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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911993
Clone id YMU001_000011_G07
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTTGTTTTTTTTTGAGCAGCATGGCGGTGAATTCCAACGATGAATCTAAGAAGCACA
TTCAAAGATCATCACAGATATTTACAATACATTGCCTGTATTAGCCATGATTACACTGTC
AGGCACATCTAATTGAGATGGCTAATCCATTAGGTAAATTATGTGTGCTATTTCCGGTAA
GGAAGCTTCATTTTCATACGTACCTGGATCTCTCTGCTGAAGTAGTTCAAGTCGCATGCT
TCTCAGGCAGCAATCACGCAGTAGTACTTGCAACTTTCATCGGCCATTTCTCAGCTTGCA
TGCCGGAAGGACTGTTCTTAGCTGTGTTTTAAGGCTAATAAACCTTGAAAATAACTGCTA
GCCTCTTGCACTGATCTTTTAGGATACAACGTACTGTGAGTTACCTCTTTGCAAGTAATC
ACATCTACTCACGAGCTCTACCTGATTGTTGTTGCTCGGATTCATCAGCTGAGCCACTGA
TCTCGTGCTTACAAAGAGGGCATATTGCATTTATCTTCAACCACTTGTCTACACAATCCG
CATGAAAGAAGTGGGTA
■■Homology search results ■■ -
sp_hit_id Q8LDB8
Definition sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
Align length 36
Score (bit) 49.7
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911993|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_G07.
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=A...    50   1e-05
sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=A...    49   2e-05
sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus ...    45   2e-04
sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=...    45   2e-04
sp|O64763|ATL2G_ARATH RING-H2 finger protein ATL2G OS=Arabidopsi...    45   2e-04
sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=...    45   3e-04
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    45   3e-04
sp|Q6AXU4|RN181_RAT RING finger protein 181 OS=Rattus norvegicus...    44   5e-04
sp|Q9CY62|RN181_MOUSE RING finger protein 181 OS=Mus musculus GN...    44   5e-04
sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=...    44   7e-04
sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=r...    44   7e-04
sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=...    44   7e-04
sp|Q3T0W3|RN181_BOVIN RING finger protein 181 OS=Bos taurus GN=R...    44   7e-04
sp|Q9D0C1|RN115_MOUSE RING finger protein 115 OS=Mus musculus GN...    44   7e-04
sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xeno...    43   0.001
sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens GN...    43   0.001
sp|Q9LSW9|ATL5K_ARATH RING-H2 finger protein ATL5K OS=Arabidopsi...    43   0.001
sp|Q9LUL6|ATL3E_ARATH Putative RING-H2 finger protein ATL3E OS=A...    43   0.001
sp|Q9FL42|ATL5E_ARATH Putative RING-H2 finger protein ATL5E OS=A...    42   0.002
sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN...    42   0.002
sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN...    42   0.002
sp|Q9FIR0|ATL5L_ARATH Putative RING-H2 finger protein ATL5L OS=A...    42   0.002
sp|Q8W571|ATL4O_ARATH RING-H2 finger protein ATL4O OS=Arabidopsi...    42   0.002
sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J OS=Arabidopsi...    42   0.002
sp|P93823|ATL1A_ARATH RING-H2 finger protein ATL1A OS=Arabidopsi...    42   0.002
sp|Q67YI6|ATL3G_ARATH RING-H2 finger protein ATL3G OS=Arabidopsi...    42   0.003
sp|Q9P0P0|RN181_HUMAN RING finger protein 181 OS=Homo sapiens GN...    41   0.005
sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN...    41   0.005
sp|Q9LY41|ATL3J_ARATH RING-H2 finger protein ATL3J OS=Arabidopsi...    41   0.005
sp|Q9Y252|RNF6_HUMAN RING finger protein 6 OS=Homo sapiens GN=RN...    40   0.006

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170
           OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2
          Length = 381

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQ 446
           H FH  CVDKWL INA CPLCK+ I  S++  E ++
Sbjct: 345 HHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEE 380


>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760
           OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1
          Length = 408

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQ 449
           H FH  CVDKWL INA CPLCK+ I  S++   ++
Sbjct: 373 HHFHCSCVDKWLYINATCPLCKYNILKSSNLDREE 407


>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus
           GN=Rnf44 PE=2 SV=1
          Length = 350

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESE 455
           H FHA CVDKWLK N  CP+C+ + S    E+E
Sbjct: 318 HEFHAKCVDKWLKANRTCPICRADASEVPREAE 350


>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus
           GN=Rnf44 PE=2 SV=1
          Length = 407

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESE 455
           H FHA CVDKWLK N  CP+C+ + S    E+E
Sbjct: 375 HEFHAKCVDKWLKANRTCPICRADASEVPREAE 407


>sp|O64763|ATL2G_ARATH RING-H2 finger protein ATL2G OS=Arabidopsis
           thaliana GN=ATL2G PE=2 SV=1
          Length = 378

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEI----SGSADESEQQQSG 440
           H FHADCVD WL  ++ CPLC+ ++     G  D+S +  SG
Sbjct: 156 HVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSG 197


>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens
           GN=RNF38 PE=1 SV=4
          Length = 515

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESE 455
           H FHA CVDKWLK N  CP+C+ + S    +SE
Sbjct: 483 HEFHAKCVDKWLKANRTCPICRADASEVHRDSE 515


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSAD 464
           H FH  C+DKWL IN+ CPLCK  I  +A+
Sbjct: 358 HHFHCTCIDKWLHINSRCPLCKFNILKNAN 387


>sp|Q6AXU4|RN181_RAT RING finger protein 181 OS=Rattus norvegicus
           GN=Rnf181 PE=1 SV=1
          Length = 165

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQSGRAR 431
           H FH++C+  WL     CPLC+HE+    D  E+ +  +AR
Sbjct: 108 HLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKAR 148


>sp|Q9CY62|RN181_MOUSE RING finger protein 181 OS=Mus musculus
           GN=Rnf181 PE=2 SV=1
          Length = 165

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQSGRAR 431
           H FH++C+  WL     CPLC+HE+    D  E+ +  +AR
Sbjct: 108 HLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKAR 148


>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens
           GN=RNF44 PE=2 SV=1
          Length = 432

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESE 455
           H FH  CVDKWLK N  CP+C+ + S    E+E
Sbjct: 400 HEFHTKCVDKWLKANRTCPICRADASEVPREAE 432
tr_hit_id Q6K4P9
Definition tr|Q6K4P9|Q6K4P9_ORYSJ cDNA clone:J013061F22, full insert sequence OS=Oryza sativa subsp. japonica
Align length 38
Score (bit) 59.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911993|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_G07.
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K4P9|Q6K4P9_ORYSJ cDNA clone:J013061F22, full insert sequen...    60   1e-07
tr|Q0DWY2|Q0DWY2_ORYSJ Os02g0787500 protein (Fragment) OS=Oryza ...    60   1e-07
tr|A3AC39|A3AC39_ORYSJ Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A2XAD9|A2XAD9_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A7P7H0|A7P7H0_VITVI Chromosome chr9 scaffold_7, whole genome ...    59   1e-07
tr|Q6K2E0|Q6K2E0_ORYSJ Os09g0323100 protein OS=Oryza sativa subs...    59   2e-07
tr|Q0DKA7|Q0DKA7_ORYSJ Os05g0179000 protein OS=Oryza sativa subs...    59   2e-07
tr|B8BEF9|B8BEF9_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|B8AYN4|B8AYN4_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|B8A0K5|B8A0K5_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|B4FNX3|B4FNX3_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|A3BXF6|A3BXF6_ORYSJ Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|A3B0J1|A3B0J1_ORYSJ Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|Q9C965|Q9C965_ARATH Putative RING zinc finger protein; 53384-...    56   1e-06
tr|B6TV66|B6TV66_MAIZE Protein binding protein OS=Zea mays PE=2 ...    56   1e-06
tr|B4FFV8|B4FFV8_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|A7P5G9|A7P5G9_VITVI Chromosome chr4 scaffold_6, whole genome ...    56   1e-06
tr|A9SFT9|A9SFT9_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06
tr|A9SFT2|A9SFT2_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06
tr|A5BDK1|A5BDK1_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|Q8VY23|Q8VY23_ARATH Putative uncharacterized protein At4g3260...    55   3e-06
tr|O65539|O65539_ARATH Putative uncharacterized protein F4D11.20...    55   3e-06
tr|Q5VRD4|Q5VRD4_ORYSJ cDNA clone:J033120I17, full insert sequen...    54   4e-06
tr|B8ADJ9|B8ADJ9_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A7PEV6|A7PEV6_VITVI Chromosome chr11 scaffold_13, whole genom...    54   4e-06
tr|A2ZPX2|A2ZPX2_ORYSJ Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A7P7H4|A7P7H4_VITVI Chromosome chr9 scaffold_7, whole genome ...    54   7e-06
tr|A5BTK7|A5BTK7_VITVI Putative uncharacterized protein OS=Vitis...    54   7e-06
tr|A7P7H3|A7P7H3_VITVI Chromosome chr9 scaffold_7, whole genome ...    53   1e-05
tr|A5BTK8|A5BTK8_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05

>tr|Q6K4P9|Q6K4P9_ORYSJ cDNA clone:J013061F22, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0054K20.13 PE=2
           SV=1
          Length = 199

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISGSADESEQQQS 443
           TH FH +CVDKWLKINA+CPLCK EI+ S+  S+ ++S
Sbjct: 149 THCFHKECVDKWLKINALCPLCKSEIASSSGTSDTRRS 186


>tr|Q0DWY2|Q0DWY2_ORYSJ Os02g0787500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os02g0787500 PE=4 SV=1
          Length = 342

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISGSADESEQQQS 443
           TH FH +CVDKWLKINA+CPLCK EI+ S+  S+ ++S
Sbjct: 292 THCFHKECVDKWLKINALCPLCKSEIASSSGTSDTRRS 329


>tr|A3AC39|A3AC39_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008361 PE=4 SV=1
          Length = 398

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISGSADESEQQQS 443
           TH FH +CVDKWLKINA+CPLCK EI+ S+  S+ ++S
Sbjct: 348 THCFHKECVDKWLKINALCPLCKSEIASSSGTSDTRRS 385


>tr|A2XAD9|A2XAD9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09219 PE=4 SV=1
          Length = 398

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISGSADESEQQQS 443
           TH FH +CVDKWLKINA+CPLCK EI+ S+  S+ ++S
Sbjct: 348 THCFHKECVDKWLKINALCPLCKSEIASSSGTSDTRRS 385


>tr|A7P7H0|A7P7H0_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034460001
           PE=4 SV=1
          Length = 442

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQS 443
           HFFH +CVDKWLKINA+CPLCK E+ G++  S    S
Sbjct: 379 HFFHVECVDKWLKINALCPLCKFEVGGTSGASPNATS 415


>tr|Q6K2E0|Q6K2E0_ORYSJ Os09g0323100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0024J13.14 PE=2 SV=1
          Length = 414

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISG 473
           THFFH  CVDKWLKINA+CPLCK EI G
Sbjct: 357 THFFHVQCVDKWLKINAVCPLCKTEIGG 384


>tr|Q0DKA7|Q0DKA7_ORYSJ Os05g0179000 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0179000 PE=2 SV=1
          Length = 407

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQSGR 437
           HFFH DCVDKWLKINA+CPLCK EI G +  +     GR
Sbjct: 354 HFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGR 392


>tr|B8BEF9|B8BEF9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30879 PE=4 SV=1
          Length = 414

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISG 473
           THFFH  CVDKWLKINA+CPLCK EI G
Sbjct: 357 THFFHVQCVDKWLKINAVCPLCKTEIGG 384


>tr|B8AYN4|B8AYN4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18674 PE=4 SV=1
          Length = 407

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -2

Query: 553 HFFHADCVDKWLKINAICPLCKHEISGSADESEQQQSGR 437
           HFFH DCVDKWLKINA+CPLCK EI G +  +     GR
Sbjct: 354 HFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGR 392


>tr|B8A0K5|B8A0K5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 414

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -2

Query: 556 THFFHADCVDKWLKINAICPLCKHEISG 473
           THFFH  CVDKWLKINA+CPLCK EI G
Sbjct: 357 THFFHVQCVDKWLKINAVCPLCKTEIGG 384