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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911917
Clone id YMU001_000010_C08
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGACCAAACTCACAAAAGTGAGTGGAAGAATAAAATTAAAAGCAGCATAGACCATACAA
ACTCCGTGCAGGACTTGCAAAACGAACTACCAGATATGCCAGGCTAAGCAGGGAAGACAC
CCCACCATTCACAACATCACCACAAAGATAACCTAGGTAGATCGGGTAATCTGGGGGCCA
CCCATTGATAATCGAGAACATGCATCCGAAGAAAAGGGGGAGCTTGGGAGCTCCATCACC
TGCAAGATATGAGCGACCATGGATGAATTTGAGCTGGCACCACGAATCGATCCTCCGAAG
GAAGGATCCTGTAGACCACACCACCATAGTCGGGGGTCCGCCACACCAACGGACTATGTC
CACATAAGCTATCACATGGTGCTCTCACACGGTGAGCATGCCCAAACACCAAACTTCGCG
TCTCGACCACCATGTAGGCCTTCCAGCTTGGAGCCCTTCTGCAGAATATAGCATGCCGTC
CTGCCTCACAGTCGGAAGCAAAGCCCATGGCGAAGGAG
■■Homology search results ■■ -
sp_hit_id Q56A06
Definition sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
Align length 37
Score (bit) 31.6
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911917|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C08.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing pr...    32   2.3  
sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis...    32   2.3  
sp|O67542|Y1612_AQUAE Uncharacterized protein aq_1612 OS=Aquifex...    31   3.0  
sp|Q9Z0K9|AMEL_CAVPO Amelogenin OS=Cavia porcellus GN=AMEL PE=2 ...    31   4.0  
sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 ...    30   5.2  
sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio GN=r...    30   6.8  
sp|Q7NIH2|CRCB_GLOVI Protein crcB homolog OS=Gloeobacter violace...    30   6.8  
sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=...    30   8.8  
sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio GN...    27   9.0  

>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing
           protein 2 OS=Mus musculus GN=Tmtc2 PE=2 SV=1
          Length = 836

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 332 RLWWCGLQDPSFGGSIRGASSNSSMVAHILQVMELPS 222
           RL+W G + PSF  S   A+ + S++A  L  + LP+
Sbjct: 242 RLYWMGNKPPSFSNSDNPAADSDSLLARTLTFLYLPT 278


>sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis
           thaliana GN=BHLH30 PE=1 SV=1
          Length = 368

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 15  KSEWKNKIKSSIDHTNSVQDLQNELPDMPG*AGKTPHHSQHHH----KDNLGRSGNLGA 179
           K E + + + S +  N++Q+ QN+L           HH  HHH     + LG SGN+G+
Sbjct: 5   KEEEEEEEEDSSEAMNNIQNYQNDLFFHQ----LISHHHHHHHDPSQSETLGASGNVGS 59


>sp|O67542|Y1612_AQUAE Uncharacterized protein aq_1612 OS=Aquifex
           aeolicus GN=aq_1612 PE=3 SV=1
          Length = 486

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 278 HHESILRRKDPVDHTTIVGGPPHQRTMST*AITWCSHTVSMP 403
           H  +I+ RKDP+  TTIVG PP +       + W +  + +P
Sbjct: 301 HVTAIVMRKDPIYLTTIVGRPPQEDKY----LGWATERIFLP 338


>sp|Q9Z0K9|AMEL_CAVPO Amelogenin OS=Cavia porcellus GN=AMEL PE=2
           SV=1
          Length = 226

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 292 PPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSSLEPF 459
           PP   +  PHHH          V     M +  G H+ TPN   +P   P+S +PF
Sbjct: 89  PPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP-GHHSMTPNQHHQPNLPPTSQQPF 143


>sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15
           OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1
          Length = 436

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +1

Query: 178 PPIDNREHASEEKGELGSSITCKI*ATMDEFELAPRIDP-PKEGSCRPHHHSRGSATPTD 354
           P +D R H  ++K     +    +    D     P + P P  G   P HH  G A   D
Sbjct: 192 PEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKD 251

Query: 355 YVHISYH 375
           ++H   H
Sbjct: 252 FIHTLLH 258


>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio
           GN=ranbp10 PE=3 SV=1
          Length = 604

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256 TMDEFELAPRIDPPKEGSCRPHHHSRGSATPTDYVHIS-YHMVLSHGEHAQTPNFASRPP 432
           + D +  +P + P + G+  PH HS G+ +PT    ++  +   SH ++    + +S P 
Sbjct: 346 SQDSYPGSPNMSP-RHGATNPHLHSTGADSPTCSNGVTPPNKNKSHNKYTGISSASSSPS 404

Query: 433 CRPSSL 450
             PSS+
Sbjct: 405 SSPSSV 410


>sp|Q7NIH2|CRCB_GLOVI Protein crcB homolog OS=Gloeobacter violaceus
           GN=crcB PE=3 SV=1
          Length = 125

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
 Frame = -3

Query: 357 IVRWCGGPP----TMVVWSTGSF-LRRIDSWC-QLKFIHGRSYLAGDG-----APKLPLF 211
           I +W G PP    T++V   GSF L  + +W   L+       LAG G          L 
Sbjct: 26  ISQWAGAPPFLFGTLLVNLVGSFMLGGLFAWSVALRIDPALLLLAGTGFCGGFTTFSALS 85

Query: 210 FGCMFSIINGWPPDYPIYLGYLCGDVVNG 124
             C+  +  G   DYP  +GYL G ++ G
Sbjct: 86  IECLVLLQKG---DYPTAMGYLLGSLLGG 111


>sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=Mus
           musculus GN=Hs6st3 PE=1 SV=1
          Length = 470

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 ATMDEFELAPRIDPPKEGSCRPHHHSRGSATPTD 354
           A +DE+E  P++ PP  G   P   SRG A P D
Sbjct: 60  APLDEWERRPQLPPPPRG---PPEGSRGVAAPED 90


>sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio
           GN=mafb PE=2 SV=1
          Length = 356

 Score = 27.3 bits (59), Expect(2) = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 81  NELPDMPG*AGKTPHHSQHHH 143
           ++L   PG  G  PHH  HHH
Sbjct: 175 DDLSGHPGAHGHHPHHHHHHH 195



 Score = 20.8 bits (42), Expect(2) = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 123 HHSQHHHKDNLGRSGNLG 176
           HH  HH   + G+ G+ G
Sbjct: 215 HHHHHHPHGHPGQQGHHG 232
tr_hit_id A7PD40
Definition tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 42
Score (bit) 37.0
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911917|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_C08.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genom...    37   0.59 
tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensi...    36   1.3  
tr|A3HV71|A3HV71_9SPHI Putative endonuclease OS=Algoriphagus sp....    35   1.7  
tr|B2W378|B2W378_PYRTR Putative uncharacterized protein OS=Pyren...    35   1.7  
tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensi...    34   5.0  
tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida ...    34   5.0  
tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida ...    34   5.0  
tr|A7JI30|A7JI30_FRANO Putative uncharacterized protein OS=Franc...    34   5.0  
tr|Q5NH26|Q5NH26_FRATT Endonuclease III OS=Francisella tularensi...    33   6.5  
tr|Q5L3K0|Q5L3K0_GEOKA Putative uncharacterized protein GK0195 O...    33   6.5  
tr|Q2A3R8|Q2A3R8_FRATH Endonuclease III OS=Francisella tularensi...    33   6.5  
tr|Q14IH8|Q14IH8_FRAT1 Endonuclease III OS=Francisella tularensi...    33   6.5  
tr|Q0BM72|Q0BM72_FRATO DNA-(Apurinic or apyrimidinic site) lyase...    33   6.5  
tr|A7NBU4|A7NBU4_FRATF Endonuclease III OS=Francisella tularensi...    33   6.5  
tr|A4IY94|A4IY94_FRATW Endonuclease III OS=Francisella tularensi...    33   6.5  
tr|A7YTF9|A7YTF9_FRATU Putative uncharacterized protein OS=Franc...    33   6.5  
tr|A7JBS6|A7JBS6_FRATT Putative uncharacterized protein OS=Franc...    33   6.5  
tr|A6TTQ4|A6TTQ4_ALKMQ Oxidoreductase domain protein OS=Alkaliph...    33   8.5  
tr|A8HUY1|A8HUY1_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   8.5  
tr|Q0IFF7|Q0IFF7_AEDAE Putative uncharacterized protein OS=Aedes...    33   8.5  

>tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00016129001
            PE=4 SV=1
          Length = 1127

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 304  GSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRP 429
            GSC+PH H + ++    + H++YH   S    +QTPNF S P
Sbjct: 1063 GSCKPHQHQKMASA---WYHVTYHSTFS----SQTPNFLSFP 1097


>tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensis
           subsp. mediasiatica (strain FSC147) GN=nth PE=4 SV=1
          Length = 212

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG H  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRHICT---AQRPRCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|A3HV71|A3HV71_9SPHI Putative endonuclease OS=Algoriphagus sp.
           PR1 GN=ALPR1_02340 PE=4 SV=1
          Length = 221

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 346 PTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSSLEPFCR 465
           P +YVH+++H ++ HG +      A +P C   SL  FC+
Sbjct: 171 PKEYVHVAHHWLILHGRYV---CLARKPKCEECSLTHFCK 207


>tr|B2W378|B2W378_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_03876 PE=4 SV=1
          Length = 824

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -3

Query: 282 WCQLKFIHGRSYLAGDGAPKLPLFFGCMFSIINGWPPDYPIYLGYLCGD 136
           WC + F+  R+ + GDG  ++ L++  M++ I+   P   I+LG L  D
Sbjct: 71  WC-MHFVGNRAIVLGDGEKEIQLYYSPMYTAISAVLPVLVIFLGLLAAD 118


>tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensis
           subsp. novicida (strain U112) GN=nth PE=4 SV=1
          Length = 212

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida FTE
           GN=nth PE=4 SV=1
          Length = 212

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida
           GA99-3548 GN=FTDG_00610 PE=4 SV=1
          Length = 212

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|A7JI30|A7JI30_FRANO Putative uncharacterized protein
           OS=Francisella novicida GA99-3549 GN=FTCG_00563 PE=4
           SV=1
          Length = 212

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|Q5NH26|Q5NH26_FRATT Endonuclease III OS=Francisella tularensis
           subsp. tularensis GN=nth PE=4 SV=1
          Length = 212

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 268 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPSS 447
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPRCRNCI 198

Query: 448 LEPFC 462
           +  +C
Sbjct: 199 IYDYC 203


>tr|Q5L3K0|Q5L3K0_GEOKA Putative uncharacterized protein GK0195
           OS=Geobacillus kaustophilus GN=GK0195 PE=4 SV=1
          Length = 100

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 373 DSLCG-HSPLVWRTPDYGGVVYRILP----SEDRFVVPAQIHPWS 254
           D +CG HSP V RTPDY    YR +P    ++ R V P +  P++
Sbjct: 2   DKVCGRHSPAVKRTPDYISQAYRCIPRCNLTDIRPVRPQKARPFA 46