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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911977
Clone id YMU001_000011_E11
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAATGAACAGCAGATAGTCTGGCAAGTCCTTTGAGCTCTAAGGGGGGAGATGAAGGAAA
CTCAGCTATTTCCGAGGTATGTAACACAGAAATGGGGGCTATGAGGTGGGCAGCACGCAA
ATTGGAGTAAAAGATGAGGATCATATACCCTAGCAAGTTTTTAGAGCTGTAATGGTGGAG
ATGCAAAGGAGGAAATTCAGCTAATCTGAGCTATGTAACACAGAAATGGGGTGGACAGCA
GCAATTGATACTTAGAACTTTAGTAGCAAAGAAGAACAGAAGAATGGAGATACTGCTGTT
TCCAAGTTACTGTGACAGAGAAATGGTGGGTTAGAGATGGCCAACAGATAGAGTCTAGCA
AGTCATCCTTAGAGCTGACATGGCAATGATGCACAGAAGAAGAAGATTCAGCTGTTCCTG
AGCCATGTAACACGGGAGTGGTGGGTAAGATATGAGATTCACCTGTTTCCAAGCTGTGTA
ATACAGAAATGGTCAATAAAAGACGTACCACAGGGTCGCCAAATTCGCGGCCGCAAATTC
TCCCAGTTGAGTACCTGCAGGTAATATCTCAAGGGCGAATTC
■■Homology search results ■■ -
sp_hit_id Q85FG7
Definition sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum capillus-veneris
Align length 59
Score (bit) 31.6
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911977|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E11.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum ...    32   3.0  
sp|P38225|FAT1_YEAST Very long-chain fatty acid transport protei...    30   6.7  

>sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum
            capillus-veneris GN=ycf1 PE=2 SV=2
          Length = 1691

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = -2

Query: 569  RYYLQVLNWENLRPRIWRPC--GTSFIDHFCITQL-----GNR*ISYLTHHSRVTWLRN 414
            RY L +  W N+ PR W+ C    S I+   IT+L      N+  SY + +++ ++LRN
Sbjct: 1258 RYNLPLTAWRNIAPRKWKVCLSELSSIETNTITELKDQVSQNKLHSYYSIYTKKSFLRN 1316


>sp|P38225|FAT1_YEAST Very long-chain fatty acid transport protein
           OS=Saccharomyces cerevisiae GN=FAT1 PE=1 SV=2
          Length = 669

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 337 SLTHHFSVTVTWKQQYLHSSVLLCY*SSKYQLLLSTPFLCY 215
           +L+H FS +  WKQ YL  +  + Y     + LL TP   Y
Sbjct: 320 ALSHKFSASTFWKQVYLTGATHIQYVGEVCRYLLHTPISKY 360
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911977|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_E11.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******