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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911878
Clone id YMU001_000010_C09
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTAGAAGTCTACACACGGTTTGACTATCTTCTTGAGAAGAGGTAAGGACATCTCTGGTT
GTTATACTGTCTCTTTCAACTCATCTGAGTGATAAAATTTAGGAAATCAGATGTGAGGAG
CCTCTATTGACATAGGAGGTTTTTGGATACTACTTTGCAGGAGGTAATCCAATGGCTCTG
CGACAGATGGGAGTACTCCTGAGGGATTTGGAGTTGCTGAGACAAGGAGGTACCCACATC
CTCTGGTTCCTCTATTGCATCAGCTAATTTCTCCACATCAATCCCTGTTCCATGCTCTTC
CATTGTCTCAAGAGGAGGAGGTAGCCCTTGGATTTTTTCGACTTTTAACAACCGTGTTCA
AAGCTCTGCTACCTCCTTCATGAGTGCCCAATCGTGTCATCCTGGCCTTGGCTTCTTCTG
TCTGGCTTTCCTTGTTTCGGAGGACGTTTACGGCAGATTGCTGAGTACCTGCAGGTAATA
TCTC
■■Homology search results ■■ -
sp_hit_id P83097
Definition sp|P83097|WSCK_DROME Putative tyrosine-protein kinase Wsck OS=Drosophila melanogaster
Align length 43
Score (bit) 32.7
E-value 0.88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911878|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C09.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P83097|WSCK_DROME Putative tyrosine-protein kinase Wsck OS=Dr...    33   0.88 
sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=1      33   0.88 
sp|Q07563|COHA1_MOUSE Collagen alpha-1(XVII) chain OS=Mus muscul...    33   0.88 
sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2      32   1.2  
sp|Q9JMH4|COHA1_MESAU Collagen alpha-1(XVII) chain OS=Mesocricet...    31   2.6  
sp|O70310|NMT1_MOUSE Glycylpeptide N-tetradecanoyltransferase 1 ...    31   2.6  
sp|P31717|NMT1_BOVIN Glycylpeptide N-tetradecanoyltransferase 1 ...    31   2.6  
sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidul...    31   3.4  
sp|Q5RAF3|NMT1_PONAB Glycylpeptide N-tetradecanoyltransferase 1 ...    30   5.7  
sp|P30419|NMT1_HUMAN Glycylpeptide N-tetradecanoyltransferase 1 ...    30   5.7  
sp|Q5U2P2|IGS11_RAT Immunoglobulin superfamily member 11 OS=Ratt...    30   7.5  
sp|P0C673|IGS11_MOUSE Immunoglobulin superfamily member 11 OS=Mu...    30   7.5  
sp|O49621|MLO1_ARATH MLO-like protein 1 OS=Arabidopsis thaliana ...    30   7.5  
sp|Q4V7A4|FSCB_RAT Fibrous sheath CABYR-binding protein OS=Rattu...    29   9.8  

>sp|P83097|WSCK_DROME Putative tyrosine-protein kinase Wsck
           OS=Drosophila melanogaster GN=Wsck PE=2 SV=2
          Length = 791

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 231 TSLSQQLQIPQEYSHLSQSHWITSCKVVSKNLLCQ*RLLTSDF 103
           TSLS+QL +   Y   S  ++++SC+VV + L      +TSDF
Sbjct: 596 TSLSEQLVLQWIYELASAMNYLSSCQVVHRQLCSHSVFVTSDF 638


>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=1
          Length = 1037

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +2

Query: 8   VYTRFDYLLEKR*GHLWL--LYCLFQLI*VIKFRKSDVRS--LY*HRRFLDTTLQEVIQW 175
           V  + DY L+ +    WL  L CL+QL+   +++K++ R   +   + FL    Q+++Q 
Sbjct: 130 VVDKIDYYLQSQSSASWLGSLLCLYQLVKTYEYKKAEEREPLIIAMQIFLPRIQQQIVQL 189

Query: 176 LCDRWEYS 199
           L D   YS
Sbjct: 190 LPDSSYYS 197


>sp|Q07563|COHA1_MOUSE Collagen alpha-1(XVII) chain OS=Mus musculus
           GN=Col17a1 PE=2 SV=3
          Length = 1470

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = -1

Query: 457 SAVNVLRNKESQTEEAKARMTRLGTHEGGSRALNTVVKSRKNPRATSSS*DNGRAWNRD 281
           S  + L N    T E KA MTR GT+EG S   ++    RK     +SS   GR+  R+
Sbjct: 85  SPASTLPNSPGSTFERKAHMTRHGTYEGSSSGNSSPEYPRKE---LASSSTRGRSQTRE 140


>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2
          Length = 1010

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +2

Query: 8   VYTRFDYLLEKR*GHLWL--LYCLFQLI*VIKFRKSDVRS--LY*HRRFLDTTLQEVIQW 175
           V  + DY L+      WL  L CL+QL+   +++K++ R   L   + FL    Q+++Q 
Sbjct: 130 VVDKIDYYLQSPNSGSWLGSLLCLYQLVKTYEYKKAEEREPLLAAMQIFLPRIQQQILQL 189

Query: 176 LCDRWEYS 199
           L D   YS
Sbjct: 190 LPDASHYS 197


>sp|Q9JMH4|COHA1_MESAU Collagen alpha-1(XVII) chain OS=Mesocricetus
           auratus GN=COL17A1 PE=2 SV=1
          Length = 1431

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -1

Query: 457 SAVNVLRNKESQTEEAKARMTRLGTHEGGSRALNTVVKSRKNPRATSSS*DNGRAWNRD 281
           S  + L N    T E K  MTR GT+EG S   ++    RK     +SS   GR+  R+
Sbjct: 85  SPASTLPNSPGSTFERKTHMTRHGTYEGSSSGNSSPEYPRKE---LASSATRGRSQTRE 140


>sp|O70310|NMT1_MOUSE Glycylpeptide N-tetradecanoyltransferase 1
           OS=Mus musculus GN=Nmt1 PE=1 SV=1
          Length = 496

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 VPLLHQLISPHQSLFHALPLSQEEEVALGFF 338
           +P++HQL+S +   FH  P+  +EEV   F+
Sbjct: 346 IPVVHQLLSRYLKQFHLTPVMNQEEVEHWFY 376


>sp|P31717|NMT1_BOVIN Glycylpeptide N-tetradecanoyltransferase 1
           OS=Bos taurus GN=NMT1 PE=1 SV=2
          Length = 497

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 VPLLHQLISPHQSLFHALPLSQEEEVALGFF 338
           +P++HQL+S +   FH  P+  +EEV   F+
Sbjct: 346 IPVVHQLLSRYLKQFHLTPVMSQEEVEHWFY 376


>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans
           GN=rad5 PE=3 SV=1
          Length = 1202

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -2

Query: 357 TRLLKVEKIQGLPPPLETMEEHGTGIDVEKLADAIEEP 244
           T LL  E+    P PL T  E GTG   E  AD++ EP
Sbjct: 149 TTLLSCERNASRPSPLHTSREQGTG-PAENGADSVTEP 185


>sp|Q5RAF3|NMT1_PONAB Glycylpeptide N-tetradecanoyltransferase 1
           OS=Pongo abelii GN=NMT1 PE=2 SV=1
          Length = 496

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 VPLLHQLISPHQSLFHALPLSQEEEVALGFF 338
           +P++HQL++ +   FH  P+  +EEV   F+
Sbjct: 346 IPVVHQLLTRYLKQFHLTPVMSQEEVEHWFY 376


>sp|P30419|NMT1_HUMAN Glycylpeptide N-tetradecanoyltransferase 1
           OS=Homo sapiens GN=NMT1 PE=1 SV=2
          Length = 496

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 VPLLHQLISPHQSLFHALPLSQEEEVALGFF 338
           +P++HQL++ +   FH  P+  +EEV   F+
Sbjct: 346 IPVVHQLLTRYLKQFHLTPVMSQEEVEHWFY 376
tr_hit_id A7JJB1
Definition tr|A7JJB1|A7JJB1_FRANO Predicted protein OS=Francisella novicida GA99-3549
Align length 66
Score (bit) 36.2
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911878|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C09.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7JJB1|A7JJB1_FRANO Predicted protein OS=Francisella novicida...    36   0.82 
tr|A0D5H9|A0D5H9_PARTE Chromosome undetermined scaffold_387, who...    33   5.3  
tr|A6WRN6|A6WRN6_SHEB8 Transcriptional regulator, LysR family OS...    33   7.0  
tr|Q5KPP4|Q5KPP4_CRYNE Ubiquitin carboxyl-terminal hydrolase 2, ...    33   7.0  
tr|Q560P6|Q560P6_CRYNE Ubiquitin carboxyl-terminal hydrolase OS=...    33   7.0  
tr|A7SM40|A7SM40_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.1  
tr|Q59TL3|Q59TL3_CANAL Potential clathrin-associated protein AP-...    33   9.1  
tr|A7R2X9|A7R2X9_VITVI Chromosome undetermined scaffold_463, who...    33   9.2  

>tr|A7JJB1|A7JJB1_FRANO Predicted protein OS=Francisella novicida
           GA99-3549 GN=FTCG_01014 PE=4 SV=1
          Length = 606

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = -2

Query: 402 G*HDWALMKEVAEL*TRLLKVEKIQGLPPPLETMEEHGTGIDVEKLADAIEEPEDVGTSL 223
           G +D    KE+ EL   +L++EKIQ L   ++T +  G    + KL   +E  +D+ T  
Sbjct: 540 GNNDMESRKEIDELKFLILEIEKIQPLKVSMDTSKPKGLTKSILKLKAQLESDDDLSTDD 599

Query: 222 SQQLQI 205
            ++ QI
Sbjct: 600 EEEWQI 605


>tr|A0D5H9|A0D5H9_PARTE Chromosome undetermined scaffold_387, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00039279001 PE=4 SV=1
          Length = 1387

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
 Frame = -2

Query: 396 HDWALMKEVAEL*TRLLKVEKIQGLPPPLE-----TMEEHGTGI-DVEKLADA-IEEPED 238
           H+  +  ++ EL + L   EKIQ +   ++     T EE    I D++K+ +  IE  +D
Sbjct: 581 HNLQIPDQIIELNSLLNVAEKIQNIANKIKNNQSYTFEELEQSIKDIDKIQNINIERSQD 640

Query: 237 VGTSLSQQLQIPQEYSHLSQSHWITSCKVVSKNLL 133
           V     + LQI  E   +SQS  I + +VV +N+L
Sbjct: 641 VEIRYHECLQIQNEIQEISQSQ-IKTKEVVVQNIL 674


>tr|A6WRN6|A6WRN6_SHEB8 Transcriptional regulator, LysR family
           OS=Shewanella baltica (strain OS185) GN=Shew185_3348
           PE=4 SV=1
          Length = 297

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
 Frame = +2

Query: 287 VPCSSIVSRGGGSPWIFSTFNNRVQSSAT---------SFMSAQSCHPGLGFFCL 424
           +PC S     GG+PWIF T + R   S            F++  S   GLGF  L
Sbjct: 188 IPCISSYKAFGGNPWIFQTSDKRSTQSLEVESKVNVDGGFIAKASAMRGLGFVAL 242


>tr|Q5KPP4|Q5KPP4_CRYNE Ubiquitin carboxyl-terminal hydrolase 2,
           putative OS=Cryptococcus neoformans GN=CNA02030 PE=4
           SV=1
          Length = 1358

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
 Frame = -2

Query: 348 LKVEKIQGLPPPLETMEEHGTGI-------DVEKLADAIEEPEDVGTSL----SQQLQIP 202
           LK++   GLPP L++MEE    +       D+E    A E+  D    L    + +L  P
Sbjct: 213 LKIKAGHGLPPGLQSMEEWEASVIEQKAYPDIESFEKAREQRRDEWARLVGIQNSRLVAP 272

Query: 201 QEYSHLSQ 178
           QE+ H  Q
Sbjct: 273 QEHHHFHQ 280


>tr|Q560P6|Q560P6_CRYNE Ubiquitin carboxyl-terminal hydrolase
           OS=Cryptococcus neoformans GN=CNBA1940 PE=3 SV=1
          Length = 1505

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
 Frame = -2

Query: 348 LKVEKIQGLPPPLETMEEHGTGI-------DVEKLADAIEEPEDVGTSL----SQQLQIP 202
           LK++   GLPP L++MEE    +       D+E    A E+  D    L    + +L  P
Sbjct: 272 LKIKAGHGLPPGLQSMEEWEASVIEQKAYPDIESFEKAREQRRDEWARLVGIQNSRLVAP 331

Query: 201 QEYSHLSQ 178
           QE+ H  Q
Sbjct: 332 QEHHHFHQ 339


>tr|A7SM40|A7SM40_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g123343 PE=4 SV=1
          Length = 265

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -1

Query: 232 YLLVSATPNPSGVLPSVAEPLDYLLQSSIQKPPM---SIEAPHI*FPKFYHSDELKETV* 62
           YL++S+  +P  +LPSVA P  YL+  S+  P +   S+ +P++  P       +  +V 
Sbjct: 39  YLMLSSVASPYLMLPSVASP--YLMLPSVASPYLMLPSVASPYLMLPSVASPYLMLPSVA 96

Query: 61  QPEMSLP 41
            P + LP
Sbjct: 97  SPYLMLP 103


>tr|Q59TL3|Q59TL3_CANAL Potential clathrin-associated protein AP-3
           complex component OS=Candida albicans GN=APL6 PE=4 SV=1
          Length = 771

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = -2

Query: 465 LSNLP*TSSETRKARQKKPRP-G*HDWALMKEVAEL*TRLLKVEKIQGLPPPLETMEEHG 289
           L N+  TSS T + + K P P G H ++  ++ A+    L +VEK Q     L++++E  
Sbjct: 656 LGNVSFTSSSTSREKTKSPSPVGEHSFS-SQQFAQQRELLSQVEKKQTSKYKLQSLDEFF 714

Query: 288 TGIDVEKLADAIEEPEDVGTSLSQQLQIPQE 196
              D +  + + EE E+    +S++++  ++
Sbjct: 715 GSEDDDSSSSSSEEEEEEEEEVSEEVESDED 745


>tr|A7R2X9|A7R2X9_VITVI Chromosome undetermined scaffold_463, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013337001 PE=4 SV=1
          Length = 460

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +3

Query: 285 LFHALPLSQEEEVALGFFRLLTTVFKALLPPS*VPNRVI 401
           LF AL   +EE + LGF  LL TVF+ L+    VP  V+
Sbjct: 31  LFQALQKVKEELMLLGFISLLLTVFQNLITKFCVPKHVV 69