| BP911901 |
| Clone id |
YMU001_000010_F02 |
| Library |
YMU01 |
| Length |
545 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000010_F02. |
| Accession |
BP911901 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL728Contig1 |
| Sequence |
TGAGAACAGTCCTTCATACCCTTCCACAAGGGCGCGTCCTATAGCAAAGCTTGATATCCA
CAAAAGAGCATAAGAAAAACTTCAAAGTGTCAAGATCCCTGCCAATAGAAGCGCCAATCT
TCACGAACGTCGACAATCATCAAAGGGAAATCCTCTTGCCCGAGGACTCGATTGACAGAC
AGACAACACATATCCTCAAACACATGAAAAGTCCTGCACTTGCTTATCCTGATGTCGGAT
CCGACATACACATCATAGCACCATCTGCCTTCCAAGTCTTGAGATCGACAAATGACCTAT
ACAGTGGCGCCTTTGGCATACACATCCGGGCAGTAGAGTGTCCTGCAGACAGCCTGTCCC
AAATTCCACACCACAAACTTGATGGTACCTGCATCGAGCACTCCTCGTCCCGCTCACAAG
CTTGTGATATCAACCTTTGCTCCTACCGCCTGTGATAGCAGGAAACCCTTGCAATTTCCA
CTAGCAAATGCTCCATCTCGATGTACCTGTCCCCTAGCATCATCAAATATTTGCCCAATG
TACCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9MZS1 |
| Definition |
sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Oryctolagus cuniculus |
| Align length |
97 |
| Score (bit) |
35.4 |
| E-value |
0.18 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911901|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_F02.
(545 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activate... 35 0.18
sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activate... 33 0.68
sp|P68403|KPCB_RAT Protein kinase C beta type OS=Rattus norvegic... 33 1.2
sp|P05772|KPCB_RABIT Protein kinase C beta type OS=Oryctolagus c... 33 1.2
sp|P68404|KPCB_MOUSE Protein kinase C beta type OS=Mus musculus ... 33 1.2
sp|P05771|KPCB_HUMAN Protein kinase C beta type OS=Homo sapiens ... 33 1.2
sp|P05126|KPCB_BOVIN Protein kinase C beta type OS=Bos taurus GN... 33 1.2
sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated ... 33 1.2
sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activate... 33 1.2
sp|Q0UIN2|KYNU1_PHANO Kynureninase 1 OS=Phaeosphaeria nodorum GN... 32 2.0
sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus nor... 31 4.4
sp|P31368|PDM1_DROME Protein nubbin OS=Drosophila melanogaster G... 30 5.8
sp|Q2H0S0|IML1_CHAGB Vacuolar membrane-associated protein IML1 O... 26 5.8
sp|Q9SYC8|LPAT3_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransfe... 30 7.6
sp|Q8NHP7|EXDL1_HUMAN Exonuclease 3'-5' domain-like-containing p... 30 7.6
sp|Q91590|TEFF1_XENLA Tomoregulin-1 OS=Xenopus laevis GN=tmeff1 ... 30 9.9
sp|O12962|NXL5_BUNMU Kappa-5-bungarotoxin OS=Bungarus multicinct... 30 9.9
>sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activated
cyclic nucleotide-gated channel 1 OS=Oryctolagus
cuniculus GN=HCN1 PE=2 SV=2
Length = 822
Score = 35.4 bits (80), Expect = 0.18
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Frame = +1
Query: 283 DRQMTYTVAPLAY-----------TSGQ*SVLQTACPKFHT------TNLMVPASSTPRP 411
DR+M +AP++Y T+ S ++T P +T +NL P+ ST P
Sbjct: 565 DREMVQAIAPISYPQMTALNSTSSTATPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTP 624
Query: 412 AHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLAS 522
++S + T P+Q PLA P AS
Sbjct: 625 QPSAILSPCSYTTAVCSPPVQSPLATRTFHYASPTAS 661
>sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activated
cyclic nucleotide-gated channel 1 OS=Homo sapiens
GN=HCN1 PE=2 SV=2
Length = 890
Score = 33.5 bits (75), Expect = 0.68
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Frame = +1
Query: 283 DRQMTYTVAPLAY-----------TSGQ*SVLQTACPKFHT------TNLMVPASSTPRP 411
DR+M +AP+ Y T+ S ++T P +T +NL P+ ST P
Sbjct: 629 DREMVQAIAPINYPQMTTLNSTSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTP 688
Query: 412 AHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLAS 522
++S + T P+Q PLA P AS
Sbjct: 689 QPSAILSPCSYTTAVCSPPVQSPLAARTFHYASPTAS 725
>sp|P68403|KPCB_RAT Protein kinase C beta type OS=Rattus norvegicus
GN=Prkcb PE=1 SV=3
Length = 671
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTF-APTACDSRKPLQFPLANAPSRC-TCPLASSNICPM 540
PAS PR HK I T+ +PT CD L + L + +C TC + C M
Sbjct: 93 PASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 145
>sp|P05772|KPCB_RABIT Protein kinase C beta type OS=Oryctolagus
cuniculus GN=PRKCB PE=2 SV=3
Length = 671
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTF-APTACDSRKPLQFPLANAPSRC-TCPLASSNICPM 540
PAS PR HK I T+ +PT CD L + L + +C TC + C M
Sbjct: 93 PASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 145
>sp|P68404|KPCB_MOUSE Protein kinase C beta type OS=Mus musculus
GN=Prkcb PE=1 SV=3
Length = 673
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTF-APTACDSRKPLQFPLANAPSRC-TCPLASSNICPM 540
PAS PR HK I T+ +PT CD L + L + +C TC + C M
Sbjct: 93 PASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 145
>sp|P05771|KPCB_HUMAN Protein kinase C beta type OS=Homo sapiens
GN=PRKCB PE=1 SV=4
Length = 671
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTF-APTACDSRKPLQFPLANAPSRC-TCPLASSNICPM 540
PAS PR HK I T+ +PT CD L + L + +C TC + C M
Sbjct: 93 PASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 145
>sp|P05126|KPCB_BOVIN Protein kinase C beta type OS=Bos taurus
GN=PRKCB PE=2 SV=3
Length = 673
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTF-APTACDSRKPLQFPLANAPSRC-TCPLASSNICPM 540
PAS PR HK I T+ +PT CD L + L + +C TC + C M
Sbjct: 93 PASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 145
>sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated
cyclic nucleotide-gated channel 1 OS=Rattus norvegicus
GN=Hcn1 PE=2 SV=1
Length = 910
Score = 32.7 bits (73), Expect = 1.2
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Frame = +1
Query: 283 DRQMTYTVAPLAY-----------TSGQ*SVLQTACPKFHT------TNLMVPASSTPRP 411
DR+M + P+ Y T+ S ++T P +T +NL P+ ST P
Sbjct: 618 DREMVQAIPPINYPQMTALNCTSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTP 677
Query: 412 AHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLAS 522
++S + T P+Q PLA P AS
Sbjct: 678 QPSAILSPCSYTTAVCSPPIQSPLATRTFHYASPTAS 714
>sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activated
cyclic nucleotide-gated channel 1 OS=Mus musculus
GN=Hcn1 PE=1 SV=1
Length = 910
Score = 32.7 bits (73), Expect = 1.2
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Frame = +1
Query: 283 DRQMTYTVAPLAY-----------TSGQ*SVLQTACPKFHT------TNLMVPASSTPRP 411
DR+M + P+ Y T+ S ++T P +T +NL P+ ST P
Sbjct: 618 DREMVQAIPPINYPQMTALNCTSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTP 677
Query: 412 AHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLAS 522
++S + T P+Q PLA P AS
Sbjct: 678 QPSAILSPCSYTTAVCSPPIQSPLATRTFHYASPTAS 714
>sp|Q0UIN2|KYNU1_PHANO Kynureninase 1 OS=Phaeosphaeria nodorum
GN=BNA5-1 PE=3 SV=1
Length = 506
Score = 32.0 bits (71), Expect = 2.0
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +3
Query: 120 FTNVDNHQREILLPEDSIDRQTTHILKHMKSPALAYPDVGSDIHIIAPSAFQVLRSTNDL 299
FT+ + L +D++ QT+ I+ + S + + +++H++ S + R T D
Sbjct: 103 FTDYEGGLPPWLHIDDAVKEQTSKIVGALPSEVVIMETLTANLHLLMSSFY---RPTKDR 159
Query: 300 YSGAFGIHIRAVECPAD---SLSQIPHHKLDGTCI 395
+ I I P+D +LSQI HH LD + +
Sbjct: 160 WK----IIIEGKAFPSDHYAALSQIAHHDLDPSAL 190
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q6A6B7 |
| Definition |
tr|Q6A6B7|Q6A6B7_PROAC Putative uncharacterized protein OS=Propionibacterium acnes |
| Align length |
57 |
| Score (bit) |
37.0 |
| E-value |
0.68 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911901|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_F02.
(545 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q6A6B7|Q6A6B7_PROAC Putative uncharacterized protein OS=Propi... 37 0.68
tr|B5DL38|B5DL38_DROPS GA22995 OS=Drosophila pseudoobscura pseud... 35 2.0
tr|B0DER6|B0DER6_LACBS Predicted protein OS=Laccaria bicolor (st... 35 2.0
tr|Q9FLK4|Q9FLK4_ARATH Dimethylaniline monooxygenase (N-oxide-fo... 35 3.4
tr|A9VEJ6|A9VEJ6_MONBE Predicted protein (Fragment) OS=Monosiga ... 34 4.4
tr|Q2HI39|Q2HI39_CHAGB Predicted protein OS=Chaetomium globosum ... 34 4.4
tr|Q1HVH9|Q1HVH9_EBVG BPLF1 OS=Epstein-Barr virus (strain GD1) P... 34 5.8
tr|Q6QP45|Q6QP45_MAIZE Putative growth-regulating factor 1 OS=Ze... 33 7.6
tr|Q86WJ6|Q86WJ6_HUMAN Hyperpolarization activated cyclic nucleo... 33 7.6
tr|A9AZI8|A9AZI8_HERA2 Glycoside hydrolase family 18 OS=Herpetos... 33 9.9
tr|A2QVY5|A2QVY5_ASPNC Contig An11c0120, complete genome OS=Aspe... 33 9.9
>tr|Q6A6B7|Q6A6B7_PROAC Putative uncharacterized protein
OS=Propionibacterium acnes GN=PPA1980 PE=4 SV=1
Length = 145
Score = 37.0 bits (84), Expect = 0.68
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 198 KHMKSPALAYPDVGSDIHIIAPSAFQVLRSTNDLYSGAFGIHIRAVECPADSLSQIP 368
+HMKS +L PD G +A + V A G+ ++ V+CP +SL Q+P
Sbjct: 99 RHMKSGSLLPPDAGKSASSVACRIYDV----------AHGVTVQQVDCPKESLDQLP 145
>tr|B5DL38|B5DL38_DROPS GA22995 OS=Drosophila pseudoobscura
pseudoobscura GN=GA22995 PE=4 SV=1
Length = 1194
Score = 35.4 bits (80), Expect = 2.0
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Frame = +1
Query: 64 KSIRKTSKCQDPCQ*KRQSSRTSTIIKGKSSCPRTRLTDRQHISSNT*KVLHLLILMSDP 243
KS TS Q P ++S +T SS P T+ T Q S+ T + +
Sbjct: 1003 KSTTITSTTQKPTTTSSKTSTITTTTAQPSSAPSTKTTSPQPSSTTTLQTTTKMTTQPST 1062
Query: 244 TYTS*H---HLPSKS*DRQMTYTVAPLAYTSGQ*SVLQTACPKFHTTNLMVPASSTPRPA 414
T+ +PS S T T P +S + +V + ACP +T + P
Sbjct: 1063 KTTAKRTTVEIPSTSTAAISTPTTTP---SSEETTVTKPACPDHGSTEVSNPGDYATEKV 1119
Query: 415 HKLVISTFAP 444
+L++ F P
Sbjct: 1120 PELILKVFEP 1129
>tr|B0DER6|B0DER6_LACBS Predicted protein OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_328400 PE=4 SV=1
Length = 752
Score = 35.4 bits (80), Expect = 2.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 295 TYTVAPLAYTSGQ*SVLQTACPKFHTTNLMVPASSTPRPAHKLVISTFAPTACDSRKPLQ 474
T T AP +Y S S T K H+ ++ PAS PRP H L+ T ++ + PL
Sbjct: 5 TSTTAPSSYYSALSSSSTTTKSKRHSLAILPPASPGPRPLH-LLDGTITSSSTSASSPLH 63
Query: 475 FP 480
P
Sbjct: 64 SP 65
>tr|Q9FLK4|Q9FLK4_ARATH Dimethylaniline monooxygenase
(N-oxide-forming)-like protein (Putative uncharacterized
protein At5g61290) (Putative uncharacterized protein
At5g61290/mfb13_60) OS=Arabidopsis thaliana
GN=At5g61290/mfb13_60 PE=2 SV=1
Length = 461
Score = 34.7 bits (78), Expect = 3.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = -1
Query: 314 KGATV*VICRSQDLEGRWCYDVYVGSDIRISKCRTFHV----FEDMCCLSVNRVLGQEDF 147
+G V V+ ++ D+ G+W Y V + + K +T V + + S V+G DF
Sbjct: 35 EGHKVVVMEQNHDVGGQWLYQPNVDEEDTLGKTKTLKVHSSVYSSLRLASPREVMGFSDF 94
Query: 146 PLMIVDVREDWRFYWQGS*HFEVFLMLFC 60
P + + R+ RF G ++L FC
Sbjct: 95 PFIAKEGRDSRRF--PGHEELLLYLKDFC 121
>tr|A9VEJ6|A9VEJ6_MONBE Predicted protein (Fragment) OS=Monosiga
brevicollis GN=30645 PE=4 SV=1
Length = 438
Score = 34.3 bits (77), Expect = 4.4
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 213 PALAYPDVGSDIHIIAPSAFQVLRSTNDLYSGAFGIHIRAVECPADSLSQIPHHKLDGTC 392
P L + GSD H + P FQ R +G + H+R PA L H+LD +
Sbjct: 373 PKLPSIETGSDRHAMDPEEFQFRRLVRHSLNGQWQAHLRDRIFPAALLHYNRQHRLDLSM 432
Query: 393 IEH 401
+E+
Sbjct: 433 VEY 435
>tr|Q2HI39|Q2HI39_CHAGB Predicted protein OS=Chaetomium globosum
GN=CHGG_00115 PE=4 SV=1
Length = 559
Score = 34.3 bits (77), Expect = 4.4
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -3
Query: 393 CRYHQVCGVEFGTGCLQDTLLPGCVCQRRHCIGHLSISRLGRQMVL*CVCRIRHQDKQVQ 214
CR +Q GVE + PGC C+RRH + + L VCR+ ++D Q+
Sbjct: 246 CRLNQCLGVEPSA---RPAPSPGCFCRRRHAAFSSTCNCWDPPTSLFLVCRVLYRDAQLV 302
Query: 213 DFS 205
FS
Sbjct: 303 FFS 305
>tr|Q1HVH9|Q1HVH9_EBVG BPLF1 OS=Epstein-Barr virus (strain GD1) PE=4
SV=1
Length = 3154
Score = 33.9 bits (76), Expect = 5.8
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 388 PASSTPRPAHKLVISTFAPTACDS-RKPLQFPL---ANAPSRCTCPLASSNICP 537
PAS TPRPA +ST AP+ S R PLQ P+ APS PL + + P
Sbjct: 480 PASPTPRPA---PVSTIAPSVTPSPRLPLQIPIPLPQAAPSNPEIPLTTPSPSP 530
>tr|Q6QP45|Q6QP45_MAIZE Putative growth-regulating factor 1 OS=Zea
mays GN=Z576C20.6 PE=4 SV=1
Length = 395
Score = 33.5 bits (75), Expect = 7.6
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +1
Query: 391 ASSTPRPAHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLASS 525
AS P P H LV+ T D+ L FP +PSR TC L SS
Sbjct: 32 ASGAPVP-HDLVLPLRLATGVDTAPSLAFPPQPSPSRTTCALLSS 75
>tr|Q86WJ6|Q86WJ6_HUMAN Hyperpolarization activated cyclic
nucleotide-gated potassium channel OS=Homo sapiens
GN=HCN1 PE=2 SV=1
Length = 890
Score = 33.5 bits (75), Expect = 7.6
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Frame = +1
Query: 283 DRQMTYTVAPLAY-----------TSGQ*SVLQTACPKFHT------TNLMVPASSTPRP 411
DR+M +AP+ Y T+ S ++T P +T +NL P+ ST P
Sbjct: 629 DREMVQAIAPINYPQMTTLNSASSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTP 688
Query: 412 AHKLVISTFAPTACDSRKPLQFPLANAPSRCTCPLAS 522
++S + T P+Q PLA P AS
Sbjct: 689 QPSAILSPCSYTTAVCSPPVQSPLAARTFHYASPTAS 725
>tr|A9AZI8|A9AZI8_HERA2 Glycoside hydrolase family 18
OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=Haur_2494 PE=3 SV=1
Length = 904
Score = 33.1 bits (74), Expect = 9.9
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 373 TNLMVPASSTPRPAHKLVISTFAPT----ACDSRKPLQFPLANAPSRCTCPLASSN 528
TN VP ++TPRP + V T PT A + P P CT P SN
Sbjct: 720 TNTAVPPTNTPRPTNTPVGPTSTPTRTPIATATNTPAPSATPTQPGTCTAPAWESN 775
|