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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911955
Clone id YMU001_000011_C05
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAGAACCTTGTGATGCAATTTCTTGGCCAGTTGATGATATGCTTACCTCATGGGCTTCA
ACAGTGTGCCCCTTCCCTGTCCACGCTGCTTCAAAAGTGTCTGAAAGATCAGGTAATACA
GGAAATTGCCCTTCAGATAAAGTTCTTCGCACTAGAAGATCATCTTCCTCGAGCACATGA
GAGTAAAAACTACAATTGTCCTCACCCATCTTGAGATCGGCTCTTCCCTCCACTGATGGT
AAATTATCTGCAATTAACAATGGCCTGCTGTGCAGTTTGTACAAGTCTTCAACAATTTCT
ACAGATGCTGGCAACTCTGTCATATCAATATTCTGATCACGAAGGACAAGATTTGGAGGA
GCCAAATCATTTCTAGGTTCTAGCTCAGCAGAAAACTCAAAGTTTTGTTTGGCATCTTCA
CCACCTGATAAGACATTACGTGGTGAGTCTCCAGAGTTACCCGTCAACTCATTTGTATGA
GCTACCTCAGATTTCTGTAGTTCCGAGTACCTGCAGGTAATATCTCA
■■Homology search results ■■ -
sp_hit_id Q9HBD1
Definition sp|Q9HBD1|RC3H2_HUMAN Ring finger and CCCH-type zinc finger domain-containing protein 2 OS=Homo sapiens
Align length 59
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911955|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C05.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HBD1|RC3H2_HUMAN Ring finger and CCCH-type zinc finger doma...    32   1.4  
sp|Q4L5E9|MUTS2_STAHJ MutS2 protein OS=Staphylococcus haemolytic...    31   4.1  
sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat...    30   7.1  
sp|Q5KUX3|RBSA_GEOKA Ribose import ATP-binding protein rbsA OS=G...    30   7.1  
sp|Q9W6M9|GALA_COTJA Galanin OS=Coturnix coturnix japonica GN=GA...    30   7.1  
sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repe...    30   9.2  
sp|Q81495|POLG_HCVK3 Genome polyprotein OS=Hepatitis C virus gen...    30   9.2  
sp|P38894|FLO5_YEAST Flocculation protein FLO5 OS=Saccharomyces ...    30   9.2  

>sp|Q9HBD1|RC3H2_HUMAN Ring finger and CCCH-type zinc finger
           domain-containing protein 2 OS=Homo sapiens GN=RC3H2
           PE=1 SV=2
          Length = 1191

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/59 (42%), Positives = 32/59 (54%)
 Frame = +1

Query: 265 LLCSLYKSSTISTDAGNSVISIF*SRRTRFGGAKSFLGSSSAENSKFCLASSPPDKTLR 441
           LL  +  ++T++T AGN VIS+  S  T      S  G S+AENS   L S   D TLR
Sbjct: 459 LLNKVGVNNTVTTTAGN-VISVIGSTETTGKIVPSTNGISNAENSVSQLISRSTDSTLR 516


>sp|Q4L5E9|MUTS2_STAHJ MutS2 protein OS=Staphylococcus haemolyticus
           (strain JCSC1435) GN=mutS2 PE=3 SV=1
          Length = 783

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = -1

Query: 191 SFYSHVLEEDDLLVRRTLSEGQFPVLPDLSDTFEA---------AWTGKGHTVEAHEVSI 39
           +FY+ +LEED+ +V+  +   +   LP LSD F+           +    + ++     I
Sbjct: 104 TFYNQLLEEDEQVVKYPILNDKMNQLPILSDLFQEINEKCDTHDLYDSASYELQGIRSKI 163

Query: 38  SSTGQEI 18
           SST Q I
Sbjct: 164 SSTNQRI 170


>sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide
           repeat-containing protein beta OS=Rattus norvegicus
           GN=Sgtb PE=1 SV=1
          Length = 304

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 419 EDAKQNFEFSAELEPRNDLAPPNLVLRDQNIDMTELPASVEIVEDLYKLHSRPLLI 252
           E+A  +++ + +L+P ND    NL + +Q +     P    +  D+  L + P  I
Sbjct: 170 EEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLTFDMASLINNPAFI 225


>sp|Q5KUX3|RBSA_GEOKA Ribose import ATP-binding protein rbsA
           OS=Geobacillus kaustophilus GN=rbsA PE=3 SV=1
          Length = 494

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -1

Query: 479 HTNELTGNSGDSPRNVLSGGEDAKQNFEFSAELEPRNDLAPPNLVLRDQNIDMTELPASV 300
           H   +  +S D P   LSGG   K  F     + PR       +++ D+     ++ A  
Sbjct: 378 HLLNIKASSPDLPVKALSGGNQQKVVFGKWLAMNPR-------ILILDEPTRGVDVGAKK 430

Query: 299 EIVEDLYKLHSRP---LLIADNLPSVEGRADLKM 207
           EI E + +L ++    ++I+  LP V G +D  M
Sbjct: 431 EIYEVINELAAQGAAIIMISSELPEVLGMSDRVM 464


>sp|Q9W6M9|GALA_COTJA Galanin OS=Coturnix coturnix japonica GN=GAL
           PE=3 SV=2
          Length = 117

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 410 KQNFEFSAELEPRNDLAPPNL--VLRDQNIDMTELPASVEIVEDLYKLHSRPLLIADNLP 237
           K  F    E++P  D+   N+   L D+NI  T       +VE L  LH +     DNLP
Sbjct: 57  KHGFTGKREIQPEEDIKAGNIGRPLADENIVRT-------VVEFLTYLHLKEAGALDNLP 109

Query: 236 SVE 228
           S E
Sbjct: 110 SPE 112


>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide
           repeat-containing protein beta OS=Homo sapiens GN=SGTB
           PE=1 SV=1
          Length = 304

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -1

Query: 419 EDAKQNFEFSAELEPRNDLAPPNLVLRDQNIDMTELPASVEIVEDLYKLHSRPLLIA 249
           E+A  +++ + +L+P ND    NL + +Q +     P    +  D+  L + P  I+
Sbjct: 170 EEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFIS 226


>sp|Q81495|POLG_HCVK3 Genome polyprotein OS=Hepatitis C virus genotype
            3a (isolate k3a) PE=3 SV=3
          Length = 3021

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 194  CSFYSHVLEEDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTVEAHEVS 42
            CS+Y     E  + +R  LS    PV  D  D +E+ +TG  H ++AH +S
Sbjct: 1531 CSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDLWESVFTGLTH-IDAHFLS 1580


>sp|P38894|FLO5_YEAST Flocculation protein FLO5 OS=Saccharomyces
           cerevisiae GN=FLO5 PE=2 SV=1
          Length = 1075

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
 Frame = +1

Query: 199 SSPILRSALPSTDGKL---SAINNGLLCSL-----YKSSTISTDAGNSVISIF*SRRTRF 354
           S PI+    PS    +   S I++ +  SL     + SS++ + +  +  SIF    T  
Sbjct: 652 SRPIITPFYPSNGTSVISSSVISSSVTSSLVTSSSFISSSVISSSTTTSTSIFSESSTSS 711

Query: 355 GGAKSFLGSSSAENSKFCLASSPPDKTLRGESPELPVNS 471
               S   S S+E+     +SS    ++  ESP+ P NS
Sbjct: 712 VIPTSSSTSGSSESKTSSASSSSSSSSISSESPKSPTNS 750
tr_hit_id A4Q7Q7
Definition tr|A4Q7Q7|A4Q7Q7_MEDTR Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type OS=Medicago truncatula
Align length 62
Score (bit) 48.9
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911955|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C05.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4Q7Q7|A4Q7Q7_MEDTR Chaperonin Cpn60/TCP-1; Phosphatidylinosi...    49   2e-04
tr|Q84MW6|Q84MW6_ORYSJ Putative phosphatidylinositol 3,5-kinase ...    48   3e-04
tr|Q0DRB6|Q0DRB6_ORYSJ Os03g0399500 protein OS=Oryza sativa subs...    48   3e-04
tr|A3AIU2|A3AIU2_ORYSJ Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|A7P6B5|A7P6B5_VITVI Chromosome chr9 scaffold_7, whole genome ...    47   8e-04
tr|A5C675|A5C675_VITVI Putative uncharacterized protein OS=Vitis...    47   8e-04
tr|Q6ZLF2|Q6ZLF2_ORYSJ 1-phosphatidylinositol-3-phosphate 5-kina...    45   0.002
tr|Q0J5A8|Q0J5A8_ORYSJ Os08g0450800 protein (Fragment) OS=Oryza ...    45   0.002
tr|B8BB93|B8BB93_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A9RSW1|A9RSW1_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.002
tr|A3BTP9|A3BTP9_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q751U8|Q751U8_ASHGO AFR727Wp OS=Ashbya gossypii GN=AFR727W PE...    37   0.47 
tr|B4MME3|B4MME3_DROWI GK16737 OS=Drosophila willistoni GN=GK167...    34   4.0  
tr|Q7RFF6|Q7RFF6_PLAYO SPRY domain, putative OS=Plasmodium yoeli...    34   5.2  
tr|B3MNH3|B3MNH3_DROAN GF15650 OS=Drosophila ananassae GN=GF1565...    34   5.2  
tr|A7T9Y7|A7T9Y7_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   5.2  
tr|A5EVS2|A5EVS2_DICNV Intracellular septation protein A OS=Dich...    33   6.7  
tr|A5KLS7|A5KLS7_9FIRM Putative uncharacterized protein OS=Rumin...    33   6.7  
tr|B4JSP1|B4JSP1_DROGR GH17757 OS=Drosophila grimshawi GN=GH1775...    33   6.7  
tr|Q9C450|Q9C450_PENPX Cytochrome P450 monooxygenase OS=Penicill...    33   6.7  
tr|A8NTQ4|A8NTQ4_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   6.7  
tr|Q3M9U3|Q3M9U3_ANAVT Possible Transcriptional Regulator, Fis f...    33   8.8  
tr|B1PHV8|B1PHV8_SPOEX Fork head domain transcription factor OS=...    33   8.8  

>tr|A4Q7Q7|A4Q7Q7_MEDTR Chaperonin Cpn60/TCP-1;
            Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger,
            FYVE/PHD-type OS=Medicago truncatula
            GN=MtrDRAFT_AC183502g30v2 PE=4 SV=1
          Length = 1730

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
 Frame = -1

Query: 233  VEGRADLKMGEDNCSFYSHVLEEDDLL-----VRRTLSEGQFPVLPDLSDTFEAAWTGKG 69
            V+ + + K  + N S    + ++ DLL     VRR LSEG FPV+P LS+T +A WTG+ 
Sbjct: 1231 VKNKQNEKEEQPNLSISKSINDQSDLLEPELGVRRALSEGPFPVVPSLSETLDAKWTGEN 1290

Query: 68   HT 63
             +
Sbjct: 1291 QS 1292


>tr|Q84MW6|Q84MW6_ORYSJ Putative phosphatidylinositol 3,5-kinase
            (Phosphatidylinositol-4-phosphate 5-kinase family
            protein, putative, expressed) OS=Oryza sativa subsp.
            japonica GN=LOC_Os03g28140 PE=4 SV=1
          Length = 1818

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 167  EDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTVEAHEV 45
            E D++ RRTLSEGQFP L D+S+  +A WTGK   V +  +
Sbjct: 1289 ESDIVARRTLSEGQFPSLLDVSNALDAKWTGKNDPVPSSAI 1329


>tr|Q0DRB6|Q0DRB6_ORYSJ Os03g0399500 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0399500 PE=4 SV=1
          Length = 1837

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 167  EDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTVEAHEV 45
            E D++ RRTLSEGQFP L D+S+  +A WTGK   V +  +
Sbjct: 1289 ESDIVARRTLSEGQFPSLLDVSNALDAKWTGKNDPVPSSAI 1329


>tr|A3AIU2|A3AIU2_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_010714 PE=4 SV=1
          Length = 1830

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 167  EDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTVEAHEV 45
            E D++ RRTLSEGQFP L D+S+  +A WTGK   V +  +
Sbjct: 1289 ESDIVARRTLSEGQFPSLLDVSNALDAKWTGKNDPVPSSAI 1329


>tr|A7P6B5|A7P6B5_VITVI Chromosome chr9 scaffold_7, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00034003001
            PE=4 SV=1
          Length = 1222

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 167  EDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGH 66
            E  ++VRR LS+GQFP+  DLS T +A WTG+ H
Sbjct: 1157 ESGVVVRRALSDGQFPIAEDLSHTLDAKWTGENH 1190


>tr|A5C675|A5C675_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_043718 PE=4 SV=1
          Length = 1893

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 167  EDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGH 66
            E  ++VRR LS+GQFP+  DLS T +A WTG+ H
Sbjct: 1275 ESGVVVRRALSDGQFPIAEDLSHTLDAKWTGENH 1308


>tr|Q6ZLF2|Q6ZLF2_ORYSJ 1-phosphatidylinositol-3-phosphate
            5-kinase-like OS=Oryza sativa subsp. japonica
            GN=OJ1005_H01.27 PE=4 SV=1
          Length = 1821

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 170  EEDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTV 60
            +E  + VRR LS+GQFPV  D+SDT +A W G+  TV
Sbjct: 1293 QESSIGVRRVLSDGQFPVNADISDTLDAKWRGENGTV 1329


>tr|Q0J5A8|Q0J5A8_ORYSJ Os08g0450800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0450800 PE=4 SV=1
          Length = 817

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 170 EEDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTV 60
           +E  + VRR LS+GQFPV  D+SDT +A W G+  TV
Sbjct: 289 QESSIGVRRVLSDGQFPVNADISDTLDAKWRGENGTV 325


>tr|B8BB93|B8BB93_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_29434 PE=4 SV=1
          Length = 1831

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 170  EEDDLLVRRTLSEGQFPVLPDLSDTFEAAWTGKGHTV 60
            +E  + VRR LS+GQFPV  D+SDT +A W G+  TV
Sbjct: 1303 QESSIGVRRVLSDGQFPVNADISDTLDAKWRGENGTV 1339


>tr|A9RSW1|A9RSW1_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_40158 PE=4 SV=1
          Length = 1273

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
 Frame = -1

Query: 398  EFSAELEPRNDLAPPNLVLRDQNIDMTELPASVEIVEDLYKLHSRPLL-IADNLPSVEGR 222
            E + E E  +DL P    + + +  +++  A+ E+V +   L     L +  N PS  GR
Sbjct: 756  ETNPEPEGADDLGPSAEQIDEDSDTLSDSAANGEVVGENPALTGESALDVVSNKPSTLGR 815

Query: 221  ADLKMGEDNCSFYSHVLEED-----DLLVRRTLSEGQFPVLPDLSDTFEAAWTGKG 69
                    + S  +   + D     +    R+LSEG FP++ DL DT EAAW G+G
Sbjct: 816  -QTSSPLPSSSLGTQTEDTDSPASGETAHPRSLSEGHFPIMVDLPDTLEAAWRGEG 870