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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911975
Clone id YMU001_000011_E08
Library
Length 398
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGCTGGCCTAGGGAGCCAATCTCAGCAGCGCAAGGCAGATGCCAGATTTGAGACACAGC
CTGGTGATAGTTATCGTGTCGTTATTCAGAAGAAAGCACTCGCCAGGTTTCATGACATGA
TGTAGAGCTCAGTTCTTCTCCTCTATTGTGTAAATTTGGCATCTGCAAGGACATATACTC
GAGTCACTTCTTGCGGGATGCTTTGGGCTCGCTTGTTGGAATTCTTTGTAATTTTGTAGA
AAGCTTTACGAATCACACTGCTCATCAGTACTCATTTTTGGAAGGTGCAGGCTAAACTGT
ACTGCATCCTCTTTAAGAGGAGTTGGAGAACAATGGAAAAGATCAGATTCAATTTAAAAT
AAGTCCTTGATGCACTTGGAGATTGGAACATTATAAAA
■■Homology search results ■■ -
sp_hit_id Q3MIS4
Definition sp|Q3MIS4|CF224_HUMAN Uncharacterized protein C6orf224 OS=Homo sapiens
Align length 57
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911975|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E08.
         (398 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3MIS4|CF224_HUMAN Uncharacterized protein C6orf224 OS=Homo s...    31   1.7  
sp|Q80U22|RUSC2_MOUSE Iporin OS=Mus musculus GN=Rusc2 PE=1 SV=2        30   4.9  
sp|P58947|LEUC_STAAW 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|A8Z4W2|LEUC_STAAT 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q6G7P9|LEUC_STAAS 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q6GF14|LEUC_STAAR 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|P63436|LEUC_STAAN 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|P63435|LEUC_STAAM 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|A6QIQ5|LEUC_STAAE 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q5HEE2|LEUC_STAAC 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q2YUF0|LEUC_STAAB 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|A5IUK5|LEUC_STAA9 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q2FWK1|LEUC_STAA8 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q2FF65|LEUC_STAA3 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|A6U3E4|LEUC_STAA2 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|A7X4N3|LEUC_STAA1 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|P0C1B1|CBK1_EMENI Serine/threonine-protein kinase cbk1 OS=Eme...    30   4.9  
sp|Q8DIH2|TILS_THEEB tRNA(Ile)-lysidine synthase OS=Thermosynech...    29   6.4  
sp|O29513|PYRD_ARCFU Dihydroorotate dehydrogenase OS=Archaeoglob...    29   8.3  
sp|P01855|IGHE_RAT Ig epsilon chain C region OS=Rattus norvegicu...    29   8.3  
sp|Q9DUC9|CAPSD_TTVV8 Capsid protein OS=Torque teno virus (isola...    29   8.3  
sp|Q7MH68|CAPP_VIBVY Phosphoenolpyruvate carboxylase OS=Vibrio v...    29   8.3  
sp|Q8DCN2|CAPP_VIBVU Phosphoenolpyruvate carboxylase OS=Vibrio v...    29   8.3  

>sp|Q3MIS4|CF224_HUMAN Uncharacterized protein C6orf224 OS=Homo
           sapiens GN=C6orf224 PE=2 SV=2
          Length = 990

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 344 DLFHCSPTPLKEDAVQFSLHLPKMSTDEQCDS*SFLQNYKEFQQASPKHPARSDSSI 174
           +LF CS T   E A +F  H  KMS+ E+ +   FL+N + +      HP  S   I
Sbjct: 731 ELFDCSATDSLEFAAEFRGHYYKMSSQEKLN--KFLENPELYVPPLAPHPLPSADMI 785


>sp|Q80U22|RUSC2_MOUSE Iporin OS=Mus musculus GN=Rusc2 PE=1 SV=2
          Length = 1514

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 245 SFLQNYKEFQQASPKHPARSDSSICPCRC 159
           SF Q +K     SP+HP RS S    C C
Sbjct: 222 SFEQEWKISSDESPRHPGRSGSGTQHCHC 250


>sp|P58947|LEUC_STAAW 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain MW2) GN=leuC PE=3 SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|A8Z4W2|LEUC_STAAT 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain USA300 / TCH1516)
           GN=leuC PE=3 SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|Q6G7P9|LEUC_STAAS 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain MSSA476) GN=leuC PE=3
           SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|Q6GF14|LEUC_STAAR 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain MRSA252) GN=leuC PE=3
           SV=1
          Length = 455

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|P63436|LEUC_STAAN 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain N315) GN=leuC PE=3 SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|P63435|LEUC_STAAM 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
           GN=leuC PE=3 SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|A6QIQ5|LEUC_STAAE 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain Newman) GN=leuC PE=3
           SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104


>sp|Q5HEE2|LEUC_STAAC 3-isopropylmalate dehydratase large subunit
           OS=Staphylococcus aureus (strain COL) GN=leuC PE=3 SV=1
          Length = 456

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 395 YNVPISKCIKDLF*IESDLFHCSPTPLKEDAVQFSLHLPKMSTDEQ 258
           +NVP      D+F I+ ++ +   T L+++A+ F +H+  M +DEQ
Sbjct: 63  HNVPTI----DIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQ 104
tr_hit_id A9RWI0
Definition tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 40
Score (bit) 70.5
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911975|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E08.
         (398 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella paten...    70   4e-11
tr|A9S0V2|A9S0V2_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|Q9M383|Q9M383_ARATH Putative uncharacterized protein F24B22.1...    56   1e-06
tr|Q8VYR8|Q8VYR8_ARATH Putative uncharacterized protein At3g5423...    56   1e-06
tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome...    51   3e-05
tr|A5BEC7|A5BEC7_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|Q6H4V9|Q6H4V9_ORYSJ Putative RNA-binding protein 10 OS=Oryza ...    49   2e-04
tr|B8AIH3|B8AIH3_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A3A3I6|A3A3I6_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A0EXV5|A0EXV5_9FABA Putative RNA-binding protein (Fragment) O...    47   4e-04
tr|B2V3Y4|B2V3Y4_CLOBA Sensor histidine kinase OS=Clostridium bo...    36   1.1  
tr|Q4X2W1|Q4X2W1_PLACH Putative uncharacterized protein OS=Plasm...    35   1.4  
tr|Q4YB13|Q4YB13_PLABE Putative uncharacterized protein OS=Plasm...    34   4.1  
tr|Q4G4E4|Q4G4E4_EDWTA Orf19 OS=Edwardsiella tarda PE=4 SV=1           33   5.4  
tr|Q0VHF7|Q0VHF7_EDWTA Putative uncharacterized protein OS=Edwar...    33   5.4  
tr|Q55EN0|Q55EN0_DICDI C2H2-type Zn finger-containing protein OS...    33   5.4  
tr|Q1ACA6|Q1ACA6_EDWIC Leucine-rich region-containing protein OS...    33   7.0  

>tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_161416 PE=4 SV=1
          Length = 1153

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDMM 122
            AGLGS SQQ+K D+RFET PGDSYR+VIQKKALARFH+M+
Sbjct: 1114 AGLGSHSQQKKTDSRFETLPGDSYRIVIQKKALARFHEMI 1153


>tr|A9S0V2|A9S0V2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_56617 PE=4 SV=1
          Length = 888

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = +3

Query: 3   AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDMM 122
           AGLGS +QQ+  D+RFET PGDSYRVVIQKKALARFH+M+
Sbjct: 849 AGLGSHNQQKNTDSRFETLPGDSYRVVIQKKALARFHEMI 888


>tr|Q9M383|Q9M383_ARATH Putative uncharacterized protein F24B22.190
            OS=Arabidopsis thaliana GN=F24B22.190 PE=4 SV=1
          Length = 1105

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGSQ  Q+K DA FE QPGD+YR ++ KKALARF DM
Sbjct: 1065 AGLGSQ--QKKVDAEFEVQPGDTYRTLLHKKALARFRDM 1101


>tr|Q8VYR8|Q8VYR8_ARATH Putative uncharacterized protein At3g54230
            OS=Arabidopsis thaliana GN=At3g54230 PE=2 SV=1
          Length = 1007

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGSQ  Q+K DA FE QPGD+YR ++ KKALARF DM
Sbjct: 967  AGLGSQ--QKKVDAEFEVQPGDTYRTLLHKKALARFRDM 1003


>tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00015806001
            PE=4 SV=1
          Length = 989

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGS   Q+K D   E QPGDSYR +IQKKALARF +M
Sbjct: 952  AGLGSH--QKKLDPGLEVQPGDSYRTLIQKKALARFQEM 988


>tr|A5BEC7|A5BEC7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_013474 PE=4 SV=1
          Length = 1070

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGS   Q+K D   E QPGDSYR +IQKKALARF +M
Sbjct: 1033 AGLGSH--QKKLDPGLEVQPGDSYRTLIQKKALARFQEM 1069


>tr|Q6H4V9|Q6H4V9_ORYSJ Putative RNA-binding protein 10 OS=Oryza
            sativa subsp. japonica GN=OSJNBa0085K21.34-2 PE=4 SV=1
          Length = 928

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGSQ Q++ +D   E Q GDSY+ +IQKKA+ARF +M
Sbjct: 890  AGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 927


>tr|B8AIH3|B8AIH3_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_05999 PE=4 SV=1
          Length = 1061

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGSQ Q++ +D   E Q GDSY+ +IQKKA+ARF +M
Sbjct: 1023 AGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 1060


>tr|A3A3I6|A3A3I6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_005358 PE=4 SV=1
          Length = 1038

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 3    AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
            AGLGSQ Q++ +D   E Q GDSY+ +IQKKA+ARF +M
Sbjct: 1000 AGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 1037


>tr|A0EXV5|A0EXV5_9FABA Putative RNA-binding protein (Fragment)
           OS=Ammopiptanthus mongolicus PE=2 SV=1
          Length = 264

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 3   AGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 119
           AGLGSQ  Q+K D   E Q GDSY+++I KKALARF +M
Sbjct: 225 AGLGSQ--QKKLDPSLEVQAGDSYKMLIHKKALARFREM 261