAGTQNSSQVNGTRAGTDELYVTWA 203
           +  ASLL   L+     A+   LF +L   AL V+   ++    V    AG D L +TW 
Sbjct: 6   ILFASLLICSLIQSIHGAEKVRLFKELDKGALDVTTKPSREGPGVV-LDAGKDTLNITWT 64

Query: 202 LSSAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNT 23
           LSS     ++ +K ++++LC+ PPSQ+DR WRKT+D L KDKTC   I   +PY     +
Sbjct: 65  LSSIGSKREAEFKIIKVKLCYAPPSQVDRPWRKTHDELFKDKTCPHKI-IAKPYDKTLQS 123

Query: 22  TVW 14
           T W
Sbjct: 124 TTW 126


>tr|Q9ARM2|Q9ARM2_ARATH Putative component of high affinity nitrate
           transporter OS=Arabidopsis thaliana GN=nar2.2 PE=2 SV=1
          Length = 210

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
 Frame = -1

Query: 379 LCIASLLAVVLLSGNLHADGATLFSQLTN-ALTVSVAGTQNSSQVNGTRAGTDELYVTWA 203
           +  ASLL   L+     A+   LF +L   AL V+   ++    V    AG D L +TW 
Sbjct: 6   ILFASLLICSLIQSIHGAEKLRLFKELDKGALDVTTKPSREGPGVV-LDAGKDTLNITWT 64

Query: 202 LSSAAEVDDSTYKTVELRLCFGPPSQIDRAWRKTNDVLSKDKTCLFDIGSPQPYTPAGNT 23
           LSS     ++ +K ++++LC+ PPSQ+DR WRKT+D L KDKTC   I   +PY     +
Sbjct: 65  LSSIGSKREAEFKIIKVKLCYAPPSQVDRPWRKTHDELFKDKTCPHKI-IAKPYDKTLQS 123

Query: 22  TVW 14
           T W
Sbjct: 124 TTW 126