BP911953
Clone id YMU001_000011_C03
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GATTGTGTGGGGCATTCCAGAGAGCAGTTTTTTAGCACAATTTTGTGTAGTTTTTATGCG
TGTGCGGATACAACTTGAGCTAACTATAGCTCGTAAGTAGAAAGTTCACAAGTTTTGGGA
TTTTTGGACAGGTATAGGTCCATAGAACTGCTCGTTCAAGAGTGTGCTTGTTTGCCAAAG
TTTTGGCATTTTATGTATACCATTTGTGAATCTATTTGTTGACACTGAATGCCTGTTTTC
ATGCGGTTTTGTTGAGATTTTGTGAGTTTTCATTCAGTTTTCAGGGGAAACTCTGCTGGA
TTTTTCCCAGTTTCTCACCATGTTTTATGTGTATCTGCAATTTTACTCTCTGATGGTTTA
GTGGCCAAGTTTGATTCGCACTTTGACAAGTTTTGTCAGTTTGGACACATTTTTGTGTTC
TTCTACCCACTCTCTCAGGAGTGAGGATTGCGCATGCTTGTGTGGCTACAGACAGACATT
CATAGGTCTCATAGG
■■Homology search results ■■ -
sp_hit_id P38164
Definition sp|P38164|YBK4_YEAST WD repeat-containing protein YBL104C OS=Saccharomyces cerevisiae
Align length 69
Score (bit) 31.6
E-value 2.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911953|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C03.
(495 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P38164|YBK4_YEAST WD repeat-containing protein YBL104C OS=Sac... 32 2.1
sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4 ... 30 4.6
sp|O26979|XERCL_METTH Probable tyrosine recombinase xerC-like OS... 30 8.0

>sp|P38164|YBK4_YEAST WD repeat-containing protein YBL104C
OS=Saccharomyces cerevisiae GN=YBL104C/YBL103C-A PE=1
SV=2
Length = 1038

Score = 31.6 bits (70), Expect = 2.1
Identities = 16/69 (23%), Positives = 38/69 (55%)
Frame = -2

Query: 350 ESKIADTHKTW*ETGKNPAEFPLKTE*KLTKSQQNRMKTGIQCQQIDSQMVYIKCQNFGK 171
+ ++ + +T+ + K+ F ++ + +S+ +R KTG+ I + +YI+CQN +
Sbjct: 827 DQRVDEWIQTYRDMLKSWELFSMRARFDVLRSKLSRTKTGVLTADIKPRQIYIQCQNCKQ 886

Query: 170 QAHS*TSSS 144
++ +SS
Sbjct: 887 NINTPRTSS 895


>sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4
PE=2 SV=2
Length = 841

Score = 30.4 bits (67), Expect = 4.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2

Query: 266 VFIQFSGETLLDFSQFLTMFYVYLQFYSLMV*WPSLIRTLTSFVSLDTFLCSSTHSLRSE 445
+F + + T+LD S+ F+SL L + +SLDTFL HSLR
Sbjct: 491 IFTELTNLTVLDLSKCQLEQVAQTAFHSLSS-LQVLNMSHNKLLSLDTFLYEPLHSLRIL 549

Query: 446 DCA 454
DC+
Sbjct: 550 DCS 552


>sp|O26979|XERCL_METTH Probable tyrosine recombinase xerC-like
OS=Methanobacterium thermoautotrophicum GN=MTH_893 PE=3
SV=1
Length = 311

Score = 29.6 bits (65), Expect = 8.0
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1

Query: 336 RYT*NMVRNWEKSSRVSPEN*MKTHKISTKPHENRHSVSTNRFTNG--IHKMPKLWQTST 163
RY M++N+ + + + K PH RHS +T+ NG I + +L S
Sbjct: 236 RYVQMMIKNYARKAGI---------KKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSN 286

Query: 162 LLNEQFYGPIPVQKSQNL 109
L Q Y + +Q +N+
Sbjct: 287 LSTTQIYTSVDMQTLKNV 304


tr_hit_id Q63773
Definition tr|Q63773|Q63773_RAT Putative uncharacterized protein OS=Rattus norvegicus
Align length 69
Score (bit) 34.7
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911953|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C03.
(495 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q63773|Q63773_RAT Putative uncharacterized protein OS=Rattus ... 35 2.5
tr|A2GGW2|A2GGW2_TRIVA Putative uncharacterized protein OS=Trich... 35 2.5
tr|A2ES48|A2ES48_TRIVA Beige/BEACH domain containing protein OS=... 34 3.3
tr|Q16MH2|Q16MH2_AEDAE Putative uncharacterized protein OS=Aedes... 33 7.3
tr|Q16L02|Q16L02_AEDAE Putative uncharacterized protein OS=Aedes... 33 7.3
tr|A9JX46|A9JX46_PHANO Putative uncharacterized protein OS=Phaeo... 33 7.3

>tr|Q63773|Q63773_RAT Putative uncharacterized protein OS=Rattus
norvegicus GN=LOC362308 PE=4 SV=1
Length = 268

Score = 34.7 bits (78), Expect = 2.5
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2

Query: 149 CSF--KSVLVCQSFGILCIPFVNLFVDTECLFSCGFVEIL*VFIQ-FSGETLLDFSQFLT 319
CSF S+ + SF L + N F CL S GF + VF++ F G L F
Sbjct: 110 CSFLIASISIFNSFNCLIVFSWNSFQGFLCLLSMGFYLFIYVFLEFFQGFLCLLSMGFYL 169

Query: 320 MFYVYLQFY 346
YV+L+F+
Sbjct: 170 FIYVFLEFF 178


>tr|A2GGW2|A2GGW2_TRIVA Putative uncharacterized protein
OS=Trichomonas vaginalis G3 GN=TVAG_069090 PE=4 SV=1
Length = 236

Score = 34.7 bits (78), Expect = 2.5
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +2

Query: 167 LVCQSFGILCIPFVNLFVDTECLFSCGFVEIL*VFIQFSGETLLDFSQFLTMFYVYLQFY 346
L+C +FG L P + FVD L V L +++F+ LL LT Y Y Q +
Sbjct: 97 LICNAFGWLLTPIDDSFVDDFFLLFNSLVTSL--YVEFNESILLSLHMCLT--YYYKQGF 152

Query: 347 SLMV*WPSLIRTLTSFVSLDTF 412
S + SL + LT F+ ++ F
Sbjct: 153 S-QIPQKSLTQLLTIFLHMNNF 173


>tr|A2ES48|A2ES48_TRIVA Beige/BEACH domain containing protein
OS=Trichomonas vaginalis G3 GN=TVAG_453020 PE=4 SV=1
Length = 2260

Score = 34.3 bits (77), Expect = 3.3
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +2

Query: 167 LVCQSFGILCIPFVNLFVDTECLFSCGFVEIL*VFIQFSGETLLDFSQFLTMFYVYLQFY 346
L+C +FG L P + FVD L V L +++F+ LL LT Y Y Q +
Sbjct: 97 LICNAFGWLLTPIDDSFVDDFFLLFNSLVTSL--YVEFNESILLSLHMCLT--YYYKQGF 152

Query: 347 SLMV*WPSLIRTLTSFVSLDTF 412
S + SL + LT F+ ++ F
Sbjct: 153 S-QIPQKSLTQLLTIFLHMNKF 173


>tr|Q16MH2|Q16MH2_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL012293 PE=4 SV=1
Length = 863

Score = 33.1 bits (74), Expect = 7.3
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +2

Query: 302 FSQFLTMFYVYLQFYSLMV*WPSLIRTLTSFVSLDTF--------LCSSTHSLRSEDCAC 457
F + M++ +L FY+ M+ W S++ L F L TF +C+ ++ C
Sbjct: 203 FGVKVAMYFAWLGFYTHMLIWASIVGLLCFFYGLLTFRDNRISQDICNDNTTIMCPQCDA 262

Query: 458 LCGY 469
C Y
Sbjct: 263 KCDY 266


>tr|Q16L02|Q16L02_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL012806 PE=4 SV=1
Length = 895

Score = 33.1 bits (74), Expect = 7.3
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +2

Query: 302 FSQFLTMFYVYLQFYSLMV*WPSLIRTLTSFVSLDTF--------LCSSTHSLRSEDCAC 457
F + M++ +L FY+ M+ W S++ L F L TF +C+ ++ C
Sbjct: 235 FGVKVAMYFAWLGFYTHMLIWASIVGLLCFFYGLLTFRDNRISQDICNDNTTIMCPQCDA 294

Query: 458 LCGY 469
C Y
Sbjct: 295 KCDY 298


>tr|A9JX46|A9JX46_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_20054 PE=4 SV=1
Length = 150

Score = 33.1 bits (74), Expect = 7.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3

Query: 445 LTPERVGRRTQKCVQTDKTCQSANQTWPLNHQRVKLQIHI-KHGEKLGKIQQSFP*KLNE 269
+ P + R T C + + Q ++ WP NH + + H+ + G K K QQ P N
Sbjct: 1 MQPTKDNRATTSCSECQRRKQRCSREWPCNHCQARKVAHLCQFGAK--KAQQESPPDSNR 58

Query: 268 NSQN 257
S N
Sbjct: 59 ESSN 62