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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911876
Clone id YMU001_000010_C06
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCGGCCGCAGGAGAGTACTTGAGATGGGCGAGAAAATGGAGGCCAAGAATGATGATGTT
GCTATCCAACATGAGAAGGCTGAAGGTAGGCATGGTTGCACGCTTGCCCACATATTATTG
ACATACAGACGCAAGCACTTTGAGAAGGCCTTCAAGAAGTGGAGTGCTCGGATCAAATCC
ACACATGAACCCGAAGAGCAACCCCATTTTTCTTGTACGGCACGACGCTTGTTGTACAGG
TTCGACATCTTTAATTGACAAATTAAGAATGTAGTAGGATACACTAATCTTGTTCTATGC
AAATGAAAACATTGTGGTCTGTCTTGTAGATGGTGGAGAGATGCTCTTGTCTTTCCCATT
CCCGAGCACCCCAATGATGCATGGTGCAGGTCGGAGAGAGAGGAGACGGGCTTATATCCT
AACGAGTGGATAGATGACTTGCGGCCAAAGGGAGCGTGGCTCAAGTGTCCTTGGTGGCTG
GACTACCCGGACAAGGAGTACCCACCGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id Q9USS7
Definition sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe
Align length 107
Score (bit) 34.3
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911876|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C06.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosac...    34   0.35 
sp|Q640L5|CCD18_MOUSE Coiled-coil domain-containing protein 18 O...    32   1.8  
sp|Q4QLT2|PRMA_HAEI8 Ribosomal protein L11 methyltransferase OS=...    30   6.5  
sp|P47114|YJ24_YEAST Uncharacterized vacuolar membrane protein Y...    30   8.7  
sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=...    30   8.7  
sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor ...    30   8.7  

>sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c
           OS=Schizosaccharomyces pombe GN=SPBC4.03c PE=2 SV=1
          Length = 891

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 30/107 (28%), Positives = 52/107 (48%)
 Frame = -3

Query: 326 SPPSTRQTTMFSFA*NKISVSYYILNLSIKDVEPVQQASCRTRKMGLLFGFMCGFDPSTP 147
           +P   R+  + ++     S SY  ++L+I  VEP+     +     +  G +   D S  
Sbjct: 598 TPSGERRVRVVNYCCAVTSKSYDTISLAI--VEPIVAVLAKIASTNIAAGSLK--DTSVR 653

Query: 146 LLEGLLKVLASVCQ*YVGKRATMPTFSLLMLDSNIIILGLHFLAHLK 6
           L+EG++K+L+S    Y    A   T   L+L  N+++L +  LA LK
Sbjct: 654 LVEGVVKILSS----YRKVAANRLTPGQLVLPKNLVLLPILILAVLK 696


>sp|Q640L5|CCD18_MOUSE Coiled-coil domain-containing protein 18
           OS=Mus musculus GN=Ccdc18 PE=2 SV=1
          Length = 1455

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = -1

Query: 421 SIHSLGYKPVSSLSDLHHASLGCSGMGKTRASLHHLQDRPQCFHLHRTRLVYPTTFLICQ 242
           S+H+LG + +SS+S   ++   CS     R  L  L         H  RL+YP    +C+
Sbjct: 37  SLHNLG-EELSSVSPSENSEYVCSPSRSERLILEELTQPS-----HLGRLIYPPYKKVCK 90

Query: 241 LKMSNLYNKRRAVQEKWGCSS--GSCVDLIRALHFLKAFSKCL 119
              S  Y K+   Q  +   S      +L   LH L+  + CL
Sbjct: 91  TSDSTDYQKKSRDQVSFSSVSMDQEVKNLREKLHKLRQQNACL 133


>sp|Q4QLT2|PRMA_HAEI8 Ribosomal protein L11 methyltransferase
           OS=Haemophilus influenzae (strain 86-028NP) GN=prmA PE=3
           SV=1
          Length = 295

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 381 EREETGLYPNEWIDDLRP----KGAWLKCPWWLDYPDK 482
           E+ E   +  EW+D+  P    K  W+ CP W D PDK
Sbjct: 88  EQIEDKDWEREWMDNFHPMQFGKRLWI-CPSWRDVPDK 124


>sp|P47114|YJ24_YEAST Uncharacterized vacuolar membrane protein
           YJR054W OS=Saccharomyces cerevisiae GN=YJR054W PE=1 SV=1
          Length = 497

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 145 FLKAFSKCLRLYVNNMWAS--VQPCLPSAFSCWIATSSFLASI 23
           F+     C++L   N W++  ++P LP   S W+ +   LASI
Sbjct: 49  FVSDIYTCIKLLAFNSWSNNIIKPYLPFKISKWLFSGCILASI 91


>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial
           OS=Homo sapiens GN=TXNRD2 PE=1 SV=3
          Length = 524

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 24/99 (24%), Positives = 37/99 (37%)
 Frame = -1

Query: 436 FGRKSSIHSLGYKPVSSLSDLHHASLGCSGMGKTRASLHHLQDRPQCFHLHRTRLVYPTT 257
           FG  S +      P +  + L +   GC G+ +  A   H Q+  + +H H      P  
Sbjct: 383 FGGSSDLMDYDNVPTTVFTPLEY---GCVGLSEEEAVARHGQEHVEVYHAH----YKPLE 435

Query: 256 FLICQLKMSNLYNKRRAVQEKWGCSSGSCVDLIRALHFL 140
           F +     S  Y K   ++E           L+  LHFL
Sbjct: 436 FTVAGRDASQCYVKMVCLREP--------PQLVLGLHFL 466


>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1
           OS=Mus musculus GN=Pear1 PE=1 SV=1
          Length = 1034

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -2

Query: 225 CTTSVVPYKKNGVALRVHVWI*SEHSTS*RPSQSACVCMSIICGQACNHAYLQPSH-VG* 49
           CT  + P  + G++ +       EHS S  P    C C     G  CN +  Q +H  G 
Sbjct: 343 CTERLCPDGRYGLSCQEPCTCDPEHSLSCHPMHGECSCQPGWAGLHCNESCPQDTHGPGC 402

Query: 48  QHH 40
           Q H
Sbjct: 403 QEH 405
tr_hit_id Q6GMF9
Definition tr|Q6GMF9|Q6GMF9_DANRE Zgc:91964 OS=Danio rerio
Align length 68
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911876|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C06.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6GMF9|Q6GMF9_DANRE Zgc:91964 OS=Danio rerio GN=zgc:91964 PE=...    35   2.8  
tr|Q4RWZ6|Q4RWZ6_TETNG Chromosome 11 SCAF14979, whole genome sho...    35   2.8  
tr|Q1LXG5|Q1LXG5_DANRE Novel protein OS=Danio rerio GN=DKEY-102C...    35   2.8  
tr|Q1LXG4|Q1LXG4_DANRE Novel protein (Fragment) OS=Danio rerio G...    35   2.8  
tr|A6PUG6|A6PUG6_9BACT Putative uncharacterized protein OS=Victi...    34   4.8  

>tr|Q6GMF9|Q6GMF9_DANRE Zgc:91964 OS=Danio rerio GN=zgc:91964 PE=2
           SV=1
          Length = 515

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +3

Query: 255 NVVGYTNLVLCK*KHCGLSCRWWRDALVFPIPEHPNDAWCRSEREETGLYPNEWIDDLRP 434
           ++   TN +LCK  H G++C+           E+ +D   R++ +E      E +D L  
Sbjct: 397 DICNETNCLLCKAIHKGMNCK-----------EYQDDLRVRAQNDEAARQTTEMLDQLLK 445

Query: 435 KGAWLKCP 458
            G  + CP
Sbjct: 446 NGEAMNCP 453


>tr|Q4RWZ6|Q4RWZ6_TETNG Chromosome 11 SCAF14979, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00027629001 PE=4 SV=1
          Length = 501

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 264 GYTNLVLCK*KHCGLSCRWWRDALVFPIPEHPNDAWCRSEREETGLYPNEWIDDLRPKGA 443
           G  N +LC+  H G++C+ ++D           D   R+E   T L   + +D L   G 
Sbjct: 386 GENNCILCRAIHNGMNCKDYQD-----------DLRIRAENNMTALQTKQMLDRLLQNGE 434

Query: 444 WLKCP 458
            +KCP
Sbjct: 435 AMKCP 439


>tr|Q1LXG5|Q1LXG5_DANRE Novel protein OS=Danio rerio
           GN=DKEY-102C8.8-001 PE=4 SV=1
          Length = 510

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +3

Query: 255 NVVGYTNLVLCK*KHCGLSCRWWRDALVFPIPEHPNDAWCRSEREETGLYPNEWIDDLRP 434
           ++   TN +LCK  H G++C+           E+ +D   R++ +E      E +D L  
Sbjct: 392 DICNETNCLLCKAIHKGMNCK-----------EYQDDLRVRAQNDEAARQTTEMLDQLLK 440

Query: 435 KGAWLKCP 458
            G  + CP
Sbjct: 441 NGEAMNCP 448


>tr|Q1LXG4|Q1LXG4_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=DKEY-102C8.8-003 PE=4 SV=1
          Length = 172

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +3

Query: 255 NVVGYTNLVLCK*KHCGLSCRWWRDALVFPIPEHPNDAWCRSEREETGLYPNEWIDDLRP 434
           ++   TN +LCK  H G++C+           E+ +D   R++ +E      E +D L  
Sbjct: 58  DICNETNCLLCKAIHKGMNCK-----------EYQDDLRVRAQNDEAARQTTEMLDQLLK 106

Query: 435 KGAWLKCP 458
            G  + CP
Sbjct: 107 NGEAMNCP 114


>tr|A6PUG6|A6PUG6_9BACT Putative uncharacterized protein
           OS=Victivallis vadensis ATCC BAA-548 GN=VvadDRAFT_0417
           PE=4 SV=1
          Length = 419

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 330 ALVFPIPEHPNDAWCRSEREETGLYPNEWIDDLRPKGAWLKCP 458
           A+   +P+H  DAWC+ E+ E    P+ +I  +    AWLK P
Sbjct: 145 AVAVDLPQHEIDAWCQIEKVER--KPDHFIIHVSILNAWLKAP 185