NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911950
Clone id YMU001_000011_B10
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCCAATTCACTACCCAGAACAGTTCAAGATCATTATCTTCTCGGGAAGATGTGGGAAG
ATAGGTTAAAAGTTGACGAGAGAGCTGCTAGTTTCAACCGGGCAAACATGCATATATCGA
ATGCTTCGCAAATGCCGAATGCATCGATGTTTTCTGTTCAGCTTCCAAGAATCCAGGGAA
TTTCCGACCCTTTAGTACCAGCCTCAGTGAGCTATATTGGTGCTCCAATGAATGGAGCGG
GATCATTGCACGGAGCTGAATCTCCTGGGCAGAGCATGGTTTTGAGGGCCAAGGAAGAGC
AGGATGAGGGCAGTTTAAGCTCTTGGCCCTCCAGTTATGTTAAAGCCTCCTCGTCTCAAA
GTAATGTTCAAAGACTTGCACAGGGTCCATAGCAAAGAGGACTTTCCCTTGAAGTGTGCC
TTCAAGGAAGGTCAGATGCTTGATACTGACGGAGTCCTCAACAAACATAACGATCTTTCC
TACTG
■■Homology search results ■■ -
sp_hit_id Q8R0S1
Definition sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor ATF-7 OS=Mus musculus
Align length 55
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911950|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B10.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor A...    32   2.0  
sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis...    31   2.6  
sp|Q5R9C9|ATF7_PONAB Cyclic AMP-dependent transcription factor A...    31   2.6  
sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription factor A...    31   2.6  
sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN...    30   4.4  
sp|Q03012|SPP1_YEAST COMPASS component SPP1 OS=Saccharomyces cer...    30   4.4  
sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus norv...    30   4.4  
sp|P68342|VG67_EHV1K Uncharacterized gene 67 protein OS=Equine h...    30   5.7  
sp|Q6LAQ8|VG67_EHV1B Uncharacterized gene 67 protein OS=Equine h...    30   5.7  
sp|O14335|SCR1_SCHPO DNA-binding protein scr1 OS=Schizosaccharom...    30   5.7  
sp|Q9JIL5|TULP4_MOUSE Tubby-related protein 4 OS=Mus musculus GN...    29   9.8  
sp|P19246|NFH_MOUSE Neurofilament heavy polypeptide OS=Mus muscu...    29   9.8  
sp|P41797|HSP71_CANAL Heat shock protein SSA1 OS=Candida albican...    29   9.8  

>sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor
           ATF-7 OS=Mus musculus GN=Atf7 PE=1 SV=1
          Length = 413

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 108 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 266
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 197 MHLANGQTMPMLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNNSGSISPSGHP 251


>sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis
           thaliana GN=FBL15 PE=1 SV=2
          Length = 990

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 102 ANMHISNASQMPNASMFSVQLPRI 173
           AN+HI NAS  PN S+ SV LP +
Sbjct: 421 ANLHILNASYCPNISLESVHLPML 444


>sp|Q5R9C9|ATF7_PONAB Cyclic AMP-dependent transcription factor
           ATF-7 OS=Pongo abelii GN=ATF7 PE=2 SV=1
          Length = 483

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 108 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 266
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 197 MHLANGQTMPVLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNSSGSISPSGHP 251


>sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription factor
           ATF-7 OS=Homo sapiens GN=ATF7 PE=1 SV=2
          Length = 494

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 108 MHISNASQMPNASMFSVQLPRIQGISDP--LVPASVSYIGAPMNGAGSLHGAESP 266
           MH++N   MP      VQ+P +  ++ P  +VP      G P+N +GS+  +  P
Sbjct: 208 MHLANGQTMPVLPGPPVQMPSVISLARPVSMVPNIPGIPGPPVNSSGSISPSGHP 262


>sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens
            GN=TULP4 PE=1 SV=2
          Length = 1543

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 322  ELKLPSSCSSLALKTMLCPGDSAPCNDPAPF 230
            E K+P  CSS  L  +  P  S P  DP P+
Sbjct: 931  EKKVPQPCSSATLNRLTVPRYSIPTGDPPPY 961


>sp|Q03012|SPP1_YEAST COMPASS component SPP1 OS=Saccharomyces
           cerevisiae GN=SPP1 PE=1 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +1

Query: 7   IHYPEQFKIIIFSGRCG--KIG*KLTRELLVSTGQTCIYRML--RKCRMHRCFLFSFQES 174
           +H PEQFK ++FS  C   + G     +  +  G+  + + L  RKCR+  C+    Q+S
Sbjct: 51  LHIPEQFKDLVFSFYCPYCQAGITGKNKDAIINGEGSLPKTLWKRKCRISDCYKPCLQDS 110

Query: 175 R 177
           +
Sbjct: 111 K 111


>sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus
           norvegicus GN=Nefh PE=1 SV=4
          Length = 1072

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
 Frame = +3

Query: 222 APMNGAGSLHGA-----------ESPGQSMVLRAKEEQDEGSLSSWPSSYVKASSSQSNV 368
           AP++G GSLH A            + G S    +       S+S+ PS +  A+SS  ++
Sbjct: 16  APLHGGGSLHYALSRKAGAGGTRSAAGSSSGFHSWARTSVSSVSASPSRFRGAASSTDSL 75

Query: 369 QRLAQGP 389
             L+ GP
Sbjct: 76  DTLSNGP 82


>sp|P68342|VG67_EHV1K Uncharacterized gene 67 protein OS=Equine
           herpesvirus 1 (strain Kentucky A) GN=IR6 PE=4 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
 Frame = +3

Query: 147 MFSVQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESP---------------GQSMV 281
           +F   L R +  + P +  + ++  A   GA +  G E+P               G+S  
Sbjct: 15  VFRCALARRRNANPPHLVLAPTFAAAAAGGAANSSGEEAPRGERKHLFNPFGCMLGRSYF 74

Query: 282 LRAKEEQDEGSLSSWPSSYVKASSSQ 359
            R +EE +EG  +  P+ Y   + S+
Sbjct: 75  RRCREEMNEGYFAKVPTGYFPVAPSE 100


>sp|Q6LAQ8|VG67_EHV1B Uncharacterized gene 67 protein OS=Equine
           herpesvirus 1 (strain Ab4p) GN=IR6 PE=4 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
 Frame = +3

Query: 147 MFSVQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESP---------------GQSMV 281
           +F   L R +  + P +  + ++  A   GA +  G E+P               G+S  
Sbjct: 15  VFRCALARRRNANPPHLVLAPTFAAAAAGGAANSSGEEAPRGERKHLFNPFGCMLGRSYF 74

Query: 282 LRAKEEQDEGSLSSWPSSYVKASSSQ 359
            R +EE +EG  +  P+ Y   + S+
Sbjct: 75  RRCREEMNEGYFAKVPTGYFPVAPSE 100


>sp|O14335|SCR1_SCHPO DNA-binding protein scr1
           OS=Schizosaccharomyces pombe GN=scr1 PE=2 SV=1
          Length = 565

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/71 (35%), Positives = 33/71 (46%)
 Frame = +3

Query: 156 VQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESPGQSMVLRAKEEQDEGSLSSWPSS 335
           VQLP I+ +S  L P+ V  I  P+    +   A +P    V R        SLS+  SS
Sbjct: 436 VQLPSIRSLS--LRPSQVPLI-PPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSS 492

Query: 336 YVKASSSQSNV 368
                +SQSNV
Sbjct: 493 MPHKPASQSNV 503
tr_hit_id B4I261
Definition tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia
Align length 60
Score (bit) 36.2
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911950|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B10.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia GN=GM1868...    36   0.82 
tr|Q9VE45|Q9VE45_DROME CG7709 OS=Drosophila melanogaster GN=CG77...    36   1.1  
tr|Q41817|Q41817_MAIZE Heat shock protein 70 kDa (Fragment) OS=Z...    35   1.8  
tr|Q22AU5|Q22AU5_TETTH SLEI family protein OS=Tetrahymena thermo...    35   1.8  
tr|B5JX45|B5JX45_9GAMM Fumarate hydratase, class II OS=gamma pro...    35   2.4  
tr|A7HE84|A7HE84_ANADF DNA primase small subunit OS=Anaeromyxoba...    33   7.0  
tr|B8KV98|B8KV98_9GAMM Macrolide export ATP-binding/permease pro...    33   9.1  
tr|B0MXR8|B0MXR8_9BACT Putative uncharacterized protein OS=Alist...    33   9.1  
tr|Q5EBY7|Q5EBY7_MAIZE Heat shock protein 70 (Fragment) OS=Zea m...    33   9.1  
tr|B4MBC0|B4MBC0_DROVI GJ14320 OS=Drosophila virilis GN=GJ14320 ...    33   9.1  

>tr|B4I261|B4I261_DROSE GM18689 OS=Drosophila sechellia GN=GM18689
           PE=4 SV=1
          Length = 678

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 189 PLVPASVSYIGAPMNGAGSLHGAESPGQSMVLRAKEE-QDEGSLSSWPSSYVKASSSQSN 365
           P+ P S SY GAP +G+GS  G+ S   S +  A  +    GS  S PSS   A S+ +N
Sbjct: 283 PIAPPSSSY-GAPSSGSGSSSGSFSASPSSLYSAPSKGSSGGSFPSAPSSSYSAPSASAN 341


>tr|Q9VE45|Q9VE45_DROME CG7709 OS=Drosophila melanogaster GN=CG7709
           PE=2 SV=1
          Length = 950

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 189 PLVPASVSYIGAPMNGAGSLHGAESPGQSMVLRAKEE-QDEGSLSSWPSSYVKASSSQSN 365
           P+ P S SY GAP +G+GS  G+ S   S +  A  +    GS  S PSS   A S+ +N
Sbjct: 553 PISPPSSSY-GAPSSGSGSSSGSFSAAPSSLYSAPSKGSSGGSFQSAPSSSYSAPSASAN 611


>tr|Q41817|Q41817_MAIZE Heat shock protein 70 kDa (Fragment) OS=Zea
           mays GN=hsp70-5 PE=2 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = +3

Query: 3   ANSLPRTVQDHYLLGKMWEDRLKVDERAASFNRANMHISNASQMPNASMFSVQLPRIQGI 182
           A ++  T++D  +  K+  D  K  E A     A +   +A+Q+  A  F  ++  ++ +
Sbjct: 122 AYNMRNTIKDEKIASKLAADDKKKIEDAID---AAISWLDANQLAEADEFDDKMKELESL 178

Query: 183 SDPLVPASVSYIGAPMNGAGSLH-----GAESPG 269
           S+P++       GA M GAG +      G+ +PG
Sbjct: 179 SNPIIAKMYQGAGADMGGAGGMDEDAPAGSGAPG 212


>tr|Q22AU5|Q22AU5_TETTH SLEI family protein OS=Tetrahymena thermophila
            SB210 GN=TTHERM_01156780 PE=4 SV=1
          Length = 2397

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
 Frame = +3

Query: 12   LPRTVQDHYLLGKMWEDRLKVDERAASFNRA----NMHISNASQMPNA----SMFSVQLP 167
            +P+ V+ HY LG++++D+  +DE   S+ RA    + +I+   Q+ NA     MF   L 
Sbjct: 1687 VPKCVETHYHLGRVYQDQNMLDEAIGSYQRAIELDSKYINAYIQLGNAYLDKPMFDQALE 1746

Query: 168  RIQGI--SDPLVPASVSYIG 221
              + I   DP  P + + IG
Sbjct: 1747 TYKKILEIDPQKPVAYNNIG 1766


>tr|B5JX45|B5JX45_9GAMM Fumarate hydratase, class II OS=gamma
           proteobacterium HTCC5015 GN=fumC PE=4 SV=1
          Length = 458

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +3

Query: 102 ANMHISNASQMPNASMFS-VQLPRIQGISDPLVPASVSYIGAPMNGAGSLHGAESPGQSM 278
           AN HI N  Q  N ++ S + +     ISD L+PA    +    N A  +      G++ 
Sbjct: 124 ANDHI-NCGQSSNDTIPSCIHISASLQISDQLLPALEHLVNVTRNKAQQVDNCVKTGRTH 182

Query: 279 VLRAKEEQDEGSLSSWPS----SYVKASSSQSNVQRLAQG 386
           ++ A   +   SL++W      +  +  S Q++VQ LAQG
Sbjct: 183 LMDAMPVRLSQSLNAWADQIAHNITRIQSLQASVQSLAQG 222


>tr|A7HE84|A7HE84_ANADF DNA primase small subunit
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2830
           PE=4 SV=1
          Length = 427

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
 Frame = +3

Query: 120 NASQMPNASMFSVQLPRIQGISDPL-----------------VPASVSYIGAPMNGAGSL 248
           NA     AS +SV+      +S P+                 VPA V+ +G P  GAG  
Sbjct: 232 NAKDRTTASAYSVRPTPDARVSTPITWDELPACDPADFTLRTVPARVAAMGDP--GAGID 289

Query: 249 HGAESPGQSMVLRAKEEQDEGSLSSWPSSYVKASSSQSNVQ 371
             A S    + L A++  D    + WP  Y KA+   S VQ
Sbjct: 290 ASAGSLLPLLELSARQRADGMGDAPWPPHYAKAADEPSRVQ 330


>tr|B8KV98|B8KV98_9GAMM Macrolide export ATP-binding/permease
           protein MacB 1 OS=gamma proteobacterium NOR51-B
           GN=NOR51B_1193 PE=4 SV=1
          Length = 399

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = +3

Query: 15  PRTVQDHYLLGKMWEDRLKV-------DERAASFNRANMHISNASQMPNASMFSVQLPRI 173
           P T++D   LG++ E    V       +  A S +R         +MP A   SV + R 
Sbjct: 83  PLTLEDALALGQLPEVEAVVPFVQGNAEVEAGSLHRRTTVYGAGPEMPKAFRISVSMGRF 142

Query: 174 QGISDPLVPASVSYIGAPM 230
             + +PL P +++ +G+ M
Sbjct: 143 LPLDNPLAPRALAVLGSKM 161


>tr|B0MXR8|B0MXR8_9BACT Putative uncharacterized protein
           OS=Alistipes putredinis DSM 17216 GN=ALIPUT_01929 PE=4
           SV=1
          Length = 392

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -3

Query: 468 MFVEDSVSIKHLTFLEGTLQGKVLFAMD---PVQVFEHYFETRRL*HNWRAKSLNCPHPA 298
           +FV D       TF  GTL    +F  D   P+ VFE   E R    NW   S  CP P 
Sbjct: 112 IFVRDHTGYYPATFYSGTLPISGIFYQDGTKPIFVFE---EGRLTYTNWTYPSFPCPSPM 168

Query: 297 LPWP 286
           L  P
Sbjct: 169 LGDP 172


>tr|Q5EBY7|Q5EBY7_MAIZE Heat shock protein 70 (Fragment) OS=Zea mays
           PE=2 SV=1
          Length = 373

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +3

Query: 3   ANSLPRTVQDHYLLGKMWEDRLKVDERAASFNRANMHISNASQMPNASMFSVQLPRIQGI 182
           A ++  T++D  +  K+  D  K  E A     A +   +A+Q+  A  F  ++  ++ +
Sbjct: 276 AYNMRNTIKDEKIASKLAADDKKKIEDAID---AAISWLDANQLAEADEFDDKMKELESL 332

Query: 183 SDPLVPASVSYIGAPMNGAGSLH-----GAESPG 269
            +P++       GA M GAG +      G+  PG
Sbjct: 333 CNPIIAKMYQGAGADMGGAGGMDEDAPAGSGGPG 366


>tr|B4MBC0|B4MBC0_DROVI GJ14320 OS=Drosophila virilis GN=GJ14320
           PE=4 SV=1
          Length = 692

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 177 GISDPLVPASVSYIGAPMNGAGSLHGAESPGQSMVLRAKEEQDEGSLSSWPSSYVKASSS 356
           G   P   A  S  GAP +   S + A +P  S +  +      GS +S PSS   A SS
Sbjct: 358 GSGGPYPAAPSSSYGAPSSAPSSSYSAPAPSNSYLAPSSGTSSGGSYASAPSSSYSAPSS 417

Query: 357 QSN 365
            S+
Sbjct: 418 GSS 420