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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911908
Clone id YMU001_000010_F12
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCGCGGCCCATACTCAAAATTGAATTCAGTATCTGCATGCACATGCCAAGAAGTTGGAA
GCTGTCCTGAAGCCCAAATCAAACAAAAGAAATGTTAATGATTGCACTTTTAAGTACGGA
ATCATAAAGTGTGTGCTACTGCTTTATTTTTTTGAAAAACATGGTCTTTTTCAAACTGAA
TCCTCTAGATACTGCTACACATTAAGAATCATCTACAACCAGGCAAGGTACCCCGGAATC
ACTTCTAGAATGCCACTTTATGTAACACTTAACCAATCACATTCCCACTCACTTAGCGAA
AGACCAAATAAATTCAAGCAATGCAAGACAAAAGCAAGATTAATAGACCAAGTGACTTAC
AGAGGGGATTTTGTCGCATGTTAATACTGCCAATCTGTATGATGTTACCATATGCCGTGA
GAATGGCCATATCTCTCGTAAAGTCCACTCGAAATGATATTTACCACTCAA
■■Homology search results ■■ -
sp_hit_id Q6WBX7
Definition sp|Q6WBX7|RAD9B_MOUSE Cell cycle checkpoint control protein RAD9B homolog OS=Mus musculus
Align length 63
Score (bit) 30.4
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911908|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_F12.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6WBX7|RAD9B_MOUSE Cell cycle checkpoint control protein RAD9...    30   4.2  
sp|Q66FF0|RHAT_YERPS L-rhamnose-proton symporter OS=Yersinia pse...    30   6.9  
sp|A4TRS5|RHAT_YERPP L-rhamnose-proton symporter OS=Yersinia pes...    30   6.9  
sp|Q1CEB8|RHAT_YERPN L-rhamnose-proton symporter OS=Yersinia pes...    30   6.9  
sp|Q8ZIZ8|RHAT_YERPE L-rhamnose-proton symporter OS=Yersinia pes...    30   6.9  
sp|Q1C0W4|RHAT_YERPA L-rhamnose-proton symporter OS=Yersinia pes...    30   6.9  
sp|A7FN78|RHAT_YERP3 L-rhamnose-proton symporter OS=Yersinia pse...    30   6.9  
sp|Q499V3|RAD9B_RAT Cell cycle checkpoint control protein RAD9B ...    30   7.1  
sp|Q55DZ8|SYWC_DICDI Tryptophanyl-tRNA synthetase, cytoplasmic O...    29   9.3  

>sp|Q6WBX7|RAD9B_MOUSE Cell cycle checkpoint control protein RAD9B
           homolog OS=Mus musculus GN=Rad9b PE=2 SV=1
          Length = 403

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 85  KRNVNDCTFKYGIIKCVLLLYFFEKHGLFQTESSRY--CYTLRIIYNQARYPGITSRMPL 258
           +R+V  CT      KC +++ FF KHG+ +T +  +     L+II+ ++    I    P 
Sbjct: 99  ERSVEKCTVVARADKCRVVIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPR 158

Query: 259 YVT 267
            +T
Sbjct: 159 LLT 161


>sp|Q66FF0|RHAT_YERPS L-rhamnose-proton symporter OS=Yersinia
           pseudotuberculosis GN=rhaT PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 290 MSWMLHMSFYVLCGGIVGLLLKEWKC 315


>sp|A4TRS5|RHAT_YERPP L-rhamnose-proton symporter OS=Yersinia pestis
           (strain Pestoides F) GN=rhaT PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 290 MSWMLHMSFYVLCGGIVGLLLKEWKC 315


>sp|Q1CEB8|RHAT_YERPN L-rhamnose-proton symporter OS=Yersinia pestis
           bv. Antiqua (strain Nepal516) GN=rhaT PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 290 MSWMLHMSFYVLCGGIVGLLLKEWKC 315


>sp|Q8ZIZ8|RHAT_YERPE L-rhamnose-proton symporter OS=Yersinia pestis
           GN=rhaT PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 290 MSWMLHMSFYVLCGGIVGLLLKEWKC 315


>sp|Q1C0W4|RHAT_YERPA L-rhamnose-proton symporter OS=Yersinia pestis
           bv. Antiqua (strain Antiqua) GN=rhaT PE=3 SV=1
          Length = 343

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 289 MSWMLHMSFYVLCGGIVGLLLKEWKC 314


>sp|A7FN78|RHAT_YERP3 L-rhamnose-proton symporter OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=rhaT PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 356 VTWSINLAFVLHCLNLFGLSLSEWEC 279
           ++W ++++F + C  + GL L EW+C
Sbjct: 290 MSWMLHMSFYVLCGGIVGLLLKEWKC 315


>sp|Q499V3|RAD9B_RAT Cell cycle checkpoint control protein RAD9B
           homolog OS=Rattus norvegicus GN=Rad9b PE=2 SV=1
          Length = 398

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 85  KRNVNDCTFKYGIIKCVLLLYFFEKHGLFQTESSRY--CYTLRIIYNQA 225
           +R++  CT      +C +++ FF +HG+ +T +  +  C  L+I++ ++
Sbjct: 94  ERSIEKCTMVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKS 142


>sp|Q55DZ8|SYWC_DICDI Tryptophanyl-tRNA synthetase, cytoplasmic
           OS=Dictyostelium discoideum GN=trpS PE=3 SV=1
          Length = 400

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = -1

Query: 192 VSRGFSLKKTMFFKKIKQ*HTLYDSVLKSA-IINISFV--*FGLQDS 61
           ++ GF ++KT  F  ++  H LY +VLK A  +N++ +   FG ++S
Sbjct: 154 IALGFDIQKTFIFSNLEYIHHLYPNVLKIARCVNLNQIQNIFGFKES 200
tr_hit_id B7G9E6
Definition tr|B7G9E6|B7G9E6_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 50
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911908|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_F12.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7G9E6|B7G9E6_PHATR Predicted protein OS=Phaeodactylum tricor...    35   1.4  
tr|Q7ZU74|Q7ZU74_DANRE Zgc:56306 OS=Danio rerio GN=zgc:56306 PE=...    33   5.4  

>tr|B7G9E6|B7G9E6_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_39708 PE=4 SV=1
          Length = 1883

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 121 IIKCVLLLYFFEKHGLFQTESSRYCYTLRIIYNQARYPGITSRMPLYVTL 270
           I+K    +Y F   GLF + S  +C+T+  ++N+A+   I   M L+ T+
Sbjct: 503 ILKFSAPIYIFAWIGLFSSSSLGFCFTVSALFNKAKLASILGPMILFATI 552


>tr|Q7ZU74|Q7ZU74_DANRE Zgc:56306 OS=Danio rerio GN=zgc:56306 PE=2
           SV=1
          Length = 1032

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 217 NQARYPGITSRMPLYVTLNQSHSHSLSERPNKFKQCKTKARLIDQVTYR 363
           N++  P   S  P     ++ HS+ + +RP+ F Q KT   ++D  TYR
Sbjct: 442 NRSDTPSSLSSTPPLRETSELHSYMVMDRPSNFSQNKTSRDMLDVETYR 490