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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911984
Clone id YMU001_000011_F07
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGCAAAACATCTGCTCTTGTTACTGAAGATACTCAATGACACACTCCTCGGTGGCGGGC
ACCAGAACCATGATAGAAGAAAGTCGCAACAAAACACCTCTATAGCAATGCCTCTCTGCC
AGTTTGAACTTTCAACAAATGCAAGAAAAACACTTGCAATCTCAACTCGTAAGACTGTCT
CAAAATCGTCGACTCAAGCTCTTGGCCATGGGGGTTTACAAGCTCATGCCGACAAGGAAA
TAAATCAATCGCATGGCATGAAACTGCAACACTCGCCAACCATACTTAACAAAGGATGTA
CCACATACATCTGCATATATCATTCATAAACACCAAGCTGATGTACTCTTTTCCATCTTG
ATAAGAGATCAGCTCTCAAGTGGCTTGCATTCGTCCACAGTATGCATACATCATACTTGC
CTCAGCTCTAGGCTGCATATTACCAACCCAACCTCATCCCCAGTTAGCAGCGCTCGACAT
TTCTTTAAAGCGGAGGTCTCGACCCTCCTCACAGTTGGCAGTCCTTGAAGCTCTTGTAGG
GGTCGCCATCTATAAATGGCAGGTCT
■■Homology search results ■■ -
sp_hit_id Q2J5Z1
Definition sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3)
Align length 76
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911984|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F07.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (stra...    32   2.9  
sp|Q9PH47|ILVD_XYLFA Dihydroxy-acid dehydratase OS=Xylella fasti...    32   2.9  
sp|A1TMA7|ILVD_ACIAC Dihydroxy-acid dehydratase OS=Acidovorax av...    32   2.9  
sp|Q46YI9|ILVD2_RALEJ Dihydroxy-acid dehydratase 2 OS=Ralstonia ...    32   2.9  
sp|Q80WE4|MPPH1_MOUSE M-phase phosphoprotein 1 OS=Mus musculus G...    27   3.2  
sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRL...    30   8.3  
sp|Q4K498|ILVD_PSEF5 Dihydroxy-acid dehydratase OS=Pseudomonas f...    30   8.3  

>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain
           CcI3) GN=pth PE=3 SV=1
          Length = 197

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = +1

Query: 316 YIIHKHQADVLFSILIRDQLSSGL--HSSTVCIHHTCLSSR-------LHITNPTSSPVS 468
           Y  ++H A  +   L+ ++  S L  H S   +  T L+         L   N +  PV+
Sbjct: 23  YAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSGGPVA 82

Query: 469 SARHFFKAEVSTLLTV 516
           +AR F+K EVS L+ V
Sbjct: 83  AARSFYKVEVSRLIVV 98


>sp|Q9PH47|ILVD_XYLFA Dihydroxy-acid dehydratase OS=Xylella
           fastidiosa GN=ilvD PE=3 SV=1
          Length = 610

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = +1

Query: 178 SQNRRLKLLAMGVYKLMP-TRK*INRMA*NCNTRQPYLTKDVPHTSAYIIHK-HQADVLF 351
           S N  L LLA      +P T + I+R++ N     P L K  P+T  Y I   H+A  +F
Sbjct: 276 STNTILHLLAAAQEAEVPFTMQDIDRLSRNV----PQLCKVAPNTQKYHIEDVHRAGGIF 331

Query: 352 SILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTSSPVSSARHFFKA 492
            IL      + LH+    +H   L   +   +   +   +   F+KA
Sbjct: 332 GILAELARGNLLHTDVATVHSKTLGEAIATWDIIGTQDEAVHTFYKA 378


>sp|A1TMA7|ILVD_ACIAC Dihydroxy-acid dehydratase OS=Acidovorax
           avenae subsp. citrulli (strain AAC00-1) GN=ilvD PE=3
           SV=1
          Length = 619

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
           P L K  P+T+ Y I   H+A  + +IL     +  LH+    +H   L   L   + T 
Sbjct: 314 PQLCKVAPNTNKYHIEDVHRAGGIMAILGELDRAGRLHTDAPTVHAPTLGDALAQWDITR 373

Query: 457 SPVSSARHFFKA 492
           +   + RHF+ A
Sbjct: 374 TQDEAVRHFYMA 385


>sp|Q46YI9|ILVD2_RALEJ Dihydroxy-acid dehydratase 2 OS=Ralstonia
           eutropha (strain JMP134) GN=ilvD2 PE=3 SV=1
          Length = 619

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
           P L K  P+T+ Y I   H+A  + +IL   + +  LH+    +H   L   L+  +   
Sbjct: 314 PQLCKVAPNTNKYHIEDVHRAGGIMAILGELERAGKLHTDVPTVHAPSLGDALNQWDIVR 373

Query: 457 SPVSSARHFFKA 492
           +   + RHF+ A
Sbjct: 374 TKDEAVRHFYMA 385


>sp|Q80WE4|MPPH1_MOUSE M-phase phosphoprotein 1 OS=Mus musculus
            GN=Mphosph1 PE=1 SV=2
          Length = 1774

 Score = 26.6 bits (57), Expect(2) = 3.2
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 72   DRRKSQQNTSIAMPLCQFELSTNARK---TLAISTRKTVSKSSTQALGHGGLQAHADKEI 242
            +++ S   +++  P+ +   S   ++   ++  S++KT S  S  +     + +   +  
Sbjct: 1624 NKKNSTPRSNVKFPVSEHRNSPVKKEQKVSVGPSSKKTYSLRSQASTVSANIASKKREGT 1683

Query: 243  NQSHGMKLQHSPTILN 290
             Q  G  LQHSPTIL+
Sbjct: 1684 LQKFGDFLQHSPTILS 1699



 Score = 23.5 bits (49), Expect(2) = 3.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 398  QYAYIILASALGCILPTQPHPQLAALDISLKRRSRP 505
            Q++  IL+S    I+ T   P+L+ +++S +  S+P
Sbjct: 1692 QHSPTILSSKAKKIIETMSSPKLSTVEVSKENVSQP 1727


>sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRLR
           PE=2 SV=1
          Length = 581

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 368 ISSQVACIRPQYAYIILA-SALGCILPTQPHPQLAALDISLKRRSRPSSQLAVLEA 532
           + S V C+   +A  +   S + CILP  P P++   DI L  + +    L  LE+
Sbjct: 243 VLSAVICLIMVWAVALKGYSMMTCILPPVPGPKIKGFDIHLLEKGKSEELLRALES 298


>sp|Q4K498|ILVD_PSEF5 Dihydroxy-acid dehydratase OS=Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477) GN=ilvD PE=3
           SV=1
          Length = 613

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
           P L K  P+   Y +   H+A  +FSIL        LH+    +H   ++  +   + T 
Sbjct: 307 PQLCKVAPNIQKYHMEDVHRAGGIFSILGELARGGLLHTDLPTVHSKTMAEGIAQWDITQ 366

Query: 457 SPVSSARHFFKA 492
           +   +  HFFKA
Sbjct: 367 TSDEAVHHFFKA 378
tr_hit_id B5JW93
Definition tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma proteobacterium HTCC5015
Align length 72
Score (bit) 33.5
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911984|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F07.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma prote...    33   8.3  

>tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma
           proteobacterium HTCC5015 GN=ilvD PE=4 SV=1
          Length = 600

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
           P L K  P++  Y I   H+A  + +IL     +  LHS    +H   +   +   + T 
Sbjct: 293 PQLCKVAPNSQKYHIEDVHRAGGIMAILGELDKAGKLHSECPTVHSKTIGDAIKDWSITE 352

Query: 457 SPVSSARHFFKA 492
           SP  +A  FFKA
Sbjct: 353 SPSDAAIEFFKA 364