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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911972
Clone id YMU001_000011_E05
Library
Length 336
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACTTAGAGCCAAACAAGGCTGAGAACCTGCTGGAGTTGCTTGATGGAAACCAGTTCAAG
GTTGTTTACCAGCCTTTTGACTGGAGTCCTAATGTGTAGGTGGGAATGGGCTAATTGTTT
ATGCATGTTCGAGGTAATGGTTGTACAGAAGGCATTTTCTTTTGAAGCATAGCATAGCCC
AGTTGCAGAGCTTTTGACATGCTTCTATTCACATTGTTTTGGGGTTGCTGCAAAATGACA
AAGGTTGAAGAACAAGGTGGATGGGCTCAAAGGTTCTTTAGTGCTTGCATTTGCGACGCT
AAACGACACTTTCTTTATCCTACTAGTCTGCTGAAG
■■Homology search results ■■ -
sp_hit_id Q6GPA5
Definition sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
Align length 26
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911972|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E05.
         (336 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis...    30   3.8  
sp|Q3UH06|RREB1_MOUSE RAS-responsive element-binding protein 1 O...    30   3.8  

>sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
           GN=ttyh3 PE=2 SV=1
          Length = 522

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 181 SCRAFDML--LFTLFWGCCKMTKVEE 252
           SC A D+L  LF  FW CC+  K EE
Sbjct: 53  SCLALDLLFLLFYSFWFCCRHRKTEE 78


>sp|Q3UH06|RREB1_MOUSE RAS-responsive element-binding protein 1
           OS=Mus musculus GN=Rreb1 PE=1 SV=2
          Length = 1700

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = -1

Query: 297 VANASTKEPLSPSTLFFNLCHFAATPKQCE*KHVKSSATGLCYASKENAFCTTITSNMHK 118
           V  A  +  L  S    N+C + A  K    +H+++ +    Y  K   +  T+ +N  +
Sbjct: 655 VLRAHVRSHLGISPYQCNICDYIAADKAALIRHIRTHSGERPYICKICHYPFTVKANCER 714

Query: 117 QLAHSHLHIRTPVKRLVNNLELVS 46
            L   HL  +   K +  N+E VS
Sbjct: 715 HLRKKHL--KATRKDIEKNIEYVS 736
tr_hit_id Q67UI1
Definition tr|Q67UI1|Q67UI1_ORYSJ Os06g0224200 protein OS=Oryza sativa subsp. japonica
Align length 32
Score (bit) 43.9
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911972|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E05.
         (336 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q67UI1|Q67UI1_ORYSJ Os06g0224200 protein OS=Oryza sativa subs...    44   0.004
tr|B8B477|B8B477_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A3B9T7|A3B9T7_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A7NV39|A7NV39_VITVI Chromosome chr18 scaffold_1, whole genome...    40   0.058

>tr|Q67UI1|Q67UI1_ORYSJ Os06g0224200 protein OS=Oryza sativa subsp.
           japonica GN=P0638H11.29 PE=2 SV=1
          Length = 711

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   HLEPNKAENLLELLDGNQFKVVYQPFDWSPNV 96
           +LEP ++E  LELL   Q KV+YQP+DWS N+
Sbjct: 680 YLEPAESEQFLELLANTQLKVLYQPYDWSLNI 711


>tr|B8B477|B8B477_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22215 PE=4 SV=1
          Length = 711

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   HLEPNKAENLLELLDGNQFKVVYQPFDWSPNV 96
           +LEP ++E  LELL   Q KV+YQP+DWS N+
Sbjct: 680 YLEPAESEQFLELLANTQLKVLYQPYDWSLNI 711


>tr|A3B9T7|A3B9T7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019809 PE=4 SV=1
          Length = 722

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   HLEPNKAENLLELLDGNQFKVVYQPFDWSPNV 96
           +LEP ++E  LELL   Q KV+YQP+DWS N+
Sbjct: 691 YLEPAESEQFLELLANTQLKVLYQPYDWSLNI 722


>tr|A7NV39|A7NV39_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015289001
           PE=4 SV=1
          Length = 721

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 1   HLEPNKAENLLELLDGNQFKVVYQPFDWSPN 93
           +LEP  +E LLE+L   Q KV+YQP+DW  N
Sbjct: 690 YLEPPISEELLEVLATGQLKVIYQPYDWGLN 720