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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911943
Clone id YMU001_000011_A12
Library
Length 218
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTATAACACTCCCTCTGCCTCGAGGACACTCAATCTACTGAAGGACACCTTACAATGGT
GGTCCATGGAATCTATCAACAACTTTACAATGCAAACTTCTCAATCTGACCTTCCCGGTG
TTATATGGATAGGCTGCCAGCCCATGATATATCGCGGTAGCTTCCTCTTTTCGTCGAAGC
AGTGGCCGACCAAGTAACGTCCAAGTAGATGCCGTCAT
■■Homology search results ■■ -
sp_hit_id Q306W7
Definition sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine encephalitis virus (strain PE-3.0815)
Align length 24
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911943|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_A12.
         (218 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine en...    30   3.7  
sp|Q306W5|POLS_EEEV1 Structural polyprotein OS=Eastern equine en...    30   3.7  
sp|Q74HV0|LUXS_LACJO S-ribosylhomocysteine lyase OS=Lactobacillu...    30   4.8  
sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine en...    29   8.3  
sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine en...    29   8.3  
sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine enc...    29   8.3  

>sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain PE-3.0815) PE=3 SV=1
          Length = 1242

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  TPYNGGPWNLSTTLQCKLLNLTFP 117
           TP    PW+L TT+ C L N+TFP
Sbjct: 254 TPEGSEPWSL-TTVMCVLANITFP 276


>sp|Q306W5|POLS_EEEV1 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain PE-0.0155) PE=3 SV=1
          Length = 1242

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  TPYNGGPWNLSTTLQCKLLNLTFP 117
           TP    PW+L TT+ C L N+TFP
Sbjct: 254 TPEGSEPWSL-TTVMCVLANITFP 276


>sp|Q74HV0|LUXS_LACJO S-ribosylhomocysteine lyase OS=Lactobacillus
           johnsonii GN=luxS PE=3 SV=1
          Length = 158

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +3

Query: 3   YNTPSASRTLNLLKDTLQWWSMESINNFTMQTSQSDLPGVIWIGCQPMIYRGSFLFSSKQ 182
           + TPS +     LK++L+    E  +N T +    D+PG     C    YR   LFS+KQ
Sbjct: 88  WGTPSTTDVAKALKESLE----EIRDNITWE----DVPGTTIESCGN--YRDHSLFSAKQ 137

Query: 183 W 185
           W
Sbjct: 138 W 138


>sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine
           encephalitis virus (strain Florida 91-469) PE=3 SV=1
          Length = 1242

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  TPYNGGPWNLSTTLQCKLLNLTFP 117
           TP    PW+L+T + C L N+TFP
Sbjct: 254 TPEGSEPWSLATVM-CVLANITFP 276


>sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain va33[ten broeck]) PE=3 SV=1
          Length = 1240

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  TPYNGGPWNLSTTLQCKLLNLTFP 117
           TP    PW+L+T + C L N+TFP
Sbjct: 253 TPEGSEPWSLATVM-CVLANITFP 275


>sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine
           encephalitis virus PE=2 SV=1
          Length = 1239

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  TPYNGGPWNLSTTLQCKLLNLTFP 117
           TP    PW+L+T + C L N+TFP
Sbjct: 252 TPEGSEPWSLATVM-CVLANITFP 274
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911943|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_A12.
         (218 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******