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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911969
Clone id YMU001_000011_D12
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCATACTGACCAATATTTCCTCACTTAGGCCTGTCTAAGAAACAGACAAGATTGGAAAAC
TTATTATTCAAGGACCCAATCAAGGTGCAAAGGTGTGTGTATGGAATGTGATCAAAACGT
AAGGTACGTACGTTGTAATTCTGTAGGGATATACGTAATTGTGACATACCGGGATTTTTT
TATAACCTGAATGTGGACCATATCCATTACACAATAAGAATCAGTGACTCTCCACACACA
CAACTCCACACCTTACAACTCGTTACGTACAAGTTTTGCGAAAACCTGAATTGTGGTCCA
TATCTACATTTCACAAACATATTAGACATGTATCCATTACACAATAAGAATCAGTGACTC
TCCACGCACCCCCACACCTTACAACATTCTCTCTTTGGAATTCTTTACGTGTATCTTTGA
AACACTCAGATAACGCTCTCTCTCAAACTCTCTATCTGCATGGTCAACACAAA
■■Homology search results ■■ -
sp_hit_id Q9JKV7
Definition sp|Q9JKV7|EXTL1_MOUSE Exostosin-like 1 OS=Mus musculus
Align length 29
Score (bit) 33.9
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911969|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_D12.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JKV7|EXTL1_MOUSE Exostosin-like 1 OS=Mus musculus GN=Extl1 ...    34   0.38 
sp|Q12967|GNDS_HUMAN Ral guanine nucleotide dissociation stimula...    33   0.84 
sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulato...    32   1.4  
sp|Q92935|EXTL1_HUMAN Exostosin-like 1 OS=Homo sapiens GN=EXTL1 ...    32   1.4  
sp|Q54NQ8|Y6335_DICDI Putative uncharacterized protein DDB_G0285...    32   1.9  
sp|Q03385|GNDS_MOUSE Ral guanine nucleotide dissociation stimula...    32   1.9  

>sp|Q9JKV7|EXTL1_MOUSE Exostosin-like 1 OS=Mus musculus GN=Extl1
           PE=2 SV=1
          Length = 669

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 16  FPHLGLSKKQTRLENLLFKDPIKVQRCVY 102
           F H+ L   Q RL+ +LFKDP+ VQR  Y
Sbjct: 635 FGHMPLVSSQVRLDPVLFKDPVSVQRKKY 663


>sp|Q12967|GNDS_HUMAN Ral guanine nucleotide dissociation stimulator
           OS=Homo sapiens GN=RALGDS PE=1 SV=2
          Length = 914

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L CGPYL   +I D   +H+
Sbjct: 673 APSTELSTSGSSHSKSCDQLRCGPYLSSGDIADALSVHS 711


>sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulator
           OS=Rattus norvegicus GN=Ralgds PE=1 SV=1
          Length = 895

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L C PYL   +I D   +H+
Sbjct: 654 APSTELSTSSSAHSKSCDQLRCSPYLSSGDITDALSVHS 692


>sp|Q92935|EXTL1_HUMAN Exostosin-like 1 OS=Homo sapiens GN=EXTL1
           PE=1 SV=2
          Length = 676

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 16  FPHLGLSKKQTRLENLLFKDPIKVQRCVY 102
           F H+ L   + RL+ +LFKDP+ VQR  Y
Sbjct: 642 FGHMPLLSSRLRLDPVLFKDPVSVQRKKY 670


>sp|Q54NQ8|Y6335_DICDI Putative uncharacterized protein DDB_G0285031
           OS=Dictyostelium discoideum GN=DDB_G0285031 PE=4 SV=1
          Length = 784

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 152 ISLQNYNVRTLRFDHIPYTHLCTLIGSLNNKFSNLVCFLDRPK 24
           I  QN N R +  + IP  H+  L+   NN   N++CF ++ K
Sbjct: 184 IKQQNKNTRIIIDNDIPLDHIKQLLSQFNNFPINIICFKNKCK 226


>sp|Q03385|GNDS_MOUSE Ral guanine nucleotide dissociation stimulator
           OS=Mus musculus GN=Ralgds PE=1 SV=1
          Length = 852

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L C PYL   +I D   +H+
Sbjct: 611 APSTELSTSSSAHSKSCDQLRCSPYLGSGDITDALSVHS 649
tr_hit_id Q3TSP4
Definition tr|Q3TSP4|Q3TSP4_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus
Align length 29
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911969|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_D12.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3TSP4|Q3TSP4_MOUSE Putative uncharacterized protein (Fragmen...    34   4.2  
tr|Q3T9C7|Q3T9C7_MOUSE Putative uncharacterized protein OS=Mus m...    34   4.2  
tr|Q0VAW4|Q0VAW4_MOUSE Exostoses (Multiple)-like 1 OS=Mus muscul...    34   4.2  
tr|Q18129|Q18129_CAEEL Patched related family protein 1 OS=Caeno...    33   7.1  
tr|A5B590|A5B590_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|A7SI54|A7SI54_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.3  
tr|Q9HAX9|Q9HAX9_HUMAN Ral guanine nucleotide dissociation stimu...    33   9.3  
tr|Q8WU11|Q8WU11_HUMAN Putative uncharacterized protein (Fragmen...    33   9.3  
tr|Q8TEK9|Q8TEK9_HUMAN FLJ00185 protein (Fragment) OS=Homo sapie...    33   9.3  
tr|Q8NF31|Q8NF31_HUMAN FLJ00371 protein (Fragment) OS=Homo sapie...    33   9.3  
tr|Q8N4Y1|Q8N4Y1_HUMAN Putative uncharacterized protein (Fragmen...    33   9.3  
tr|Q6ZSD5|Q6ZSD5_HUMAN cDNA FLJ45617 fis, clone BRTHA3026916, hi...    33   9.3  
tr|Q6PCE1|Q6PCE1_HUMAN RALGDS protein OS=Homo sapiens GN=RALGDS ...    33   9.3  
tr|Q6KH11|Q6KH11_HUMAN Ral guanine nucleotide dissociation stimu...    33   9.3  
tr|Q5T7V4|Q5T7V4_HUMAN Ral guanine nucleotide dissociation stimu...    33   9.3  
tr|Q5T7U6|Q5T7U6_HUMAN Ral guanine nucleotide dissociation stimu...    33   9.3  
tr|B7Z753|B7Z753_HUMAN cDNA FLJ53221, highly similar to Ral guan...    33   9.3  
tr|B7Z1W0|B7Z1W0_HUMAN cDNA FLJ55326, highly similar to Ral guan...    33   9.3  
tr|B3KPK6|B3KPK6_HUMAN cDNA FLJ31900 fis, clone NT2RP7004196, hi...    33   9.3  

>tr|Q3TSP4|Q3TSP4_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Extl1 PE=2 SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 16  FPHLGLSKKQTRLENLLFKDPIKVQRCVY 102
           F H+ L   Q RL+ +LFKDP+ VQR  Y
Sbjct: 602 FGHMPLVSSQVRLDPVLFKDPVSVQRKKY 630


>tr|Q3T9C7|Q3T9C7_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Extl1 PE=2 SV=1
          Length = 669

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 16  FPHLGLSKKQTRLENLLFKDPIKVQRCVY 102
           F H+ L   Q RL+ +LFKDP+ VQR  Y
Sbjct: 635 FGHMPLVSSQVRLDPVLFKDPVSVQRKKY 663


>tr|Q0VAW4|Q0VAW4_MOUSE Exostoses (Multiple)-like 1 OS=Mus musculus
           GN=Extl1 PE=2 SV=1
          Length = 669

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 16  FPHLGLSKKQTRLENLLFKDPIKVQRCVY 102
           F H+ L   Q RL+ +LFKDP+ VQR  Y
Sbjct: 635 FGHMPLVSSQVRLDPVLFKDPVSVQRKKY 663


>tr|Q18129|Q18129_CAEEL Patched related family protein 1
           OS=Caenorhabditis elegans GN=ptr-1 PE=2 SV=1
          Length = 956

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -1

Query: 269 YVTSCKVWSCVCGESLILIV*WIWSTFRL*KNPGMSQLRISLQNYNVRTLRFDHIPYTHL 90
           + T C+ W  V G   +  +  +W+     + P ++  R  L   N RT   DH   TH 
Sbjct: 684 WYTRCRDWLIVAGGRRLWQMDMVWANTTFEETPRITAFRFQLGLRNYRT-PTDH---THS 739

Query: 89  CTLIGSLNNKFS 54
           C L+ S+ +K+S
Sbjct: 740 CKLMRSIADKYS 751


>tr|A5B590|A5B590_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001710 PE=4 SV=1
          Length = 396

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHNKNQ*LSTHPHTLQHSLFGILY 408
           +PHT + TL+ +++ +C +++    +H+T++L   P       L  HP       F  LY
Sbjct: 29  TPHTHIFTLKFMSHTYCPHIHHITSIHYTHLLXPIPHMPLQPPLPPHPILPSMPAFQHLY 88

Query: 409 VYL*NTQITL 438
               + Q+ L
Sbjct: 89  STNQHLQVAL 98


>tr|A7SI54|A7SI54_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g47592 PE=4 SV=1
          Length = 87

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 208 YTIRISDSPHTQLHTLQLVTYKFCENLN--CGPYLHFTNILDMYPLHNKNQ*LSTHPHTL 381
           Y   I+ + HT +HT+    + +   +N  C  Y+H TN      +H  N    T+ HT+
Sbjct: 1   YVHTINSACHTYIHTINSTCHTYVHTINSTCHTYVHTTNSTCHTYVHTINSTCHTYIHTI 60


>tr|Q9HAX9|Q9HAX9_HUMAN Ral guanine nucleotide dissociation
           stimulator (Fragment) OS=Homo sapiens GN=RALGDS PE=2
           SV=1
          Length = 42

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L CGPYL   +I D   +H+
Sbjct: 3   APSTELSTSGSSHSKSCDQLRCGPYLSSGDIADALSVHS 41


>tr|Q8WU11|Q8WU11_HUMAN Putative uncharacterized protein (Fragment)
           OS=Homo sapiens PE=2 SV=1
          Length = 304

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L CGPYL   +I D   +H+
Sbjct: 63  APSTELSTSGSSHSKSCDQLRCGPYLSSGDIADALSVHS 101


>tr|Q8TEK9|Q8TEK9_HUMAN FLJ00185 protein (Fragment) OS=Homo sapiens
           GN=FLJ00185 PE=2 SV=1
          Length = 824

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L CGPYL   +I D   +H+
Sbjct: 661 APSTELSTSGSSHSKSCDQLRCGPYLSSGDIADALSVHS 699


>tr|Q8NF31|Q8NF31_HUMAN FLJ00371 protein (Fragment) OS=Homo sapiens
           GN=FLJ00371 PE=2 SV=1
          Length = 625

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 SPHTQLHTLQLVTYKFCENLNCGPYLHFTNILDMYPLHN 345
           +P T+L T      K C+ L CGPYL   +I D   +H+
Sbjct: 462 APSTELSTSGSSHSKSCDQLRCGPYLSSGDIADALSVHS 500