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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912009
Clone id YMU001_000012_A03
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACTCATGTCGCGGCCGCGAATCTTCCAGTTGCCTTTCATGGGCTCTACCTTTCCTTCGT
TGCTCAGTACGTACGGGGTGATGGCGATGCGTCAGACCACTCCCAGCCTCTTGGCTAATA
GCAATTGCAGATAACTTCCGTAGTCGGCGTGTTGCATCAATTCTACTCCATTCAATTGCA
ACTCGTCGCCAACCCACTCGGTTTCTCCCATGGTAGAGAGTTTCTTCAGGATAAGTTGTA
CGGGGAGAGGAGGAAGATCCTCCACTCGCTTTCCAAAACAGCGAGAGTAGTAGCTGAACC
ACTCTTCTCTAGGACATGGGAATCTTCTTACCACTTCTTCTTCTGAATTCTTGAAGTGGA
TTGGTAGCACTTGCATGCATCGTGAAAATCAGTAGGCGACCTTCCGCCGCTTAGCTTTGG
ATGACTTCTTCTTTGGCAAAGTGGGTACAACCCGGCTTTCTGAGCTTGAAGTACTTGCTT
GGCCAGATGCTTCTCCCTTCGGGGTCATGTGTTTCCAGACTGGCTTATCTTCTCCTTGCC
TTTGGCTCGGGTAGCCCCTCT
■■Homology search results ■■ -
sp_hit_id Q43467
Definition sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max
Align length 46
Score (bit) 34.3
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912009|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_A03.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly...    34   0.38 
sp|A5CR08|CLPX_CLAM3 ATP-dependent Clp protease ATP-binding subu...    31   4.2  

>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic
           OS=Glycine max GN=TUFA PE=3 SV=1
          Length = 479

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 113 SACCINSTPFNCNSSPTHSVSPMVESFFRISCTGRGGRSSTRFPKQ 250
           S+  +NSTPF  +++ TH ++P+  SF   +   R   SST  P++
Sbjct: 20  SSSSLNSTPFRSSTTNTHKLTPLSSSFLHPTTVLRRTPSSTTTPRR 65


>sp|A5CR08|CLPX_CLAM3 ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Clavibacter michiganensis subsp. michiganensis
           (strain NCPPB 382) GN=clpX PE=3 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
 Frame = -3

Query: 348 CMQVLPIHFKNSEEEVVRRFPCPR-EEWFSYYSRCF-----GKRVEDLPPLPVQLILKKL 187
           C +++      + EE    F  P+ +E F +           KR   +        ++ +
Sbjct: 42  CNEIIEERLAEASEETTGEFELPKPKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAV 101

Query: 186 STMGETEWVGDELQLNGVELMQHADYG---SYLQLLLAKRLGV 67
           ST+G  E VGDE+++    ++     G   +YL   LAKRL V
Sbjct: 102 STIGPAETVGDEIEIAKSNILLIGPTGCGKTYLAQTLAKRLNV 144
tr_hit_id A6GV61
Definition tr|A6GV61|A6GV61_CHRMO DNA-directed RNA polymerase (Fragment) OS=Chrysanthemum morifolium
Align length 50
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912009|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_A03.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6GV61|A6GV61_CHRMO DNA-directed RNA polymerase (Fragment) OS...    36   1.4  
tr|O04539|O04539_ARATH F20P5.21 protein OS=Arabidopsis thaliana ...    34   4.0  
tr|Q7UTK6|Q7UTK6_RHOBA Putative uncharacterized protein OS=Rhodo...    34   5.3  
tr|B2IEC8|B2IEC8_BEII9 Putative uncharacterized protein OS=Beije...    34   5.3  
tr|Q4WVF3|Q4WVF3_ASPFU Guanine nucleotide exchange factor (Gea2)...    33   6.9  
tr|Q0B3B7|Q0B3B7_BURCM Isochorismatase hydrolase OS=Burkholderia...    33   9.0  
tr|B2UP79|B2UP79_AKKM8 Oligopeptidase A OS=Akkermansia muciniphi...    33   9.0  
tr|B1YNH6|B1YNH6_BURA4 Isochorismatase hydrolase OS=Burkholderia...    33   9.0  
tr|Q3ETW4|Q3ETW4_BACTI Peptide synthetase OS=Bacillus thuringien...    33   9.0  
tr|B7IX57|B7IX57_BACCE Bacitracin synthetase 1 OS=Bacillus cereu...    33   9.0  

>tr|A6GV61|A6GV61_CHRMO DNA-directed RNA polymerase (Fragment)
           OS=Chrysanthemum morifolium GN=NEP PE=3 SV=1
          Length = 383

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -3

Query: 264 SYYSRCFGKR-----VEDLPPLPVQLILKKLSTMGETEWVGDELQLNGVE 130
           SY  R  G R     VED PP  +Q I + L T+G T+W  ++  LN VE
Sbjct: 11  SYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60


>tr|O04539|O04539_ARATH F20P5.21 protein OS=Arabidopsis thaliana
            GN=F20P5.21 PE=4 SV=1
          Length = 1383

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 3/154 (1%)
 Frame = -1

Query: 518  RAKGKEKISQSGNT*PRREKHLAKQVLQAQKAGLYPLCQRRSHPKLSGGRSPTDFHDACK 339
            R+ G  K+++S     R+   L K V  ++ +     C    + K+    +  D     K
Sbjct: 791  RSNGPRKVNESNQV--RQASELDKDVTSSKTSDALLSCDNTQNDKMPKNLTTPDERAETK 848

Query: 338  CYQSTSRIQKKKW*E-DSHVLEKSGSATTLAVLESEWRIFLLSPYNLS*RNSLPWEKPSG 162
               S  R         D  + +++G  ++L+V + EW  FLL    LS  N  P      
Sbjct: 849  QAVSIERAHNSNALPLDGLLPQRNGKISSLSVADEEWYPFLLYSPGLSNSNPKP-----A 903

Query: 161  LATSCN*ME*N*CNTPTTEVICNCY*PRGW--EW 66
            L +    ++ N  N P  E+  N   P G   EW
Sbjct: 904  LTSGTEELKPNYVNGPRVEIGDNPVIPNGTVAEW 937


>tr|Q7UTK6|Q7UTK6_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB3828 PE=4 SV=1
          Length = 800

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
 Frame = -3

Query: 297 RRFPCPRE---------EWFSYYSRCFGKRVEDLPPLPVQLILKKLST 181
           RRFP PR          +WF+  S+CF   V D+ P+ V L L  L T
Sbjct: 63  RRFPAPRNPLLRMNLFSDWFARQSKCFTPLVRDVLPILVCLALSPLFT 110


>tr|B2IEC8|B2IEC8_BEII9 Putative uncharacterized protein
           OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
           DSM 1715 / NCIB 8712) GN=Bind_1902 PE=4 SV=1
          Length = 318

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 294 RFPCPREEWFSYYSRCFGKRVEDLPPLPVQLILKKLST 181
           R+P    EW ++       R EDLPP P++L+LK L T
Sbjct: 53  RYPHWTREWLAFLKTF--ARAEDLPPAPLELVLKPLGT 88


>tr|Q4WVF3|Q4WVF3_ASPFU Guanine nucleotide exchange factor (Gea2),
            putative OS=Aspergillus fumigatus GN=AFUA_5G11900 PE=4
            SV=1
          Length = 1617

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +2

Query: 14   STFPSLLSTYGVMAMRQTTPSLLANSNCR*LP*SACCINSTPFNCNSSPTHSVSPMVES 190
            S F S LS+Y      + +   L N+ C     +AC IN   FN  S P  S++ +VES
Sbjct: 1015 SAFTSYLSSYAADDPPEPSDEELDNTLCTVDCVAACAINDVLFNIKSLPLSSITRVVES 1073


>tr|Q0B3B7|Q0B3B7_BURCM Isochorismatase hydrolase OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1270 PE=4
           SV=1
          Length = 228

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -2

Query: 238 ASGGSSSSPRTTYPEETLYHGRNRVGWRRVAIEWSRIDATRRLRKLSAIAISQE----AG 71
           ASGG+S +      +  +  G   V W++V +EW R D  RR    + +AI++E     G
Sbjct: 140 ASGGTSQAAHDIAMQRMVQAGVVPVTWQQVLLEWQR-DWARRDSYDAVMAIAKEHSGAYG 198

Query: 70  SGLTHRHHPVRTEQRRKGRAHE 5
            G+ + +  V    +R    HE
Sbjct: 199 MGVDYAYTMVHKAPQRTATPHE 220


>tr|B2UP79|B2UP79_AKKM8 Oligopeptidase A OS=Akkermansia muciniphila
           (strain ATCC BAA-835) GN=Amuc_2040 PE=3 SV=1
          Length = 726

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 327 HFKNSEEEVVRRFPCPR--EEWFSYYSRCFGKRVEDLP 220
           HF+  +EE+ R FP PR  +  FS   R +G RV+++P
Sbjct: 374 HFRLDQEELRRHFPLPRVLDGLFSLAERLYGIRVKEVP 411


>tr|B1YNH6|B1YNH6_BURA4 Isochorismatase hydrolase OS=Burkholderia
           ambifaria (strain MC40-6) GN=BamMC406_1304 PE=4 SV=1
          Length = 228

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -2

Query: 238 ASGGSSSSPRTTYPEETLYHGRNRVGWRRVAIEWSRIDATRRLRKLSAIAISQE----AG 71
           ASGG+S +      +  +  G   V W++V +EW R D  RR    + +AI++E     G
Sbjct: 140 ASGGTSQAAHDIAMQRMVQAGVVPVTWQQVLLEWQR-DWARRDSYDAVMAIAKEHSGAYG 198

Query: 70  SGLTHRHHPVRTEQRRKGRAHE 5
            G+ + +  V    +R    HE
Sbjct: 199 MGVDYAYTMVHKAPQRTATPHE 220


>tr|Q3ETW4|Q3ETW4_BACTI Peptide synthetase OS=Bacillus thuringiensis
           serovar israelensis ATCC 35646 GN=RBTH_03679 PE=4 SV=1
          Length = 559

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 276 EEWFSYYSRCFGKRVEDLPPLPVQLILKKLSTMGETEWVGDEL 148
           +EW ++Y    G++  +L PLPVQ          + EW+ DEL
Sbjct: 327 QEWMAFYENAIGEKQAELEPLPVQY---ADFAQWQREWLKDEL 366


>tr|B7IX57|B7IX57_BACCE Bacitracin synthetase 1 OS=Bacillus cereus
            G9842 GN=BCG9842_B2873 PE=4 SV=1
          Length = 4960

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 276  EEWFSYYSRCFGKRVEDLPPLPVQLILKKLSTMGETEWVGDEL 148
            +EW ++Y    G++  +L PLPVQ          + EW+ DEL
Sbjct: 2284 QEWMAFYENAIGEKQAELEPLPVQY---ADFAQWQREWLKDEL 2323