BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911892|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_E02.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93TM7|HPRK_LACBA HPr kinase/phosphorylase OS=Lactobacillus b...    32   2.1  
sp|Q3IQT8|RS4_NATPD 30S ribosomal protein S4P OS=Natronomonas ph...    31   2.8  
sp|Q89AB3|EX5B_BUCBP Exodeoxyribonuclease V beta chain OS=Buchne...    30   6.1  
sp|O31542|YFND_BACSU Uncharacterized protein yfnD OS=Bacillus su...    30   8.0  
sp|Q9DC48|PRP17_MOUSE Pre-mRNA-processing factor 17 OS=Mus muscu...    30   8.0  
sp|O60508|PRP17_HUMAN Pre-mRNA-processing factor 17 OS=Homo sapi...    30   8.0  

>sp|Q93TM7|HPRK_LACBA HPr kinase/phosphorylase OS=Lactobacillus
           brevis (strain ATCC 367 / JCM 1170) GN=hprK PE=3 SV=1
          Length = 311

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 5   VVPSETVQSTPADVSTPASNLDAKTQVSESAKTG*QPLGHFQYEP 139
           V  +E V++   DV T   NLD K   S+ ++ G +  G+F Y P
Sbjct: 5   VTVAELVKANRLDVYTGKDNLDRKITTSDISRPGLELTGYFNYYP 49


>sp|Q3IQT8|RS4_NATPD 30S ribosomal protein S4P OS=Natronomonas
           pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3
           SV=1
          Length = 174

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 375 SLGSNTFFYTTRA*DFQGKKALFLGNILK*YKHISHRILW 256
           +LGSNT FY T    FQG++    G++L  Y  ++   LW
Sbjct: 2   ALGSNTKFYETPNHPFQGERIAEEGDLLSRYGLVNKEELW 41


>sp|Q89AB3|EX5B_BUCBP Exodeoxyribonuclease V beta chain OS=Buchnera
           aphidicola subsp. Baizongia pistaciae GN=recB PE=3 SV=1
          Length = 1180

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 3   MWCLLKLFNQHQLMSLLQQAILTPRLKSVNLPKLVS---NHWVIFSMSQEVSILYIIWPN 173
           +W L  + N + +  LL++A+ T  + S N  +++S   NH     +SQE +   I W N
Sbjct: 595 LWILQAILNPN-IERLLKRAMST-NIMSKNTKEIISIPNNHSYWIKLSQEFNQYLIFWNN 652

Query: 174 HGLAAVGQ 197
           +G+  V Q
Sbjct: 653 YGILYVIQ 660


>sp|O31542|YFND_BACSU Uncharacterized protein yfnD OS=Bacillus
           subtilis GN=yfnD PE=4 SV=1
          Length = 311

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 310 VPWEHT*IVQTHQPQDPVVL 251
           VPWEH   VQ H+ +DP +L
Sbjct: 50  VPWEHVTFVQLHEMEDPELL 69


>sp|Q9DC48|PRP17_MOUSE Pre-mRNA-processing factor 17 OS=Mus musculus
           GN=Cdc40 PE=2 SV=1
          Length = 579

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +1

Query: 184 RLWANVRQGTCLSKYTKGHLPYLIPQDPVADVFVLFKYVPKEQCLFSLEISSPGCIKKGV 363
           +LW +   G C+S++T   +PY +  +P  D   LF     ++ +   +I S   +++  
Sbjct: 357 KLW-DTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQE-- 413

Query: 364 TSKALYNHHCIAINSL 411
                Y+ H  A+N++
Sbjct: 414 -----YDRHLGAVNTI 424


>sp|O60508|PRP17_HUMAN Pre-mRNA-processing factor 17 OS=Homo sapiens
           GN=CDC40 PE=1 SV=1
          Length = 579

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +1

Query: 184 RLWANVRQGTCLSKYTKGHLPYLIPQDPVADVFVLFKYVPKEQCLFSLEISSPGCIKKGV 363
           +LW +   G C+S++T   +PY +  +P  D   LF     ++ +   +I S   +++  
Sbjct: 357 KLW-DTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQE-- 413

Query: 364 TSKALYNHHCIAINSL 411
                Y+ H  A+N++
Sbjct: 414 -----YDRHLGAVNTI 424

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911892|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_E02.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******