BP911949
Clone id YMU001_000011_B09
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTGTTTTTTTTTTTTGTATCCAAAAGCAAAGCATTGTTTATTCACAATTTTCACCGTTG
ATTCCACACAACAAGGTTGTTGAGAATTGCTTTTTGTGACACTTCTGAGGTTGCATTGCT
TTGGAGATTGGATTTCAAAGATGCTCCAAATGAGGTGTGTCATTCTAGTCTTCCATCAAA
TTGTTTGGTCACATTGCTTCAACAAGCTTGTTGTAGCATTAAGTACTACTACTAGCAAGA
TATCAGATAGCAAGGTTGCAGCTCCTTTATTCTTAGTGAGAAAGGCCATTTAGATTCTCA
TGTGGACTCAAGACTGGTAGGTTTATCATCTTGTGTGAGTTGCAAGGAAGCCGTTTGCAC
CTGATAATTTTTGGCAATGTATCATCCACTGCAGCTACTACACATAACAAGGGCATTTGC
AACATAATAAAAACCTCTTCTCACGTTCAAGGCCAGCCACTGTGCTGAGTACCTGCAGGT
AATAT
■■Homology search results ■■ -
sp_hit_id Q9M1I1
Definition sp|Q9M1I1|FB304_ARATH F-box protein At3g54455/At3g54460 OS=Arabidopsis thaliana
Align length 28
Score (bit) 28.1
E-value 0.084
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911949|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B09.
(469 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9M1I1|FB304_ARATH F-box protein At3g54455/At3g54460 OS=Arabi... 28 0.084
sp|Q9M7C9|TPSDB_ABIGR Limonene/alpha-pinene synthase, chloroplas... 29 9.1
sp|O22340|TPSDA_ABIGR Limonene synthase, chloroplastic OS=Abies ... 29 9.1

>sp|Q9M1I1|FB304_ARATH F-box protein At3g54455/At3g54460
OS=Arabidopsis thaliana GN=At3g54455/At3g54460 PE=2 SV=1
Length = 1378

Score = 28.1 bits (61), Expect(2) = 0.084
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*N 116
YN+LVE + N L+ D ND H+E L N
Sbjct: 956 YNELVETVRRNILLADWNDPSHVESLLN 983



Score = 26.6 bits (57), Expect(2) = 0.084
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2

Query: 105 KQCNLRSVTKSNSQQPCCVESTVKIVN 25
KQ RS+T SN + CCV +K+ +
Sbjct: 985 KQWKFRSITISNVRLSCCVAGHIKMTD 1011


>sp|Q9M7C9|TPSDB_ABIGR Limonene/alpha-pinene synthase, chloroplastic
OS=Abies grandis GN=ag11 PE=1 SV=1
Length = 637

Score = 29.3 bits (64), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2

Query: 129 SIFEIQSPKQCNLRS-VTKSNSQQPCCVESTV 37
SI +Q PK C L+S ++ SN Q+ C+ + V
Sbjct: 5 SIVSLQVPKSCGLKSLISSSNVQKALCISTAV 36


>sp|O22340|TPSDA_ABIGR Limonene synthase, chloroplastic OS=Abies
grandis GN=ag10 PE=1 SV=1
Length = 637

Score = 29.3 bits (64), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2

Query: 129 SIFEIQSPKQCNLRS-VTKSNSQQPCCVESTV 37
SI +Q PK C L+S ++ SN Q+ C+ + V
Sbjct: 5 SIVSLQVPKSCGLKSLISSSNVQKALCISTAV 36


tr_hit_id Q234Z0
Definition tr|Q234Z0|Q234Z0_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 80
Score (bit) 37.0
E-value 0.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911949|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B09.
(469 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q234Z0|Q234Z0_TETTH Putative uncharacterized protein OS=Tetra... 37 0.50
tr|Q234N3|Q234N3_TETTH Putative uncharacterized protein OS=Tetra... 36 1.1
tr|Q5JL01|Q5JL01_ORYSJ Putative rad8 (Os01g0952200 protein) OS=O... 28 1.9
tr|B8A980|B8A980_ORYSI Putative uncharacterized protein OS=Oryza... 28 1.9
tr|A7Q5G6|A7Q5G6_VITVI Chromosome undetermined scaffold_53, whol... 29 1.9
tr|A3A1K6|A3A1K6_ORYSJ Putative uncharacterized protein OS=Oryza... 28 1.9
tr|A5BGE7|A5BGE7_VITVI Putative uncharacterized protein OS=Vitis... 29 1.9
tr|A9RKY8|A9RKY8_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 28 2.4
tr|B6HRP9|B6HRP9_PENCH Putative uncharacterized protein Pc22g251... 34 3.2
tr|A8G402|A8G402_PROM2 Small mechanosensitive ion channel, MscS ... 33 5.5
tr|Q4P899|Q4P899_USTMA Putative uncharacterized protein OS=Ustil... 33 7.1

>tr|Q234Z0|Q234Z0_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00095590 PE=4
SV=1
Length = 839

Score = 37.0 bits (84), Expect = 0.50
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +1

Query: 106 WRLDFKDAPNEVCHSSLPSNCLVTLLQQACCSIKYYY----*QDIR*QGCSSFILSEKGH 273
++L +D + VC SS+ SNC Q++C YYY +D Q C +K
Sbjct: 133 YKLMIRDINDNVCTSSVSSNCDQPSAQKSCDCPNYYYQNSSIKDSCDQACDDGSFFKKNG 192

Query: 274 LDSHVDSRLVGLSSCVSCKE 333
D L S C+ C+E
Sbjct: 193 CDCQKGYFLDNTSQCLKCQE 212


>tr|Q234N3|Q234N3_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00102650 PE=4
SV=1
Length = 1073

Score = 35.8 bits (81), Expect = 1.1
Identities = 17/79 (21%), Positives = 40/79 (50%)
Frame = +1

Query: 91 EVALLWRLDFKDAPNEVCHSSLPSNCLVTLLQQACCSIKYYY*QDIR*QGCSSFILSEKG 270
+ L+ + + D+ ++C PS+CL+ + Q C + Y + GC + ++++
Sbjct: 304 QACLINQGQYYDSSQKIC-GQCPSSCLICMSSQDCSVCQQNYQLNSLNNGCEACLINQGQ 362

Query: 271 HLDSHVDSRLVGLSSCVSC 327
+ DS+ + + L +C+ C
Sbjct: 363 YYDSNTKTCINCLQNCLKC 381


>tr|Q5JL01|Q5JL01_ORYSJ Putative rad8 (Os01g0952200 protein)
OS=Oryza sativa subsp. japonica GN=P0431G06.4 PE=4 SV=1
Length = 1298

Score = 27.7 bits (60), Expect(2) = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+L + N LM D ND H+E L NP
Sbjct: 896 YNELAVTIRRNILMADWNDPSHVESLLNP 924



Score = 26.2 bits (56), Expect(2) = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKI 31
+PKQ R+ T N + CCV +K+
Sbjct: 923 NPKQWKFRTTTIKNVRLSCCVAGHIKV 949


>tr|B8A980|B8A980_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05224 PE=4 SV=1
Length = 1298

Score = 27.7 bits (60), Expect(2) = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+L + N LM D ND H+E L NP
Sbjct: 896 YNELAVTIRRNILMADWNDPSHVESLLNP 924



Score = 26.2 bits (56), Expect(2) = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKI 31
+PKQ R+ T N + CCV +K+
Sbjct: 923 NPKQWKFRTTTIKNVRLSCCVAGHIKV 949


>tr|A7Q5G6|A7Q5G6_VITVI Chromosome undetermined scaffold_53, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00030933001 PE=4 SV=1
Length = 1294

Score = 29.3 bits (64), Expect(2) = 1.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+LV + N LM D ND H+E L NP
Sbjct: 891 YNELVVTVRRNILMADWNDPSHVESLLNP 919



Score = 24.6 bits (52), Expect(2) = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKIVN 25
+PKQ R T N + CCV +K+ +
Sbjct: 918 NPKQWKFRISTIKNVRLSCCVAGHIKVTD 946


>tr|A3A1K6|A3A1K6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_004678 PE=4 SV=1
Length = 1274

Score = 27.7 bits (60), Expect(2) = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+L + N LM D ND H+E L NP
Sbjct: 872 YNELAVTIRRNILMADWNDPSHVESLLNP 900



Score = 26.2 bits (56), Expect(2) = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKI 31
+PKQ R+ T N + CCV +K+
Sbjct: 899 NPKQWKFRTTTIKNVRLSCCVAGHIKV 925


>tr|A5BGE7|A5BGE7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032626 PE=4 SV=1
Length = 1208

Score = 29.3 bits (64), Expect(2) = 1.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+LV + N LM D ND H+E L NP
Sbjct: 797 YNELVVTVRRNILMADWNDPSHVESLLNP 825



Score = 24.6 bits (52), Expect(2) = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKIVN 25
+PKQ R T N + CCV +K+ +
Sbjct: 824 NPKQWKFRISTIKNVRLSCCVAGHIKVTD 852


>tr|A9RKY8|A9RKY8_PHYPA SNF2 family DNA-dependent ATPase
OS=Physcomitrella patens subsp. patens GN=CHR1501 PE=4
SV=1
Length = 1128

Score = 27.7 bits (60), Expect(2) = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2

Query: 111 SPKQCNLRSVTKSNSQQPCCVESTVKI 31
+PKQ RS T N++ CCV +K+
Sbjct: 798 NPKQWKFRSSTLRNTRLSCCVAGHIKV 824



Score = 25.8 bits (55), Expect(2) = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1

Query: 199 YNKLVEAM*PNNLMED*NDTPHLEHL*NP 113
YN+LV + N L+ D D H+E L NP
Sbjct: 771 YNELVVTVQRNILLADWRDPSHVESLLNP 799


>tr|B6HRP9|B6HRP9_PENCH Putative uncharacterized protein Pc22g25100
OS=Penicillium chrysogenum Wisconsin 54-1255
GN=Pc22g25100 PE=3 SV=1
Length = 105

Score = 34.3 bits (77), Expect = 3.2
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2

Query: 71 LLFVTLLRLHCFG-DWISKMLQMRCVILVFHQIVWSHCFNKLVVALSTTTSKISDSKV 241
L+FVTLL H F DW++ L R I V H +W+ C V A++ + +SD V
Sbjct: 5 LVFVTLLHFHPFAVDWMAWCLPTRFRISVDHVAMWNEC--TPVSAIAAGPAALSDVSV 60


>tr|A8G402|A8G402_PROM2 Small mechanosensitive ion channel, MscS
family OS=Prochlorococcus marinus (strain MIT 9215)
GN=mscS PE=4 SV=1
Length = 343

Score = 33.5 bits (75), Expect = 5.5
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2

Query: 104 FGDWISKMLQMRCVILVFHQIVWSHCFNKLVV-ALSTTTSKISDSKVAAPLFLVRKAI*I 280
F D I+ + + ++ +F I+ NK+++ +L+ +TSKI+DS +++ +F + I
Sbjct: 73 FADEITFISVLLNILKLFILIIIIKALNKVLIRSLTESTSKINDSSISSMIFSLTPLIKA 132

Query: 281 LMWT 292
L WT
Sbjct: 133 LTWT 136