| BP911952 |
| Clone id |
YMU001_000011_B12 |
| Library |
YMU01 |
| Length |
480 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000011_B12. |
| Accession |
BP911952 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GTAGATATTACCTGCAGGTACTCTCCCTTGGGATGCATTGATAAAAGGTTATGCTCATGA
GGAACAGGTTCCAGAAGATTTGGTGGGCGGTTTTTGGCAAATGCTTACTTAGCCAGAGCT
TCTCTCCATATGCGCTTCAAAAGGACGTGTAACATGGGCTCATGAGGAACAGGCTTCAAG
AAGATTTGGTGGGCTGTTTTTGGCAAATGCTTATTTAGCCAGGGCTTCTCTCCATATGCG
CTTCAGAAGAACGTGTAACATGGGCTCATGAGGAACAGGTTCAAGAAAATTTGGTGGGCT
GTTTTTGGCAAATGCTTACTTAGCCAGCGCTTCTCTCCATATGCGCTTCAAAAGGTCTCC
AAATGCAATCATCTATGATTGCATTTTGGAGGGGAGTGGCATGTGAGACGAAACGTTCCC
ATACACGATTATTATACATTTTGGCTTCCTTTTTTGAGATGTTTCTTGGTATGCCTTTAT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q6NXH2 |
| Definition |
sp|Q6NXH2|MANEA_MOUSE Glycoprotein endo-alpha-1,2-mannosidase OS=Mus musculus |
| Align length |
38 |
| Score (bit) |
31.6 |
| E-value |
1.9 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911952|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B12.
(480 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6NXH2|MANEA_MOUSE Glycoprotein endo-alpha-1,2-mannosidase OS... 32 1.9
sp|Q5GF25|MANEA_RAT Glycoprotein endo-alpha-1,2-mannosidase OS=R... 30 5.6
sp|Q92521|PIGB_HUMAN GPI mannosyltransferase 3 OS=Homo sapiens G... 30 7.4
sp|A2SMF1|MNMG_METPP tRNA uridine 5-carboxymethylaminomethyl mod... 30 7.4
sp|Q5VSG8|MANEL_HUMAN Glycoprotein endo-alpha-1,2-mannosidase-li... 30 7.4
sp|A8F4R2|RL4_THELT 50S ribosomal protein L4 OS=Thermotoga letti... 29 9.6
sp|Q64610|ENPP2_RAT Ectonucleotide pyrophosphatase/phosphodieste... 29 9.6
sp|P32577|CSK_RAT Tyrosine-protein kinase CSK OS=Rattus norvegic... 29 9.6
sp|P41241|CSK_MOUSE Tyrosine-protein kinase CSK OS=Mus musculus ... 29 9.6
sp|P41240|CSK_HUMAN Tyrosine-protein kinase CSK OS=Homo sapiens ... 29 9.6
sp|Q929Z2|NADB_LISIN L-aspartate oxidase OS=Listeria innocua GN=... 29 9.8
>sp|Q6NXH2|MANEA_MOUSE Glycoprotein endo-alpha-1,2-mannosidase
OS=Mus musculus GN=Manea PE=2 SV=1
Length = 462
Score = 31.6 bits (70), Expect = 1.9
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 218 LNKHLPK-TAHQIFLKPVPHEPMLHVLLKRIWREALAK 108
+ K +PK TA+ I+L PH+P L++ L R W E +K
Sbjct: 411 IEKAVPKRTANTIYLDYRPHKPSLYLELTRKWSEKFSK 448
>sp|Q5GF25|MANEA_RAT Glycoprotein endo-alpha-1,2-mannosidase
OS=Rattus norvegicus GN=Manea PE=1 SV=1
Length = 462
Score = 30.0 bits (66), Expect = 5.6
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 218 LNKHLPK-TAHQIFLKPVPHEPMLHVLLKRIWREALAK 108
+ K +PK TA+ ++L PH+P L++ + R W E +K
Sbjct: 411 IEKAVPKRTANTVYLDYRPHKPSLYLEITRKWSEKYSK 448
>sp|Q92521|PIGB_HUMAN GPI mannosyltransferase 3 OS=Homo sapiens
GN=PIGB PE=2 SV=1
Length = 554
Score = 29.6 bits (65), Expect = 7.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 208 ICQKQPTKSS*SLFLMSPCYTS 143
+C P KSS S+F+M PC+++
Sbjct: 421 VCYNNPNKSSASIFIMMPCHST 442
>sp|A2SMF1|MNMG_METPP tRNA uridine 5-carboxymethylaminomethyl
modification enzyme mnmG OS=Methylibium petroleiphilum
(strain PM1) GN=mnmG PE=3 SV=1
Length = 667
Score = 29.6 bits (65), Expect = 7.4
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -2
Query: 326 WLSKHLPKTAHQIFLNLFLMSPCYTFF*SAYGEK------PWLNKHLPKTAHQIFLKP 171
W++ H + H+I + F SP +T G + +N+ KT+HQIFL+P
Sbjct: 244 WIT-HTSERTHEIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKTSHQIFLEP 300
>sp|Q5VSG8|MANEL_HUMAN Glycoprotein endo-alpha-1,2-mannosidase-like
protein OS=Homo sapiens GN=MANEAL PE=2 SV=1
Length = 457
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 218 LNKHLPK-TAHQIFLKPVPHEPMLHVLLKRIWREALAK 108
+ K +PK T +++L +PH+P L++ L R W E K
Sbjct: 413 IEKAIPKKTPTRLYLDYLPHQPSLYLELTRRWAEHFIK 450
>sp|A8F4R2|RL4_THELT 50S ribosomal protein L4 OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=rplD PE=3 SV=1
Length = 226
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 242 SAYGEKPWLNKHLPKTAHQIFLKPV-PHEPMLHVLLKRIWREALAK 108
S G KPW+ KH + H P+ H + H R W + L K
Sbjct: 58 SGGGRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPK 103
>sp|Q64610|ENPP2_RAT Ectonucleotide
pyrophosphatase/phosphodiesterase family member 2
OS=Rattus norvegicus GN=Enpp2 PE=1 SV=2
Length = 887
Score = 29.3 bits (64), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -2
Query: 320 SKHLPKTAHQIFLNLFLMSPCYTFF*SAYGEKPWLNKHLPKTAHQIFLKPVPHEPMLHVL 141
SK+ PKT I NL P F KP++ +HLPK H + + +H+L
Sbjct: 400 SKYDPKT---IIANLTCKKPDQHF-------KPYMKQHLPKRLHYANNRRIED---IHLL 446
Query: 140 LKRIWREA 117
+ R W A
Sbjct: 447 VDRRWHVA 454
>sp|P32577|CSK_RAT Tyrosine-protein kinase CSK OS=Rattus norvegicus
GN=Csk PE=1 SV=1
Length = 450
Score = 29.3 bits (64), Expect = 9.6
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 203 ANAYLARASLHMRFRRTCNMGS*GTGSRKFGGLFLANAYLASASL--HMRFKRSPNAIIY 376
A A+LA AS+ + R + + G + GGL++ Y+A SL ++R R + +
Sbjct: 230 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-SRGRSVLGG 288
Query: 377 DCILEGS 397
DC+L+ S
Sbjct: 289 DCLLKFS 295
>sp|P41241|CSK_MOUSE Tyrosine-protein kinase CSK OS=Mus musculus
GN=Csk PE=1 SV=1
Length = 450
Score = 29.3 bits (64), Expect = 9.6
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 203 ANAYLARASLHMRFRRTCNMGS*GTGSRKFGGLFLANAYLASASL--HMRFKRSPNAIIY 376
A A+LA AS+ + R + + G + GGL++ Y+A SL ++R R + +
Sbjct: 230 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-SRGRSVLGG 288
Query: 377 DCILEGS 397
DC+L+ S
Sbjct: 289 DCLLKFS 295
>sp|P41240|CSK_HUMAN Tyrosine-protein kinase CSK OS=Homo sapiens
GN=CSK PE=1 SV=1
Length = 450
Score = 29.3 bits (64), Expect = 9.6
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 203 ANAYLARASLHMRFRRTCNMGS*GTGSRKFGGLFLANAYLASASL--HMRFKRSPNAIIY 376
A A+LA AS+ + R + + G + GGL++ Y+A SL ++R R + +
Sbjct: 230 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-SRGRSVLGG 288
Query: 377 DCILEGS 397
DC+L+ S
Sbjct: 289 DCLLKFS 295
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q5YXG2 |
| Definition |
tr|Q5YXG2|Q5YXG2_NOCFA Putative DNA-binding protein OS=Nocardia farcinica |
| Align length |
68 |
| Score (bit) |
35.8 |
| E-value |
1.1 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911952|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_B12.
(480 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q5YXG2|Q5YXG2_NOCFA Putative DNA-binding protein OS=Nocardia ... 36 1.1
tr|A7PE43|A7PE43_VITVI Chromosome chr11 scaffold_13, whole genom... 33 7.0
tr|A5BQ03|A5BQ03_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|Q5HZ84|Q5HZ84_XENLA MGC132047 protein OS=Xenopus laevis GN=MG... 33 7.0
tr|Q2TAH6|Q2TAH6_XENLA MGC132047 protein OS=Xenopus laevis GN=en... 33 7.0
tr|A2SJP5|A2SJP5_METPP Putative uncharacterized protein OS=Methy... 33 7.0
tr|Q1NMJ8|Q1NMJ8_9DELT Putative uncharacterized protein OS=delta... 33 7.0
tr|B4WMD7|B4WMD7_9SYNE Transcriptional regulator, TetR family pr... 33 7.0
tr|Q0BUJ3|Q0BUJ3_GRABC Thiamin pyrophosphokinase OS=Granulibacte... 33 9.2
tr|A6QVG9|A6QVG9_AJECN Ubiquitin carboxyl-terminal hydrolase OS=... 33 9.2
>tr|Q5YXG2|Q5YXG2_NOCFA Putative DNA-binding protein OS=Nocardia
farcinica GN=NFA_22820 PE=4 SV=1
Length = 287
Score = 35.8 bits (81), Expect = 1.1
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Frame = -2
Query: 191 HQIFLKPV---------PHEPMLHVLLKRIWREALAK*AF---AKNRPPNLLEPVPHEHN 48
H + L PV HEP V++ R+W L A PP+LLEP P+ +
Sbjct: 91 HDVSLAPVRAALETMLTAHEPYPAVVVDRLWNVLLGNAAMPILTAGLPPHLLEPAPNVYR 150
Query: 47 LLSMHPKG 24
++ +HP+G
Sbjct: 151 MV-LHPQG 157
>tr|A7PE43|A7PE43_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016524001
PE=4 SV=1
Length = 903
Score = 33.1 bits (74), Expect = 7.0
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 456 QKRKPKCIIIVYGNVSSHMPLPSKMQS*MIAFGDLLKRIWREALAK*AFAKNSPPNFLEP 277
Q+++ +C+ + N SS L +K+ + G+L+ R + +A SPP+ ++
Sbjct: 91 QQQQRRCVGCCHANCSSRYKLSTKVAKKLRGVGELVDRGTFDTVAD----SGSPPDAVKE 146
Query: 276 VPHEPM--LHVLLKRIWREALA 217
+P PM L V+L+++ R+ LA
Sbjct: 147 IPTRPMYGLDVMLEKV-RQFLA 167
>tr|A5BQ03|A5BQ03_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013393 PE=4 SV=1
Length = 928
Score = 33.1 bits (74), Expect = 7.0
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 456 QKRKPKCIIIVYGNVSSHMPLPSKMQS*MIAFGDLLKRIWREALAK*AFAKNSPPNFLEP 277
Q+++ +C+ + N SS L +K+ + G+L+ R + +A SPP+ ++
Sbjct: 140 QQQQRRCVGCCHANCSSRYKLSTKVAKKLRGVGELVDRGTFDTVAD----SGSPPDAVKE 195
Query: 276 VPHEPM--LHVLLKRIWREALA 217
+P PM L V+L+++ R+ LA
Sbjct: 196 IPTRPMYGLDVMLEKV-RQFLA 216
>tr|Q5HZ84|Q5HZ84_XENLA MGC132047 protein OS=Xenopus laevis
GN=MGC132047 PE=2 SV=1
Length = 874
Score = 33.1 bits (74), Expect = 7.0
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = -2
Query: 320 SKHLPKTAHQIFLNLFLMSPCYTFF*SAYGEKPWLNKHLPKTAHQIFLKPVPHEPMLHVL 141
SKH PK + NL P F KP+L +HLPK H F + + +H+L
Sbjct: 400 SKHDPKA---VVANLTCKKPDQHF-------KPYLKQHLPKRLHYAFNRRIED---IHLL 446
Query: 140 LKRIWREA 117
+ R W A
Sbjct: 447 VDRKWHVA 454
>tr|Q2TAH6|Q2TAH6_XENLA MGC132047 protein OS=Xenopus laevis GN=enpp2
PE=2 SV=1
Length = 874
Score = 33.1 bits (74), Expect = 7.0
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = -2
Query: 320 SKHLPKTAHQIFLNLFLMSPCYTFF*SAYGEKPWLNKHLPKTAHQIFLKPVPHEPMLHVL 141
SKH PK + NL P F KP+L +HLPK H F + + +H+L
Sbjct: 400 SKHDPKA---VVANLTCKKPDQHF-------KPYLKQHLPKRLHYAFNRRIED---IHLL 446
Query: 140 LKRIWREA 117
+ R W A
Sbjct: 447 VDRKWHVA 454
>tr|A2SJP5|A2SJP5_METPP Putative uncharacterized protein
OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A2830
PE=4 SV=1
Length = 268
Score = 33.1 bits (74), Expect = 7.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 152 LHVLLKRIWREALAK*AFAKNRPPNLLEPVPHEHNLLSMHP 30
LH ++ +WR + A + P L EP PHEH LL+ P
Sbjct: 164 LHWAVEPLWRALQTQAAQPADGEPELPEPEPHEHCLLAWRP 204
>tr|Q1NMJ8|Q1NMJ8_9DELT Putative uncharacterized protein OS=delta
proteobacterium MLMS-1 GN=MldDRAFT_2983 PE=3 SV=1
Length = 294
Score = 33.1 bits (74), Expect = 7.0
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 14 AGTLPWDALIKGYAHEEQVPEDLVGGFWQMLT*PELLSI 130
+G +P++A I+ E +VPE+ GFW L P+L+ +
Sbjct: 162 SGGMPFEAAIEAVYREAEVPEEQEPGFWLELAQPQLVRL 200
>tr|B4WMD7|B4WMD7_9SYNE Transcriptional regulator, TetR family
protein OS=Synechococcus sp. PCC 7335 GN=S7335_2569 PE=4
SV=1
Length = 206
Score = 33.1 bits (74), Expect = 7.0
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 308 PKTAHQIFLNLFLMSPCYTFF*SAYGEKPWLNKHLPKTAHQIFLKPVPHEP 156
PK +IFL +F +S SA G P K + +T IFL V HEP
Sbjct: 155 PKVVARIFLGMFTVSGFSQTTMSADGSSPQDMKEMAETLADIFLNGVLHEP 205
>tr|Q0BUJ3|Q0BUJ3_GRABC Thiamin pyrophosphokinase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
GN=GbCGDNIH1_0611 PE=4 SV=1
Length = 306
Score = 32.7 bits (73), Expect = 9.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 8 LPAGTLPWDALIKGYAHEEQVPEDLV 85
+PAG P+DALIK A E +PE LV
Sbjct: 178 IPAGHTPFDALIKEAAEEASIPETLV 203
>tr|A6QVG9|A6QVG9_AJECN Ubiquitin carboxyl-terminal hydrolase
OS=Ajellomyces capsulata (strain NAm1 / WU24)
GN=HCAG_01376 PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 9.2
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = -2
Query: 317 KHLPK----TAHQIFLNLFLMSPCYTFF*SAYGEKPWLNK-HLPKTAHQIFLKPVPHEPM 153
+HLP+ H+ FL FL S S + LNK HL + LKP+PH
Sbjct: 357 RHLPRFRDMRTHKSFLVSFLKS-------SMTSVRRQLNKFHLLDPTFLLLLKPIPHPQH 409
Query: 152 LHVLLKRIWREALAK*AFAKNRPPNLLEP 66
+ L K W+ A NR P L+P
Sbjct: 410 PNSLWKDGWKS-------ATNRDPQSLDP 431
|