BP912005
Clone id YMU001_000011_H09
Library
Length 295
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AAATTCCCTTCTTTGGCTCAGCACTGTCTTAGTAATGAACTTCCTTCTGAAGAGGAGTAT
GGCAAACCAAGGACCAGGTCTAGCTTAGGGTCTGAAACAAATCAGGTGAACTTGAAACCA
CAAGTGGTCCATTGTAGATATATGGGCCTGAGTTACGGAGAACCAATGTTGGTTCATGAG
GAACAGCAGGGAGGTGTTGGTAAAGCAGTCAACAGCTTGAGAGGTGCCATTGCATGCCAA
GCTAGAAAGAACAGTAAAAAAGTTGCACACAATCACTGCAATTCCGCGTTCTTAC
■■Homology search results ■■ -
sp_hit_id Q8WXI7
Definition sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens
Align length 47
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912005|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_H09.
(295 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2 30 3.8
sp|A6PWY4|WDR76_MOUSE WD repeat-containing protein 76 OS=Mus mus... 29 6.5
sp|Q8N7S6|CC071_HUMAN Uncharacterized protein C3orf71 OS=Homo sa... 29 6.5

>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
Length = 22152

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1

Query: 145 PYIYNGPLVVSSSPDLFQTLS*TWSLVCHTPLQKEVHY*DSAEPKKG 5
P Y+G +SSSP+L + W++ T ++HY AE G
Sbjct: 1361 PAAYSGSPKISSSPNLTSPATKAWTITDTTEHSTQLHYTKLAEKSSG 1407


>sp|A6PWY4|WDR76_MOUSE WD repeat-containing protein 76 OS=Mus
musculus GN=Wdr76 PE=2 SV=1
Length = 622

Score = 29.3 bits (64), Expect = 6.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -1

Query: 193 LPAVPHEPTLVLRNSGPYIYNGPLVV-----SSSPDLFQTLS*TWSLVCHTPLQK 44
LPA P +PTLV P + GPL + S +L + TW+ + T +K
Sbjct: 228 LPASPTQPTLVEEEENPLLPPGPLEMIPENQDDSSELLKASLKTWAEMSQTSNEK 282


>sp|Q8N7S6|CC071_HUMAN Uncharacterized protein C3orf71 OS=Homo
sapiens GN=C3orf71 PE=2 SV=1
Length = 290

Score = 29.3 bits (64), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1

Query: 130 HCRYMGLSYGEPMLVHEEQQGGVGKAVNSLRGA 228
HC Y G+ +GE +L EQ V + ++ RGA
Sbjct: 183 HCLYSGIGHGEDILASVEQITIVSRPLSGQRGA 215


tr_hit_id Q2GCS6
Definition tr|Q2GCS6|Q2GCS6_NEOSM Riboflavin synthase, alpha subunit OS=Neorickettsia sennetsu (strain Miyayama)
Align length 35
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912005|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_H09.
(295 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2GCS6|Q2GCS6_NEOSM Riboflavin synthase, alpha subunit OS=Neo... 35 1.9
tr|Q9ZLH9|Q9ZLH9_HELPJ Putative Outer membrane protein OS=Helico... 34 3.2

>tr|Q2GCS6|Q2GCS6_NEOSM Riboflavin synthase, alpha subunit
OS=Neorickettsia sennetsu (strain Miyayama) GN=ribE-2
PE=4 SV=1
Length = 200

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2

Query: 246 SSLACNGTSQAVDCFTNTSLLFLMNQHWFSVTQAH 142
SS+ACNG V TNT L F ++Q FS T H
Sbjct: 39 SSIACNGVCLTVTSITNTELEFYVSQETFSRTNFH 73


>tr|Q9ZLH9|Q9ZLH9_HELPJ Putative Outer membrane protein
OS=Helicobacter pylori J99 GN=jhp_0600 PE=4 SV=1
Length = 906

Score = 34.3 bits (77), Expect = 3.2
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1

Query: 34 NELPSEEEYGKPRTRSSLGSETNQVNLKPQVVHCR---YMGLSYGEPMLVHEEQQGGVGK 204
N+L S +E K ++ +ET+Q N P+ + + Y+GLSY ML +E + VG
Sbjct: 29 NDLASPKETPKEAQKNEAQNETSQSNQTPKEMKVKSISYVGLSYMSDMLANEIAKIRVGD 88

Query: 205 AVNS 216
V+S
Sbjct: 89 MVDS 92