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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911924
Clone id YMU001_000010_G10
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAAAGCAGATGAGAGTTTGCCAAAGTCTTGAGAAGGCCAAGCGCGAGTTAAAGAAAAAA
CTTGGTTATGATCCATCGTACGAGCTTTGGGCACAGTCTGTCAGTATGTCTACGGCAGAG
CTCCTTTCTATGGTCAGAGAGGGTGAGATTGCAAGACACAAAATGGTTCGTTGTCACTTA
CGGCTTGTGGTTTCTGTGGCAAGGGCTTATGAAAACCTTGGAATGGACGTGGCAGATCTC
ATTCTGGAAGGTTCGAAAGGTCTCCTTCGTGGCTTGGAGAAGTTTGATCATCGGAAAGGT
CTTAAAGTTTCCACATATGTTCATTGGTGGATTAGGCAGGGCATCACCAGAGCAATAGCT
GAGCATTCAAGGCTGTTGCGAGTGCCTGTCTATTTGCATGAGATTATGGTTTCAGTCAAA
GTAGCAACGAATTCATTGAGGGTCCAAGGAAAGCCTGTGACAGTGGAGAATCTATCCTCA
ATGCTGAATGTTTCAACTGAAAGGATAACAAGAGCGTTGCGGACGAGTCAGGCTAAGACC
AGAATCGTATCTTTCGACAAAAGTGATGATTCATA
■■Homology search results ■■ -
sp_hit_id Q31ME3
Definition sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942)
Align length 157
Score (bit) 130.0
E-value 4.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911924|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_G10.
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec...   130   4e-30
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...   128   2e-29
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...   127   3e-29
sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena s...   122   1e-27
sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synec...   122   1e-27
sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena s...   121   2e-27
sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=S...   120   4e-27
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...   120   4e-27
sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...   119   1e-26
sp|Q59914|HRDD_STRGR RNA polymerase principal sigma factor hrdD ...   116   7e-26
sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD OS=Enteroc...   115   2e-25
sp|Q59753|RPOD_RHIME RNA polymerase sigma factor rpoD OS=Rhizobi...   114   3e-25
sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacill...   114   3e-25
sp|Q04506|RPOD_LACLA RNA polymerase sigma factor rpoD OS=Lactoco...   114   5e-25
sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor rpoD OS=Agrobac...   114   5e-25
sp|P18249|HRDD_STRCO RNA polymerase principal sigma factor hrdD ...   112   1e-24
sp|P27785|RPOD_STRAU RNA polymerase sigma factor rpoD OS=Strepto...   112   1e-24
sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD OS=Strepto...   110   4e-24
sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD OS=Strepto...   110   4e-24
sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobac...   110   4e-24
sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobac...   110   4e-24
sp|P58290|RPOD_LACLC RNA polymerase sigma factor rpoD (Fragment)...   110   4e-24
sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor hrdA ...   110   4e-24
sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD OS=Strepto...   110   5e-24
sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4 OS=Synec...   110   5e-24
sp|Q60012|HRDD_STRVF RNA polymerase principal sigma factor hrdD ...   110   5e-24
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb...   110   7e-24
sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamyd...   110   7e-24
sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor rpoD OS=Staphyl...   109   9e-24
sp|P52324|RPOD_CAUCR RNA polymerase sigma factor rpoD OS=Cauloba...   109   9e-24

>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2
           PE=1 SV=1
          Length = 320

 Score =  130 bits (328), Expect = 4e-30
 Identities = 64/157 (40%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G++PS E WA +V ++  +L   + +G+ A+ KM+  +LRLVVS+A+ Y+   M+  DLI
Sbjct: 56  GHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLI 115

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
            EG+ GL RG+EKFD  KG K STY +WWIRQ ITRAIA+ SR +R+P+++ E +  +K 
Sbjct: 116 QEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKK 175

Query: 424 ATNSLRVQ-GKPVTVENLSSMLNVSTERITRALRTSQ 531
               L  Q G+  T   L+ +L +  E++   ++ ++
Sbjct: 176 TQRELSQQLGRSATASELAEVLELPLEQVREYIQMNR 212


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score =  128 bits (322), Expect = 2e-29
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
 Frame = +1

Query: 70  DPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILE 249
           DP    WA++V +        +  G  A+ KMV+ +LRLVVS+A+ Y N G+   DLI E
Sbjct: 127 DPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 186

Query: 250 GSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVAT 429
           GS GL+R  EKFDH KG K STY  WWIRQ ITRAIA+ SR +R+PV+L+E +  +K  T
Sbjct: 187 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 246

Query: 430 NSL-RVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRI-VSFDKSDDS 573
             L +  G+  T E +++ + ++ E++    +++Q    +     K +DS
Sbjct: 247 KLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 296


>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score =  127 bits (320), Expect = 3e-29
 Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
 Frame = +1

Query: 73  PSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEG 252
           PS   WA +V     E    +  G  A+ KMV+ +LRLVVS+A+ Y N G+   DLI EG
Sbjct: 137 PSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 196

Query: 253 SKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVATN 432
           S GL+R  EKFDH KG K STY  WWIRQ ITRAIA+ SR +R+PV+L+E +  +K  T 
Sbjct: 197 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 256

Query: 433 SL-RVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRI-VSFDKSDDS 573
            L +  G+  T E +++ + ++ E++    +++Q    +     K +DS
Sbjct: 257 LLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 305


>sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena sp.
           (strain PCC 7120) GN=sigC PE=3 SV=2
          Length = 416

 Score =  122 bits (307), Expect = 1e-27
 Identities = 61/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
 Frame = +1

Query: 88  WAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEGSKGLL 267
           WA+   M+  EL  M  +G  ++  M++ +LRLVVSVA+ Y+N G+++ DL+ EG+ GL 
Sbjct: 156 WAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 215

Query: 268 RGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVATNSL-RV 444
           R +EKFD  KG + STY +WWIRQGITRAIA  SR +R+PV++ E +  +K A   + + 
Sbjct: 216 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQE 275

Query: 445 QGKPVTVENLSSMLNVSTERITRAL 519
           +G+  T+E+L+  L+++  ++   L
Sbjct: 276 KGRTPTLEDLAIELDMTPTQVREVL 300


>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3
           PE=3 SV=1
          Length = 320

 Score =  122 bits (307), Expect = 1e-27
 Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
 Frame = +1

Query: 70  DPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILE 249
           DPS   WA +  +S  EL      GE A+ KM+  +LRLVVSVA+ Y    MD+ DLI E
Sbjct: 58  DPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQE 117

Query: 250 GSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVAT 429
           G+ G+ RG+EKFD  KG + STY +WWIRQ ITRAIAE +R +R+P+++ E +  +K   
Sbjct: 118 GTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQ 177

Query: 430 NSLRVQ-GKPVTVENLSSMLNVSTERI 507
             L  Q G+  T+  L++ L+++  ++
Sbjct: 178 RQLSQQLGRTATLPELAAALDLTPAQV 204


>sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena sp.
           (strain PCC 7120) GN=sigB PE=3 SV=1
          Length = 332

 Score =  121 bits (304), Expect = 2e-27
 Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
 Frame = +1

Query: 70  DPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILE 249
           +P+ + WA  + +    LL  + +G+IA+ KM++ +LRLVVS+A+ Y+   ++  DLI E
Sbjct: 70  EPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQE 129

Query: 250 GSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVAT 429
           G+ GL RG+EKFD   G K STY +WWIRQGITRAIA+ SR +R+P+++ + +  +K   
Sbjct: 130 GALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQ 189

Query: 430 NSLRVQ-GKPVTVENLSSMLNVSTERITRALR 522
             L  + G    V  ++  LN+   +I   L+
Sbjct: 190 RELSQKLGYIAGVTEIAQALNLEPSQIREYLQ 221


>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor
           OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1
          Length = 404

 Score =  120 bits (302), Expect = 4e-27
 Identities = 59/145 (40%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
 Frame = +1

Query: 88  WAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEGSKGLL 267
           WA+   ++  EL ++ ++G  A+  M++ +LRLVVSVA+ Y+N G+++ DLI EG+ GL 
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 203

Query: 268 RGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVATNSL-RV 444
           R +EKFD  KG + STY +WWIRQGITRAIA  SR++R+PV++ E +  +K A   + + 
Sbjct: 204 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQE 263

Query: 445 QGKPVTVENLSSMLNVSTERITRAL 519
           +G    ++ ++  L ++ E++   L
Sbjct: 264 KGHTPKIDEVAEELGMTPEQVREVL 288


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score =  120 bits (302), Expect = 4e-27
 Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 3/170 (1%)
 Frame = +1

Query: 73  PSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEG 252
           P  E W        +     +  G  A+ KMV+ +LRLVVS+A+ Y N G+   DLI EG
Sbjct: 154 PLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 213

Query: 253 SKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVATN 432
           S GL+R  EKFDH KG K STY  WWIRQ ITRAIA+ SR +R+PV+L+E +  +K  T 
Sbjct: 214 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 273

Query: 433 --SLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRI-VSFDKSDDS 573
             S  ++ KP T E +++ + ++ E++    +++Q    +     K +DS
Sbjct: 274 ILSQEMRRKP-TEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 322


>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score =  119 bits (298), Expect = 1e-26
 Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
 Frame = +1

Query: 88  WAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEGSKGLL 267
           W+Q  + + A     +     A+ KMV+ +LRLVVS+A+ Y N G+   DLI EGS GL+
Sbjct: 168 WSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLI 227

Query: 268 RGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKVATN--SLR 441
           R  EKFDH KG K STY  WWIRQ ITRAIA+ SR +R+PV+L+E +  +K  T   S  
Sbjct: 228 RAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQE 287

Query: 442 VQGKPVTVENLSSMLNVSTERITRALRTSQAKTRI-VSFDKSDDS 573
           ++ KP T E ++  + ++ E++    +++Q    +     K +DS
Sbjct: 288 MRRKP-TEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 331


>sp|Q59914|HRDD_STRGR RNA polymerase principal sigma factor hrdD
           OS=Streptomyces griseus GN=hrdD PE=3 SV=1
          Length = 332

 Score =  116 bits (291), Expect = 7e-26
 Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
 Frame = +1

Query: 82  ELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLILEGSKG 261
           E+ + S   S  EL ++V EGE A+   +R +LRLVV+VAR Y   G+ + DLI EG+ G
Sbjct: 73  EVDSDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAG 132

Query: 262 LLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSV-KVATNSL 438
           L+R +EKFD+ KG K STY  WWIRQ ITR+IA+ SR +R+PV+L E +  + +V     
Sbjct: 133 LVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFN 192

Query: 439 RVQGKPVTVENLSSMLNVSTERITRAL 519
           R  G+      +++ L+ + ER+T  L
Sbjct: 193 RENGRDPEPAEIAAELSSTPERVTDVL 219
tr_hit_id Q93V67
Definition tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens
Align length 187
Score (bit) 164.0
E-value 3.0e-39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911924|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_G10.
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens GN=Sig1 P...   164   3e-39
tr|A9SW01|A9SW01_PHYPA Plastid sigma factor SIG1 OS=Physcomitrel...   164   3e-39
tr|Q9ZTI2|Q9ZTI2_MAIZE RNA polymerase sigma factor 2 (Fragment) ...   154   3e-36
tr|O24348|O24348_SORBI Plastid RNA polymerase sigma factor OS=So...   154   3e-36
tr|Q7EY08|Q7EY08_ORYSJ Putative plastid RNA polymerase sigma fac...   154   3e-36
tr|Q7EY07|Q7EY07_ORYSJ Putative plastid RNA polymerase sigma fac...   154   3e-36
tr|Q0J7T6|Q0J7T6_ORYSJ Os08g0163400 protein (Fragment) OS=Oryza ...   154   3e-36
tr|O48655|O48655_ORYSJ Plastid RNA polymerase sigma factor OS=Or...   154   3e-36
tr|A3BPX7|A3BPX7_ORYSJ Putative uncharacterized protein OS=Oryza...   154   3e-36
tr|A2YRJ0|A2YRJ0_ORYSI Putative uncharacterized protein OS=Oryza...   154   3e-36
tr|Q9ZP70|Q9ZP70_WHEAT Chloroplast sigma factor (Fragment) OS=Tr...   152   2e-35
tr|Q9ZTI3|Q9ZTI3_MAIZE RNA polymerase sigma factor 1 (Fragment) ...   151   3e-35
tr|B4FP19|B4FP19_MAIZE Putative uncharacterized protein OS=Zea m...   151   3e-35
tr|Q9SLX4|Q9SLX4_TOBAC Sigma factor OS=Nicotiana tabacum GN=sigA...   141   3e-32
tr|Q9SLX3|Q9SLX3_TOBAC Sigma factor OS=Nicotiana tabacum GN=sigA...   140   4e-32
tr|A7PAZ2|A7PAZ2_VITVI Chromosome chr16 scaffold_10, whole genom...   140   6e-32
tr|Q116K5|Q116K5_TRIEI RNA polymerase sigma factor OS=Trichodesm...   138   2e-31
tr|O49935|O49935_SINAL Sig1 protein OS=Sinapis alba GN=Sig1 PE=2...   138   2e-31
tr|Q9T0P0|Q9T0P0_ARATH Sigma factorB (Fragment) OS=Arabidopsis t...   138   2e-31
tr|O24629|O24629_ARATH Sigma factor 1 (Plastid RNA polymerase si...   138   2e-31
tr|O22576|O22576_ARATH RNA polymerase sigma subunit 1 OS=Arabido...   138   2e-31
tr|O22057|O22057_ARATH Plastid RNA polymerase sigma-subunit OS=A...   138   2e-31
tr|Q9FPH1|Q9FPH1_ARATH At1g64860 OS=Arabidopsis thaliana GN=At1g...   137   4e-31
tr|B5VZJ5|B5VZJ5_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa...   137   5e-31
tr|Q017N3|Q017N3_OSTTA SigA (ISS) OS=Ostreococcus tauri GN=Ot06g...   136   7e-31
tr|Q2JS52|Q2JS52_SYNJA RNA polymerase sigma factor OS=Synechococ...   135   1e-30
tr|B4VTM7|B4VTM7_9CYAN RNA polymerase sigma factor, cyanobacteri...   135   1e-30
tr|Q2JJL6|Q2JJL6_SYNJB RNA polymerase sigma factor OS=Synechococ...   135   2e-30
tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten...   135   2e-30
tr|Q9KHE8|Q9KHE8_ANASP Group 2 sigma 70-type sigma factor D OS=A...   135   2e-30

>tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens GN=Sig1 PE=2
           SV=1
          Length = 677

 Score =  164 bits (415), Expect = 3e-39
 Identities = 83/187 (44%), Positives = 124/187 (66%)
 Frame = +1

Query: 1   TKQMRVCQSXXXXXXXXXXXXGYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHL 180
           +K++R+  +            GY PS E WA  +++S  +L+  + E E AR KMV  +L
Sbjct: 379 SKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEWARDKMVMANL 438

Query: 181 RLVVSVARAYENLGMDVADLILEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIA 360
           RLVVSVA+ Y + G+++ADLI EGS GLLRG+EKFDH +G K+STYVHWWIRQG+TRAIA
Sbjct: 439 RLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWWIRQGVTRAIA 498

Query: 361 EHSRLLRVPVYLHEIMVSVKVATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKT 540
           +HSR +R+PV++H+ +  ++ A ++L  +G   +V+ +S   N++  +I   L   Q   
Sbjct: 499 DHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEATNLTGTKIKNTL---QVTK 555

Query: 541 RIVSFDK 561
           ++VS DK
Sbjct: 556 KLVSLDK 562


>tr|A9SW01|A9SW01_PHYPA Plastid sigma factor SIG1 OS=Physcomitrella
           patens subsp. patens GN=PpSig1 PE=4 SV=1
          Length = 677

 Score =  164 bits (415), Expect = 3e-39
 Identities = 83/187 (44%), Positives = 124/187 (66%)
 Frame = +1

Query: 1   TKQMRVCQSXXXXXXXXXXXXGYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHL 180
           +K++R+  +            GY PS E WA  +++S  +L+  + E E AR KMV  +L
Sbjct: 379 SKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEWARDKMVMANL 438

Query: 181 RLVVSVARAYENLGMDVADLILEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIA 360
           RLVVSVA+ Y + G+++ADLI EGS GLLRG+EKFDH +G K+STYVHWWIRQG+TRAIA
Sbjct: 439 RLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWWIRQGVTRAIA 498

Query: 361 EHSRLLRVPVYLHEIMVSVKVATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKT 540
           +HSR +R+PV++H+ +  ++ A ++L  +G   +V+ +S   N++  +I   L   Q   
Sbjct: 499 DHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEATNLTGTKIKNTL---QVTK 555

Query: 541 RIVSFDK 561
           ++VS DK
Sbjct: 556 KLVSLDK 562


>tr|Q9ZTI2|Q9ZTI2_MAIZE RNA polymerase sigma factor 2 (Fragment)
           OS=Zea mays GN=sig2 PE=2 SV=1
          Length = 349

 Score =  154 bits (390), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 119/166 (71%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  AQS+ +S  EL + +RE  +AR  +   ++RLV+S+A  Y+NLG+D+ADLI
Sbjct: 77  GNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLI 136

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+A++S+  R+P YLHE +++++ 
Sbjct: 137 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLLAIRG 196

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A  +L  QG   T+EN++  LN+S +++  A   ++A  +++S D+
Sbjct: 197 AKYALEDQGIAPTIENIAESLNISVKKVHNA---TEAVHKVLSLDQ 239


>tr|O24348|O24348_SORBI Plastid RNA polymerase sigma factor
           OS=Sorghum bicolor GN=sig1 PE=2 SV=1
          Length = 500

 Score =  154 bits (390), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 120/166 (72%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  AQS+ +S  EL + +RE  +AR  +   ++RLV+S+A+ Y+NLG+++ADLI
Sbjct: 228 GNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLI 287

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+A++S+  R+P YLHE +++++ 
Sbjct: 288 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRG 347

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A  +L  QG   TVEN++  LN+S +++  A   ++A  +++S D+
Sbjct: 348 AKYALEDQGIAPTVENIAESLNISEKKVHNA---TEAVNKVLSLDQ 390


>tr|Q7EY08|Q7EY08_ORYSJ Putative plastid RNA polymerase sigma factor
           OS=Oryza sativa subsp. japonica GN=OJ9990_A01.116-1 PE=4
           SV=1
          Length = 388

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 116 GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 175

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 176 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 235

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 236 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 278


>tr|Q7EY07|Q7EY07_ORYSJ Putative plastid RNA polymerase sigma factor
           OS=Oryza sativa subsp. japonica GN=OJ9990_A01.116-2 PE=4
           SV=1
          Length = 342

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 70  GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 129

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 130 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 189

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 190 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 232


>tr|Q0J7T6|Q0J7T6_ORYSJ Os08g0163400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0163400 PE=4 SV=1
          Length = 417

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 145 GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 204

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 205 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 264

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 265 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 307


>tr|O48655|O48655_ORYSJ Plastid RNA polymerase sigma factor OS=Oryza
           sativa subsp. japonica GN=rsigA PE=2 SV=1
          Length = 519

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 247 GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 306

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 307 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 366

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 367 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 409


>tr|A3BPX7|A3BPX7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025099 PE=4 SV=1
          Length = 420

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 148 GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 207

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 208 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 267

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 268 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 310


>tr|A2YRJ0|A2YRJ0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27933 PE=4 SV=1
          Length = 372

 Score =  154 bits (389), Expect = 3e-36
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = +1

Query: 64  GYDPSYELWAQSVSMSTAELLSMVREGEIARHKMVRCHLRLVVSVARAYENLGMDVADLI 243
           G +PSY+  A S+ +S  EL S + E  +AR  +   +LRLV+S+A+ Y+NLG+++ADLI
Sbjct: 100 GNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLI 159

Query: 244 LEGSKGLLRGLEKFDHRKGLKVSTYVHWWIRQGITRAIAEHSRLLRVPVYLHEIMVSVKV 423
             G  GLLRG+EKFD  +G ++STYV+WWIRQG++RA+AE+S+  R+P YLHE +++++ 
Sbjct: 160 QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRG 219

Query: 424 ATNSLRVQGKPVTVENLSSMLNVSTERITRALRTSQAKTRIVSFDK 561
           A   L  QG   T+EN++  LN+S +++   L  ++A  +++S D+
Sbjct: 220 AKYELEDQGIAPTIENIAGSLNISEKKV---LNATEAVNKVLSLDQ 262