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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912010
Clone id YMU001_000012_A04
Library
Length 344
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCTTACTGACTCTAGCTGCCTGTCATGCAAGAATAGCAGTAATCAACATGGCTAGACAT
GCTGACAGCTCTACAGATCACTGGGATGGGGTACATGAAGAAGAGGACACATGCAACCAC
AACTTTACATGAGGGTGCATCCTTCCATAAGGTCCAACATTACAAAGAGTGCTGACCCCA
AGAAGTCATGCTTGAGACACCATACATTCCTCCAATATAAAACCTCTTCTTTGTCTGAAA
ACTCTGATTGAATTTCAAAAGCTACTCTGAGTCCGACTCTGCACTGTCCATAGCCTTGAG
ACCTCGAGGTTTCTTCTATGTGCTTTTCTTCTCTCTCACATCGT
■■Homology search results ■■ -
sp_hit_id A1A5Q6
Definition sp|A1A5Q6|SMK_RAT Sperm motility kinase OS=Rattus norvegicus
Align length 104
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912010|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_A04.
         (330 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1A5Q6|SMK_RAT Sperm motility kinase OS=Rattus norvegicus GN=...    32   1.3  
sp|P70483|STRN_RAT Striatin OS=Rattus norvegicus GN=Strn PE=1 SV=1     29   6.4  
sp|O55106|STRN_MOUSE Striatin OS=Mus musculus GN=Strn PE=1 SV=1        29   6.4  
sp|O43815|STRN_HUMAN Striatin OS=Homo sapiens GN=STRN PE=1 SV=4        29   6.4  

>sp|A1A5Q6|SMK_RAT Sperm motility kinase OS=Rattus norvegicus
           GN=Smok PE=2 SV=1
          Length = 654

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = +3

Query: 3   LTDSSCLSCKNSSNQHG*TC*QLYRSLG-----WGT*RRGHMQPQLYMRVHPSIRSNITK 167
           L + +C   K+    H   C Q  +S G       T RRG   P L     PS   ++ K
Sbjct: 327 LREKACSEDKSIKTPHPTQCAQTLKSTGSTTEKQTTLRRGSSLPTLTTFYLPSKLESLNK 386

Query: 168 SADPKKSCLRH----HTFLQYKTSSLSENSD*ISKATLSPTLHC 287
               K++ +RH    +     K+ SL++    I   T+SPTL+C
Sbjct: 387 E---KRTTMRHTMPPNLNCFNKSESLNKGRRTIVSHTISPTLNC 427


>sp|P70483|STRN_RAT Striatin OS=Rattus norvegicus GN=Strn PE=1 SV=1
          Length = 780

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 189 MTSWGQHSL*CWTLWKDAPSCKV----VVACVLFFMYPIPVICRAVSMSSHVDYCYS 31
           +T+   H+L  W L K AP+ K     V     F  +  PV+C  V MSS+ + CYS
Sbjct: 479 ITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLC--VVMSSNGEQCYS 533


>sp|O55106|STRN_MOUSE Striatin OS=Mus musculus GN=Strn PE=1 SV=1
          Length = 780

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 189 MTSWGQHSL*CWTLWKDAPSCKV----VVACVLFFMYPIPVICRAVSMSSHVDYCYS 31
           +T+   H+L  W L K AP+ K     V     F  +  PV+C  V MSS+ + CYS
Sbjct: 479 ITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLC--VVMSSNGEQCYS 533


>sp|O43815|STRN_HUMAN Striatin OS=Homo sapiens GN=STRN PE=1 SV=4
          Length = 780

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 189 MTSWGQHSL*CWTLWKDAPSCKV----VVACVLFFMYPIPVICRAVSMSSHVDYCYS 31
           +T+   H+L  W L K AP+ K     V     F  +  PV+C  V MSS+ + CYS
Sbjct: 479 ITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLC--VVMSSNGEQCYS 533
tr_hit_id A9NW57
Definition tr|A9NW57|A9NW57_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 22
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912010|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_A04.
         (330 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NW57|A9NW57_PICSI Putative uncharacterized protein OS=Picea...    36   1.1  
tr|A9STA6|A9STA6_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|Q6NKU3|Q6NKU3_ARATH At1g55340 OS=Arabidopsis thaliana GN=At1g...    34   3.2  
tr|A9PBL5|A9PBL5_POPTR Putative uncharacterized protein OS=Popul...    34   3.2  
tr|A7PW45|A7PW45_VITVI Chromosome chr8 scaffold_34, whole genome...    34   3.2  
tr|A5BD63|A5BD63_VITVI Putative uncharacterized protein (Chromos...    34   3.2  
tr|A9RFS5|A9RFS5_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|A3A5Q7|A3A5Q7_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|Q4RFJ0|Q4RFJ0_TETNG Chromosome 8 SCAF15119, whole genome shot...    33   7.2  
tr|A5BVL2|A5BVL2_VITVI Putative uncharacterized protein OS=Vitis...    33   7.2  
tr|A3KQC8|A3KQC8_DANRE Novel protein similar to vertebrate galan...    33   9.4  

>tr|A9NW57|A9NW57_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 347

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK T KKPRGLKAM+S++SDS+
Sbjct: 326 KKCTKKKPRGLKAMESSDSDSD 347


>tr|A9STA6|A9STA6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188233 PE=4 SV=1
          Length = 88

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KKS  K+PRGLKAM SAESDS+
Sbjct: 67  KKSIKKRPRGLKAMGSAESDSD 88


>tr|Q6NKU3|Q6NKU3_ARATH At1g55340 OS=Arabidopsis thaliana
           GN=At1g55340 PE=2 SV=1
          Length = 205

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK++ K+PRGLKAM S ESDSE
Sbjct: 184 KKTSKKRPRGLKAMGSMESDSE 205


>tr|A9PBL5|A9PBL5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 204

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK++ K+PRGLKAM S ESDSE
Sbjct: 183 KKTSKKRPRGLKAMGSMESDSE 204


>tr|A7PW45|A7PW45_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025469001
           PE=4 SV=1
          Length = 214

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK++ K+PRGLKAM S ESDSE
Sbjct: 193 KKTSKKRPRGLKAMGSMESDSE 214


>tr|A5BD63|A5BD63_VITVI Putative uncharacterized protein (Chromosome
           chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00024817001 PE=4 SV=1
          Length = 212

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK++ K+PRGLKAM S ESDSE
Sbjct: 191 KKASKKRPRGLKAMGSMESDSE 212


>tr|A9RFS5|A9RFS5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65548 PE=4 SV=1
          Length = 380

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK   KKPRGLKAM SA+SDS+
Sbjct: 359 KKPIKKKPRGLKAMGSADSDSD 380


>tr|A3A5Q7|A3A5Q7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006129 PE=4 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 216 IGGMYGVSSMTSWGQHSL*CWTLWKD--APSCKVVVACVLFFMYPIPVICRAVSMS-SHV 46
           + G +  S++ + G+HS  C TLW      +C  +  C +FF Y +  IC  + +S S V
Sbjct: 20  VTGNHFKSTLATHGRHSWGCATLWSPDACYACAYINICAIFFFY-VHCICNKLGVSVSEV 78

Query: 45  DYCY 34
           +  Y
Sbjct: 79  EALY 82


>tr|Q4RFJ0|Q4RFJ0_TETNG Chromosome 8 SCAF15119, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00035299001 PE=3 SV=1
          Length = 397

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 177 GQHSL*CWTLWKDAPSCKVVVACVLFFMYPIPVICRAVSMSSHVDYCYS 31
           G +   CW +W D    KV V C   F Y +P++         + +CY+
Sbjct: 181 GDNHTFCWEVWPDPTQKKVYVVCTFVFGYVLPLLL--------ITFCYA 221


>tr|A5BVL2|A5BVL2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040194 PE=4 SV=1
          Length = 481

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 330 KKST*KKPRGLKAMDSAESDSE 265
           KK + KKPRGLKAM + ESDSE
Sbjct: 460 KKISKKKPRGLKAMGNMESDSE 481