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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912024
Clone id YMU001_000012_B07
Library
Length 409
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACTATACAAGTATGCAATCCATGCTTGAGTAGCGAACAACTTTTGCATTGGAGTCCTTG
GGGCTGGACCATAGTAAATTAAGAAAACAGAAGCTCCATGTTGTGCACTTCACGCCAGGC
TCTGGGCAAAGGCAAGCTGACAACAGCATTGTTGGTGCTACTTAATGGATATAAATAGCA
TGTGTGCAGTACATTAAACTATGAGCCTTTGTTTATGTGCCTTGTGATTAAGCTAATTAT
AGTGAAGCATCCACGGAGCCGGAGCTTGAGCGACTGCGGCAGGGAACGAGAACGATACTC
ATGACATGTATGGGCAGCAATATCAAGTCAAAACTGTATGCAAATGCTGGGGTTTAAGCT
CAACGTGGTAATGAAGCATAGACACAGAATGTAGAGAAAAGGTGGAAAT
■■Homology search results ■■ -
sp_hit_id Q9KV27
Definition sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae
Align length 35
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912024|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B07.
         (409 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae GN=...    30   3.8  
sp|A5F3M9|NUDC_VIBC3 NADH pyrophosphatase OS=Vibrio cholerae ser...    30   3.8  
sp|P18161|KYK2_DICDI Dual specificity protein kinase dpyk2 OS=Di...    29   8.5  

>sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae
           GN=nudC PE=3 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = +2

Query: 179 HVCSTLNYEPLFMCLVI------KLIIVKHPRSRS 265
           H C TL+Y  +F C+++      ++++ +HPR R+
Sbjct: 129 HDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRN 163


>sp|A5F3M9|NUDC_VIBC3 NADH pyrophosphatase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=nudC PE=3 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = +2

Query: 179 HVCSTLNYEPLFMCLVI------KLIIVKHPRSRS 265
           H C TL+Y  +F C+++      ++++ +HPR R+
Sbjct: 129 HDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRN 163


>sp|P18161|KYK2_DICDI Dual specificity protein kinase dpyk2
            OS=Dictyostelium discoideum GN=splB PE=2 SV=2
          Length = 1155

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 276  QSLKLRLRGCFTIISLITRHINKGS*FNVLHTCYLYPLSSTNNAVVSLPL 127
            Q++ + +  C+    +IT ++  GS +N+LH     P SST     S PL
Sbjct: 908  QNIVMFIGACYKPACIITEYMAGGSLYNILHN----PNSSTPKVKYSFPL 953
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912024|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B07.
         (409 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******