BP911962 |
Clone id |
YMU001_000011_D02 |
Library |
YMU01 |
Length |
437 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000011_D02. |
Accession |
BP911962 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2877Contig1 |
Sequence |
GCATGCTGTGGGGATGAAGGAGATTGCAAGAAGTTCCAGTCACCTTGTTCTTGATCAGCT GACCACACGAAGTTTAGTGGCACCTATTACAGCAAGGATTGATGATGATAATTATGCTTG TTATGACAGGACAGATCTTGCGTATCAAGATGCCATCAGCAATGATTCAAACAACTCATT GCTACTTGCTAATTATGCACAGTTTCTCTTCCTCGTACGCAAGGATCATGACAGAGCGGA GGAGCTCTTTCGAAAAGCGGTAGTATGCGACCCATTCGATTGTGATGCAATAGGTCGATT TGCAAGCTTTCTATGGCTGGCCCGGCGTAATCTTGGAGCGGCTGAAAAAGCCTATCAAGC AGCCTTACGAGCAGATCCTGCCAACTCTTTCCATGCAGCTAACTATGCGCATTTCCTCTG GAACTCAGGCTTGTAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54J83 |
Definition |
sp|Q54J83|APC3_DICDI Anaphase-promoting complex subunit 3 OS=Dictyostelium discoideum |
Align length |
71 |
Score (bit) |
37.0 |
E-value |
0.036 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911962|Adiantum capillus-veneris mRNA, clone: YMU001_000011_D02. (437 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q54J83|APC3_DICDI Anaphase-promoting complex subunit 3 OS=Dic... 37 0.036 sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor sub... 32 1.5 sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing pr... 32 1.5 sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing pr... 32 1.5 sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing pr... 31 2.0 sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=... 30 4.4 sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing pr... 30 5.7 sp|Q1JQ97|BBS4_BOVIN Bardet-Biedl syndrome 4 protein homolog OS=... 30 5.7 sp|P31600|NFRA_ECOLI Bacteriophage N4 adsorption protein A OS=Es... 29 7.5 sp|Q8NE28|SGK71_HUMAN Protein kinase-like protein SgK071 OS=Homo... 29 9.8 sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloropla... 29 9.8 sp|A1VK36|HIS1_POLNA ATP phosphoribosyltransferase OS=Polaromona... 29 9.8
>sp|Q54J83|APC3_DICDI Anaphase-promoting complex subunit 3 OS=Dictyostelium discoideum GN=anapc3 PE=3 SV=1 Length = 970
Score = 37.0 bits (84), Expect = 0.036 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +2
Query: 209 FLVRKDHDRAEELFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQAALRADPA-- 382 F +++DH+ A +LFR+A+ DP D +LA L A A++ A+R DP Sbjct: 750 FSLQRDHEAAIKLFRRAIQLDP-DMTYAYTLCGHEYLANDELELALNAFRMAIRCDPRHY 808
Query: 383 NSFHAANYAHF 415 N+F+ ++ Sbjct: 809 NAFYGIGLIYY 819
>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom70 OS=Schizosaccharomyces pombe GN=tom70 PE=1 SV=1 Length = 625
Score = 31.6 bits (70), Expect = 1.5 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +2
Query: 191 NYAQFLFLVRKDHDRAEELFRKAVVCDPFDCD-AIGRFASFL---WLARRNLGAAEKAYQ 358 N A +F +KD +AE L R+A+ DP +CD AI A FL AR L EK+ Q Sbjct: 528 NKALAVFQWKKDISQAENLCRQALSADP-ECDIAIASMAQFLLQQGKAREALEYFEKSAQ 586
Query: 359 -AALRADPANSFHAA 400 A ++ N+F A Sbjct: 587 LARTESEMVNAFSYA 601
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341 OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1 Length = 938
Score = 31.6 bits (70), Expect = 1.5 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +2
Query: 236 AEELFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQAALRADPANSFHAANYA 409 AE +RKAV P D A + L L R AA +Y+AALR P ++ N A Sbjct: 875 AEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAA-SYKAALRLQPGDAITLGNLA 931
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=1 Length = 942
Score = 31.6 bits (70), Expect = 1.5 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = +2
Query: 221 KDHDRAEE---LFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQAALRADPANSF 391 K ++ EE L ++++ P DA AS L + AE YQA ++ P +S Sbjct: 619 KSQEKTEEAIMLLKESIKYGPDFADAYSSLASLL-AEQERFKEAEDIYQAGIKNCPDSSD 677
Query: 392 HAANYAHFLWNSG 430 NYA FL +SG Sbjct: 678 LHNNYAVFLVDSG 690
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens GN=TMTC2 PE=2 SV=1 Length = 836
Score = 31.2 bits (69), Expect = 2.0 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +2
Query: 143 YQDAIXXXXXXXXXXANYAQFLFLVRKDHDRAEELFRKAVVCDPFDCDAIGRFASFLWLA 322 Y +++ Y + L L + + AE+LF KA+ DP + + FL Sbjct: 666 YMESLRSKTDHIPAHLTYGKLLALTGRKSE-AEKLFLKAIELDPTKGNCYMHYGQFLLEE 724
Query: 323 RRNLGAAEKAYQAALRADPANSFHAANYAHFLWNSGL 433 R + AAE A +AA D N AH L + L Sbjct: 725 ARLIEAAEMAKKAA-ELDSTEFDVVFNAAHMLRQASL 760
>sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus GN=Bbs4 PE=2 SV=1 Length = 520
Score = 30.0 bits (66), Expect = 4.4 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = +2
Query: 206 LFLVRKDHDRAEELFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQ---AALRAD 376 + L++ D D+A E+++KAV P + + + + L L LG +KA++ AL D Sbjct: 177 IHLLQGDLDKAIEIYKKAVEFSPENTELL----TTLGLLYLQLGVYQKAFEHLGNALTYD 232
Query: 377 PAN 385 PAN Sbjct: 233 PAN 235
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis GN=tmtc2 PE=2 SV=1 Length = 836
Score = 29.6 bits (65), Expect = 5.7 Identities = 26/80 (32%), Positives = 36/80 (45%) Frame = +2
Query: 194 YAQFLFLVRKDHDRAEELFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQAALRA 373 Y + L L + ++ AE F KA+ DP + + FL R L AAE A +AA Sbjct: 683 YGKLLTLTGRKNE-AERYFLKAIQLDPNKGNCYMHYGQFLLEEGRILEAAEMAKKAA-EL 740
Query: 374 DPANSFHAANYAHFLWNSGL 433 D + N AH L + L Sbjct: 741 DSSEFDVVFNAAHMLRQASL 760
>sp|Q1JQ97|BBS4_BOVIN Bardet-Biedl syndrome 4 protein homolog OS=Bos taurus GN=BBS4 PE=2 SV=1 Length = 519
Score = 29.6 bits (65), Expect = 5.7 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +2
Query: 206 LFLVRKDHDRAEELFRKAVVCDPFDCDAIGRFASFLWLARRNLGAAEKAYQ---AALRAD 376 +FL++ D D+A E+++KAV P + + + + L L LG +KA++ L D Sbjct: 177 IFLLKGDLDKAIEIYKKAVEFSPENTELL----TTLGLLYLQLGIYQKAFEHLGNTLTYD 232
Query: 377 PAN 385 P N Sbjct: 233 PTN 235
Score = 29.3 bits (64), Expect = 7.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2
Query: 341 AEKAYQAALRADPANSFHAANYAHFLWNSG 430 A++AY+ A+R D N NYA L+N G Sbjct: 357 AKRAYEEAVRLDKCNPLVNLNYAVLLYNQG 386
>sp|P31600|NFRA_ECOLI Bacteriophage N4 adsorption protein A OS=Escherichia coli (strain K12) GN=nfrA PE=4 SV=1 Length = 990
Score = 29.3 bits (64), Expect = 7.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2
Query: 311 LWLARRNLGAAEKAYQAALRADPANSFHAANYAHFLWNSG 430 ++ R N+ AA +AAL +P NS A + LW+SG Sbjct: 621 IYRQRHNVPAAVSDLRAALELEPNNSNTQAALGYALWDSG 660
>sp|Q8NE28|SGK71_HUMAN Protein kinase-like protein SgK071 OS=Homo sapiens GN=SGK071 PE=2 SV=4 Length = 680
Score = 28.9 bits (63), Expect = 9.8 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3
Query: 300 LQAFYGWPGVILERLKKPIKQPYEQI 377 +Q F GWP V L +K+ +K P +Q+ Sbjct: 335 MQKFSGWPEVQLRAMKRLLKMPADQL 360
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U3W7 |
Definition |
tr|A9U3W7|A9U3W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
173 |
Score (bit) |
145.0 |
E-value |
1.0e-33 |
Report |
|