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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911988
Clone id YMU001_000011_F12
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAGGCAGTTACAGGAACCGCCATCCGAGAAGAGGTTGCGTGCATGGTTTTTGAATGGTT
TTAGAAGCAAAAAGCTTATGGAGCAGGAGGTACCAACTCCAACCAAGAAATTCAATGATC
TGGTATAACGGGCACTGAAGCTGGAACAACAGGCCAAGAAGGAAAAGAGCCATAAAAAGA
GAAGATCCAGTAGCAGTAGCTTTGCTACTGAGAGTTCTGATTCCAGTGAAGTGTACAGCA
GCTCTGAAACAGCTCTAATGAACGGTCCAAGGATAAGTCAAAGAAGGGATCCTGGACTAA
GAAGATTGAAGAAATGGCTAGACAGATTGCCGAGATTAGCCACACCAGACAACCAGTTCG
GAAGATGGAAACTTGGTGTTCGAAATGCAGATCCAAGGACCATATCTCCAACGAGTGCCC
ACAATGTACTTACTGTAAGGCCTTTGGTCATTTATGGAACAATTGTGGTATTAGGATTCA
TCAC
■■Homology search results ■■ -
sp_hit_id Q8N3Z6
Definition sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens
Align length 60
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911988|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F12.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein...    32   2.0  
sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN...    32   2.0  
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein...    30   5.7  
sp|Q979B7|SYM_THEVO Methionyl-tRNA synthetase OS=Thermoplasma vo...    30   5.7  
sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein...    30   7.5  
sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharom...    29   9.8  
sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS...    29   9.8  
sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b...    29   9.8  
sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B...    29   9.8  
sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28...    29   9.8  
sp|Q45KJ5|LN28A_CHICK Lin-28 homolog A OS=Gallus gallus GN=LIN28...    29   9.8  
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorh...    29   9.8  
sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe G...    29   9.8  

>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7
           OS=Homo sapiens GN=ZCCHC7 PE=1 SV=1
          Length = 542

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
 Frame = +2

Query: 329 AEISHTRQPVRKMETW--------CSKCRSKDHISNECP------QCTYCKAFGHLWNNC 466
           A+I++ R P R  + +        C  C  + H+S  CP      +C  C   GHL  +C
Sbjct: 218 AQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSC 277


>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
           GN=AIR2 PE=1 SV=1
          Length = 344

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
 Frame = +2

Query: 377 CSKCRSKDHISNECP------QCTYCKAFGHLWNNC 466
           CSKC    H  ++CP      QCT CK+  H    C
Sbjct: 101 CSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERC 136



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +2

Query: 377 CSKC-RSKDHISNECP---QCTYCKAFGHLWNNC 466
           CS C  + DH S  CP   QC+ C   GH  + C
Sbjct: 81  CSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQC 114


>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13
           OS=Homo sapiens GN=ZCCHC13 PE=2 SV=1
          Length = 166

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +2

Query: 359 RKMETWCSKCRSKDHISNECPQ--CTYCKAFGHLWNNC 466
           R+ E  C  C    HI  +C Q  C  C   GH+  NC
Sbjct: 106 RQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINC 143


>sp|Q979B7|SYM_THEVO Methionyl-tRNA synthetase OS=Thermoplasma
           volcanium GN=metG PE=3 SV=1
          Length = 543

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 HISNECPQCTYCKAFGHLWNNCG 469
           +I  ECP C Y KA G   +NCG
Sbjct: 140 YIEGECPYCGYKKARGDQCDNCG 162


>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3
           OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1
          Length = 404

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 377 CSKCRSKDHISNECPQ--CTYCKAFGHLWNNC 466
           C KC S+ H+S  C Q  C  C   GHL   C
Sbjct: 336 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYC 367


>sp|P79065|TIP1_SCHPO Tip elongation protein 1
           OS=Schizosaccharomyces pombe GN=tip1 PE=1 SV=1
          Length = 461

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 368 ETWCSKCRSKDHISNECP 421
           ETWC  C + +H   ECP
Sbjct: 435 ETWCEVCETNNHSLQECP 452


>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial
           OS=Reclinomonas americana GN=RPL32 PE=3 SV=1
          Length = 62

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 359 RKMETWCSKCRSKDHISNE--CPQCTYCKAFGHLWNNCG 469
           RK+     +   K ++SN   C  C Y K   H+ NNCG
Sbjct: 13  RKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51


>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b
           PE=2 SV=2
          Length = 247

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +2

Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466
           C  C   DH + EC   PQ   C YC++  H+  NC
Sbjct: 127 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 162


>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B
           PE=1 SV=1
          Length = 250

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +2

Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466
           C  C   DH + EC   PQ   C YC++  H+  NC
Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164


>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B
           PE=2 SV=1
          Length = 250

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +2

Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466
           C  C   DH + EC   PQ   C YC++  H+  NC
Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
tr_hit_id A9TRA3
Definition tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911988|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F12.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9RDC8|A9RDC8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.044
tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9U2C9|A9U2C9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9T6T9|A9T6T9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9T6A0|A9T6A0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9T304|A9T304_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9T1G3|A9T1G3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9SYL0|A9SYL0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9SJ26|A9SJ26_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9S643|A9S643_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9RTK2|A9RTK2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A5C6R1|A5C6R1_VITVI Putative uncharacterized protein OS=Vitis...    40   0.044
tr|A9S154|A9S154_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.057
tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9TBQ7|A9TBQ7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9T2D2|A9T2D2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9SKN2|A9SKN2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9S2D0|A9S2D0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9RSD8|A9RSD8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A9TU30|A9TU30_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.097
tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.097

>tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96115 PE=4 SV=1
          Length = 219

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H   ECP       QCT+C+   HL 
Sbjct: 152 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCKGHGHSVTECPSPSQIMGQCTFCRG-KHLT 210

Query: 458 NNC 466
            NC
Sbjct: 211 ANC 213


>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1
          Length = 192

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMETWCSKCRSKDHISNECP-------QCTYCKAFGHLWNN 463
           +EEM   +A+    +    K   WCS C+   H+  ECP       QCT+C    HL  N
Sbjct: 122 MEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG-KHLTTN 180

Query: 464 C 466
           C
Sbjct: 181 C 181


>tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64623 PE=4 SV=1
          Length = 225

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVR--KMETWCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ     ++  WCS C+  D++  ECP       QCT+C    HL 
Sbjct: 145 MEEMAVNMAKDKEKRQKPTNTRINVWCSNCKGHDYLVIECPSPSQMMGQCTFCGG-KHLT 203

Query: 458 NNC 466
            NC
Sbjct: 204 TNC 206


>tr|A9RDC8|A9RDC8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64580 PE=4 SV=1
          Length = 221

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  IA+    RQ      T  W S C+   H+  ECP       QCT+C+   HL 
Sbjct: 75  MEEMAINIAKDKEKRQKPTNTRTNVWYSNCKGHGHLVTECPSSSQMKDQCTFCRG-NHLT 133

Query: 458 NNC 466
            NC
Sbjct: 134 ANC 136


>tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79949 PE=4 SV=1
          Length = 229

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           ++EMA  +A+    RQ      T  WCS C   DH+  ECP       +CT+C    HL 
Sbjct: 126 MKEMAINMAKDKEKRQKPTNTRTNVWCSNCEGHDHLVTECPSPSQVLGKCTFCGG-KHLT 184

Query: 458 NNC 466
            NC
Sbjct: 185 ANC 187


>tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_101564 PE=4 SV=1
          Length = 288

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H+  ECP       +CT+C    HL 
Sbjct: 145 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 203

Query: 458 NNC 466
            NC
Sbjct: 204 ANC 206


>tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100791 PE=4 SV=1
          Length = 281

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H+  ECP       +CT+C    HL 
Sbjct: 126 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 184

Query: 458 NNC 466
            NC
Sbjct: 185 ANC 187


>tr|A9U2C9|A9U2C9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100678 PE=4 SV=1
          Length = 156

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H+  ECP       +CT+C    HL 
Sbjct: 1   MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 59

Query: 458 NNC 466
            NC
Sbjct: 60  ANC 62


>tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94000 PE=4 SV=1
          Length = 281

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H+  ECP       +CT+C    HL 
Sbjct: 126 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 184

Query: 458 NNC 466
            NC
Sbjct: 185 ANC 187


>tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90323 PE=4 SV=1
          Length = 821

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457
           +EEMA  +A+    RQ      T  WCS C+   H+  ECP       +CT+C    HL 
Sbjct: 345 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 403

Query: 458 NNC 466
            NC
Sbjct: 404 ANC 406