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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911961
Clone id YMU001_000011_C12
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCATTATATCCTGTGCACCAGGACGAGTTTGCAGCTAGGGTTTCAGATGCAACTCCTCTT
CATTTCTCTCCGGATAAGCGAGCCTTTAGCATCCAGCAAGATCCATTCGCATCAGAGTTT
ATGCACCTGCATTCAGACGCGTTACCTGGTTGTGAGGAGCAGATTACGAGGAATACTCGC
ATTCCAGATGCAGCTCCCCATTTTCTGCCAGATGACCCTTTTAATGGAAATGAGCAGGGA
TTACTGATTTTACCCTCTTCTCAAGTACCCATCCTCCCAGAATCTCTCCACATGGATTCT
CTCCCAGTTTTACCCTTATCATCTCCAGCACTTTCGGCTGACGCACCTTGTCCACCCTCG
CCGCTGTCAACATCTCAGGCCATGTCTCCTGCACCAAATGCCACAGGTCAACAATCCTTG
TCACAGACCCGCCCAGCAATCACACTGTCCTTCTACTCTCGCTCTCAGAAACCAAAAGCG
AAAACTTTGCCCATCATCTTACCCACGAAGTCAGCTCAGTCTACTCTCTCATCAGAAGAA
CAGCACAGCCATGAAATCTTTTTCCCATG
■■Homology search results ■■ -
sp_hit_id Q3U7U4
Definition sp|Q3U7U4|CA162_MOUSE Transmembrane protein C1orf162 homolog OS=Mus musculus
Align length 73
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911961|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C12.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3U7U4|CA162_MOUSE Transmembrane protein C1orf162 homolog OS=...    32   1.7  
sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegi...    32   2.9  
sp|A2TJV2|PALM3_MOUSE Paralemmin-3 OS=Mus musculus GN=Palm3 PE=2...    31   3.8  
sp|P53947|YNF8_YEAST Uncharacterized protein YNL058C OS=Saccharo...    31   4.9  
sp|Q9HCJ0|TNR6C_HUMAN Trinucleotide repeat-containing gene 6C pr...    30   6.4  
sp|P22934|TNR1A_RAT Tumor necrosis factor receptor superfamily m...    30   6.4  
sp|P25118|TNR1A_MOUSE Tumor necrosis factor receptor superfamily...    30   6.4  
sp|P16143|PO2F1_XENLA POU domain, class 2, transcription factor ...    30   6.4  
sp|Q01301|CCG4_NEUCR Clock-controlled pheromone ccg-4 OS=Neurosp...    30   6.4  
sp|Q747I7|UVRC_GEOSL UvrABC system protein C OS=Geobacter sulfur...    30   8.4  
sp|Q88QJ9|FDHE_PSEPK Protein fdhE homolog OS=Pseudomonas putida ...    30   8.4  

>sp|Q3U7U4|CA162_MOUSE Transmembrane protein C1orf162 homolog OS=Mus
           musculus PE=2 SV=1
          Length = 132

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 258 FSSTHPPRIS-PHGFSPSFTLIISSTFG*RTLSTLAAVNISGHV-SCTKCHRSTILVTDP 431
           FS+T P   S P+ F+P    II + F    L+ L    I   V SC KCH S+    DP
Sbjct: 15  FSTTAPVTSSTPYFFNPKKEHIILAFFAGVLLTLLIVALIFLIVKSCRKCH-SSAQTQDP 73

Query: 432 PSNHTVLLLSLSE 470
           PS     L SLS+
Sbjct: 74  PSEPPTKLSSLSK 86


>sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegicus
           GN=Dzip1l PE=2 SV=1
          Length = 776

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 394 PNATGQQSLSQTRPAITLSFYSRSQKPKAKTLPIILPTKSAQSTLSSEEQHS 549
           P   GQ  +   R  +     +R  +PK +TL + LP+K A+ + S+   HS
Sbjct: 533 PQPDGQPPVKSQRTTLA----TREVRPKTRTLTVALPSKPAEPSTSTPRGHS 580


>sp|A2TJV2|PALM3_MOUSE Paralemmin-3 OS=Mus musculus GN=Palm3 PE=2
           SV=1
          Length = 734

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 136 DALPGCEEQITRNTRIPDAAPHFLPDDPFNGNEQGLLILPSSQ 264
           +A P     + + T +PDA     P+ P +  E+ + +LP+S+
Sbjct: 144 EAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIAVLPASR 186


>sp|P53947|YNF8_YEAST Uncharacterized protein YNL058C
           OS=Saccharomyces cerevisiae GN=YNL058C PE=1 SV=1
          Length = 316

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 43  SDATPLHFSPDKRAFSIQQDPF----ASEFMHLHSDALPGCEEQITRNTRIPDAAPHFLP 210
           +D+  L+    K + S+Q +PF       +M    D++   E     +++  DAA  F P
Sbjct: 130 NDSKNLYRGHHKHSSSLQSNPFDINDEKSYMQDDWDSMSQLE-----SSQYEDAASPFNP 184

Query: 211 -DDPFNGNEQGLLILPSSQV 267
             DPF  N + L I P+ QV
Sbjct: 185 IQDPFTDNRRSLFISPTLQV 204


>sp|Q9HCJ0|TNR6C_HUMAN Trinucleotide repeat-containing gene 6C
           protein OS=Homo sapiens GN=TNRC6C PE=1 SV=3
          Length = 1690

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 218 GSSGRKWGAASGMRVFLVICSSQPGNASECRCINSDANGSCW 93
           GS+ R WG A+G    L  CS   G+      I    + +CW
Sbjct: 46  GSAARVWGVATGSSSGLAHCSVSGGDGKMDTMIGDGRSQNCW 87


>sp|P22934|TNR1A_RAT Tumor necrosis factor receptor superfamily
           member 1A OS=Rattus norvegicus GN=Tnfrsf1a PE=2 SV=2
          Length = 461

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 384 VSCTKCHRSTILVTDPPS 437
           + CTKCH+ T LV+D PS
Sbjct: 57  ICCTKCHKGTYLVSDCPS 74


>sp|P25118|TNR1A_MOUSE Tumor necrosis factor receptor superfamily
           member 1A OS=Mus musculus GN=Tnfrsf1a PE=1 SV=1
          Length = 454

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 384 VSCTKCHRSTILVTDPPS 437
           + CTKCH+ T LV+D PS
Sbjct: 57  ICCTKCHKGTYLVSDCPS 74


>sp|P16143|PO2F1_XENLA POU domain, class 2, transcription factor 1
           OS=Xenopus laevis GN=pou2f1 PE=2 SV=2
          Length = 760

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 252 TLFSSTHPPRISPHGF---SPSFTLIISSTFG*RTLSTLAAVNISGHVSCTKCHRSTILV 422
           +LFSS +P   S       SP+ TL ++      + + + + +I G    +  + +T++ 
Sbjct: 470 SLFSSPNPLVASTPSLVTSSPATTLTVNPVLPLTSAAAITSFHIPGTTGTSSANTATVIS 529

Query: 423 TDPPSNHTVLLLSLSETKSENFA 491
           T PP +  +   SLS + S   A
Sbjct: 530 TAPPVSSVLTSPSLSSSPSATAA 552


>sp|Q01301|CCG4_NEUCR Clock-controlled pheromone ccg-4 OS=Neurospora
           crassa GN=ccg-4 PE=2 SV=2
          Length = 299

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
 Frame = -3

Query: 396 WCRRHGLRC*QRR----GWTRCVSRKCWR**G-----*NWERIHVERFWE 274
           WCR HG  C ++R     W R   + CW+          W RIH +  W+
Sbjct: 127 WCRIHGQSCWKKREAEAQWCRIHGQSCWKRDALPEAEPQWCRIHGQSCWK 176


>sp|Q747I7|UVRC_GEOSL UvrABC system protein C OS=Geobacter
           sulfurreducens GN=uvrC PE=3 SV=1
          Length = 613

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 272 SSQNLSTWILSQFYP-YHLQHFRLTHLVHPRRCQHLRPCLLHQMPQVNNPCH 424
           SS + +  +L Q Y  + L+H+ L      RR     PCL +Q+ Q   PCH
Sbjct: 131 SSASAAREVLKQLYKLFPLRHYPLESCRRRRR-----PCLFYQLRQCAAPCH 177
tr_hit_id B5J4K4
Definition tr|B5J4K4|B5J4K4_9RHOB Putative uncharacterized protein OS=Octadecabacter antarcticus 307
Align length 31
Score (bit) 36.2
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911961|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_C12.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5J4K4|B5J4K4_9RHOB Putative uncharacterized protein OS=Octad...    36   1.3  
tr|Q9DW84|Q9DW84_RCMVM PR115 OS=Rat cytomegalovirus (strain Maas...    34   5.0  
tr|B2RWG3|B2RWG3_MOUSE Gm912 protein OS=Mus musculus GN=Gm912 PE...    34   5.0  
tr|B7QEZ5|B7QEZ5_IXOSC Putative uncharacterized protein OS=Ixode...    34   5.0  
tr|B5RT37|B5RT37_DEBHA DEHA2B03586p OS=Debaryomyces hansenii GN=...    34   5.0  
tr|Q6BMU9|Q6BMU9_DEBHA DEHA2F02464p OS=Debaryomyces hansenii GN=...    33   8.5  

>tr|B5J4K4|B5J4K4_9RHOB Putative uncharacterized protein
           OS=Octadecabacter antarcticus 307 GN=OA307_2014 PE=4
           SV=1
          Length = 176

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -2

Query: 439 LLGGSVTRIVDLWHLVQETWPEMLTAARVDK 347
           + GG +TRI D  HLVQE  PE + AA +D+
Sbjct: 144 IAGGKITRIPDAGHLVQEDAPEAIVAAMLDR 174


>tr|Q9DW84|Q9DW84_RCMVM PR115 OS=Rat cytomegalovirus (strain
           Maastricht) GN=R115 PE=4 SV=1
          Length = 315

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
 Frame = +3

Query: 261 SSTHPPRISPHGFSPSFTLIISSTFG*RTLSTL-----------------AAVNISGHVS 389
           +ST PP +SPH +SP   ++I+ T    T  T+                 +   I+G   
Sbjct: 39  NSTSPPPLSPHEYSPRTEMVINITG--PTSETITDEPDIDAADDVVYLLSSEATINGSAI 96

Query: 390 CTKCHRSTILVTDPPSNHTVLLLSLSETKSENFAHH 497
           C +C  + I+  +  SN T +   ++E      AHH
Sbjct: 97  CPRCRENLIICQNTSSNFTTM---IAEGPIRPKAHH 129


>tr|B2RWG3|B2RWG3_MOUSE Gm912 protein OS=Mus musculus GN=Gm912 PE=2
           SV=1
          Length = 268

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +2

Query: 260 LKYPSSQNLSTWILSQ---FYPYHLQHFRLTHLVHPRRCQHLRP-CLLHQMPQVNN---- 415
           LKY SS+   T   ++   F+P+HL H    H  H    QH RP  L HQ P ++N    
Sbjct: 44  LKYVSSRRGITQNSAEQGSFHPHHLPHHHRHHCHHNHLYQHARPHHLHHQEPGLHNSQVT 103

Query: 416 PCHRP 430
           PC  P
Sbjct: 104 PCICP 108


>tr|B7QEZ5|B7QEZ5_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW012749 PE=4 SV=1
          Length = 1419

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 103 PFASEFMHLHSDALPGCEEQITRNTRIPDAAPHFLPDDPFNGNEQGLLILPSSQVPILPE 282
           P    F+H+HSD LP  E++       P   P + P      +   LL  P    P+L +
Sbjct: 742 PCEQRFLHVHSDVLPTREDRSP-----PTPPPRYTPSPVLREDRVRLLRTPVKSTPVLVD 796

Query: 283 SL 288
           SL
Sbjct: 797 SL 798


>tr|B5RT37|B5RT37_DEBHA DEHA2B03586p OS=Debaryomyces hansenii
           GN=DEHA2B03586g PE=4 SV=1
          Length = 529

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 385 SPAPNATGQQSLSQTRPAITLSFYSRSQKPKAKTLPIILPTKSAQSTLSSEEQHSH 552
           +P P  +       +  ++ L FY  S K      P+ LPT  + STL   + +SH
Sbjct: 379 TPVPQYSSNVPKQDSSTSLNLEFYMPSAKKSRPNSPVQLPTSHSSSTLLQPQSYSH 434


>tr|Q6BMU9|Q6BMU9_DEBHA DEHA2F02464p OS=Debaryomyces hansenii
           GN=DEHA2F02464g PE=4 SV=1
          Length = 708

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 392 HQMPQVNNPCHRPAQQSHCPSTLALRNQKRKLCPS-SYPRSQLSLLSHQKNSTAMK 556
           HQ+ Q N P   P    H P  LA  N +    PS   P SQ+   +H  N  ++K
Sbjct: 503 HQISQPNQPAVSPIPPVHQPPPLAQSNPQTSYLPSIPQPSSQIQSSTHTPNQASVK 558