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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912035
Clone id YMU001_000012_C08
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCACATGAGGATGGCTAACCATACTAAGGCCAGGTGTCTGGGTGTG
GCTCAGGATGTGACGGTCAAAGTGATGGGCCTAGAGTGCCTGACAAATTTTGTCGTGATG
AACGCAGGGGATAATGTTTATCCGATCATTTTGGGTAGGCCATGAATTTCGGAAATAGGT
GCTAAGCAGAATTGGGAGAGCAAAGTGTTCACCTTTCCTGACAAAGAAAAGGGAAGACAA
ATTGTGCTTGATTTGAAGACCAATGAGAGCAGTTCTCGTCCTATGGCAGTTCAAGATGAG
GGCGACACGACGAGCTACGAGTACGAGACTGAGACAGGCTATGATGAAGGCTATACCAGC
AGCGAGGAAGAGGAGAGCGAAGATGACATGCTGAAGATAGATGCAGACTTATATGGGGTG
ACCATAGACGAGTCCCTGGCTAAAGAAGAAGATATGCAGGCTCAAGATTATAGTTAAGCA
TAGAGGAGTTTTCAAGCATGTTGAGTGGAGAT
■■Homology search results ■■ -
sp_hit_id Q3ZN05
Definition sp|Q3ZN05|CAPSD_HASV4 Capsid polyprotein OS=Human astrovirus-4
Align length 34
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912035|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_C08.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZN05|CAPSD_HASV4 Capsid polyprotein OS=Human astrovirus-4 G...    32   2.1  
sp|Q6LWU0|SYD_METMP Aspartyl-tRNA synthetase OS=Methanococcus ma...    30   6.0  
sp|A4G0V5|SYD_METM5 Aspartyl-tRNA synthetase OS=Methanococcus ma...    30   6.0  
sp|Q9Z126|PLF4_MOUSE Platelet factor 4 OS=Mus musculus GN=Pf4 PE...    30   7.9  

>sp|Q3ZN05|CAPSD_HASV4 Capsid polyprotein OS=Human astrovirus-4
           GN=ORF2 PE=3 SV=1
          Length = 771

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 233 KHNLSSLFFVRKGEHFALPILLSTYFRNSWPTQN 132
           KH +SS+F ++  E+F++   +S +FR S   QN
Sbjct: 532 KHQVSSIFLIKPTENFSVTNYMSYFFRESQSDQN 565


>sp|Q6LWU0|SYD_METMP Aspartyl-tRNA synthetase OS=Methanococcus
           maripaludis GN=aspS PE=3 SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 161 YFRNSWPTQNDRINIIPCVHHDKICQAL*AHHFDRHILSHTQ 36
           YF   WPTQ      +P  H +K+C+A    + +  I S  Q
Sbjct: 326 YFITEWPTQTRPFYTLPHKHDNKVCKAFDLMYKELEISSGAQ 367


>sp|A4G0V5|SYD_METM5 Aspartyl-tRNA synthetase OS=Methanococcus
           maripaludis (strain C5 / ATCC BAA-1333) GN=aspS PE=3
           SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 161 YFRNSWPTQNDRINIIPCVHHDKICQAL*AHHFDRHILSHTQ 36
           YF   WPTQ      +P  H +K+C+A    + +  I S  Q
Sbjct: 326 YFITEWPTQTRPFYTLPHKHDNKVCKAFDLMYKELEISSGAQ 367


>sp|Q9Z126|PLF4_MOUSE Platelet factor 4 OS=Mus musculus GN=Pf4 PE=2
           SV=1
          Length = 105

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -3

Query: 278 LNCHRTRTALIGLQIKHNLSSLFFVRKGEHFALPILLST 162
           L+C   +T   G+ +KH ++SL  ++ G H A+P L++T
Sbjct: 42  LSCVCVKTISSGIHLKH-ITSLEVIKAGRHCAVPQLIAT 79
tr_hit_id Q9SKR9
Definition tr|Q9SKR9|Q9SKR9_ARATH Putative Athila retroelement ORF1 protein OS=Arabidopsis thaliana
Align length 54
Score (bit) 41.6
E-value 0.021
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912035|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_C08.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SKR9|Q9SKR9_ARATH Putative Athila retroelement ORF1 protein...    42   0.021
tr|Q6F2G0|Q6F2G0_ORYSJ Putative uncharacterized protein OSJNBa00...    39   0.13 
tr|O82611|O82611_ARATH Putative athila-like protein OS=Arabidops...    38   0.30 
tr|Q9LKR9|Q9LKR9_ARATH Putative uncharacterized protein T15F17.a...    37   0.39 
tr|Q9C8Q7|Q9C8Q7_ARATH Athila ORF 1, putative; 43045-40843 OS=Ar...    37   0.39 
tr|Q9ZQ08|Q9ZQ08_ARATH Putative Athila retroelement ORF1 protein...    37   0.51 
tr|Q7FZN4|Q7FZN4_ARATH AT4g08050 protein OS=Arabidopsis thaliana...    37   0.51 
tr|Q9LKS4|Q9LKS4_ARATH Putative uncharacterized protein T15F17.d...    37   0.66 
tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana G...    37   0.66 
tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q94HR2|Q94HR2_ORYSA Putative retroelement OS=Oryza sativa GN=...    35   1.5  
tr|Q94H30|Q94H30_ORYSA Putative uncharacterized protein OSJNBa00...    35   1.5  
tr|Q7FZS3|Q7FZS3_ARATH F28D6.7 protein (AT4g07370 protein) OS=Ar...    35   1.5  
tr|Q10IB5|Q10IB5_ORYSJ Transposable element protein, putative, R...    35   1.5  
tr|Q109V8|Q109V8_ORYSJ Zinc knuckle family protein, expressed OS...    35   1.5  
tr|A9RZA2|A9RZA2_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|Q9M106|Q9M106_ARATH Putative transposon protein OS=Arabidopsi...    34   3.3  
tr|Q2QVC7|Q2QVC7_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.3  
tr|O81509|O81509_ARATH T7M24.3 protein OS=Arabidopsis thaliana G...    34   3.3  
tr|A9TFR1|A9TFR1_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.3  
tr|A9T9A2|A9T9A2_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.3  
tr|A9S420|A9S420_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.3  
tr|A9RV53|A9RV53_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.3  
tr|B0DHU9|B0DHU9_LACBS Predicted protein OS=Laccaria bicolor (st...    34   3.3  
tr|Q9C8Q6|Q9C8Q6_ARATH Athila ORF 1, putative; 49840-46364 OS=Ar...    34   4.3  
tr|Q7XQ56|Q7XQ56_ORYSJ OSJNBb0046P18.4 protein OS=Oryza sativa s...    34   4.3  
tr|Q7FZS4|Q7FZS4_ARATH AT4g07360 protein OS=Arabidopsis thaliana...    34   4.3  
tr|Q6UUE9|Q6UUE9_ORYSJ Putative uncharacterized protein (Putativ...    34   4.3  
tr|A9SIR1|A9SIR1_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.3  
tr|Q9LKT2|Q9LKT2_ARATH Putative uncharacterized protein T15F17.i...    33   5.6  

>tr|Q9SKR9|Q9SKR9_ARATH Putative Athila retroelement ORF1 protein
           OS=Arabidopsis thaliana GN=At2g10670 PE=4 SV=1
          Length = 929

 Score = 41.6 bits (96), Expect = 0.021
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNA-GDNVYPIILGRP*ISEIGA 167
           +A+ T     G+ +DV V + G+E  T+FVV+   G++  P+ILGRP ++ +GA
Sbjct: 624 LADRTSKTPFGLLEDVPVMINGVEVPTDFVVLEMDGESKDPLILGRPFLASVGA 677


>tr|Q6F2G0|Q6F2G0_ORYSJ Putative uncharacterized protein
           OSJNBa0083K01.26 (Zinc knuckle family protein) OS=Oryza
           sativa subsp. japonica GN=OSJNBa0083K01.26 PE=4 SV=1
          Length = 585

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   MRMANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAGDNVY-PIILGRP*ISEIGAKQNW 179
           ++MA+ +     G+A+DV +K+       +FVV++       P+ILGRP +S  GA  + 
Sbjct: 408 LQMADSSVRYQAGIAEDVPIKIWDFFIPVDFVVLDMDTRKETPLILGRPFLSTAGANIDV 467

Query: 180 ESKVFTFPDKEKGRQIVLDLKTNESS 257
           E+    F   EK  +     +T + S
Sbjct: 468 ETSSICFHINEKEEKFEFQPRTEQCS 493


>tr|O82611|O82611_ARATH Putative athila-like protein OS=Arabidopsis
           thaliana GN=T5H22.4 PE=2 SV=1
          Length = 1064

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIGA 167
           +A+ +  +  G+ +D+ V + G+E  T+FVV+N    +  P+ILGRP ++ +GA
Sbjct: 461 LADRSSRKPFGMLKDLPVMINGVEVPTDFVVLNMEVKHKDPLILGRPFLASVGA 514


>tr|Q9LKR9|Q9LKR9_ARATH Putative uncharacterized protein T15F17.a
           OS=Arabidopsis thaliana GN=T15F17.a PE=4 SV=1
          Length = 703

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMN-AGDNVYPIILGRP*ISEIGAKQNWES 185
           +A+ +  +  G+ QD+ V + G+E  T+FVV++   +    +ILGRP ++ +GA  + + 
Sbjct: 562 LADRSSRKPFGLLQDLPVMINGVEVPTDFVVLDMEAEPKDLLILGRPFLASVGAMIDVKD 621

Query: 186 KVFTFPDKEKGRQIVLDLKTNESSSR 263
              +      G+ I L    NE+S R
Sbjct: 622 GRISL---NLGKHIKLQFDINETSQR 644


>tr|Q9C8Q7|Q9C8Q7_ARATH Athila ORF 1, putative; 43045-40843
           OS=Arabidopsis thaliana GN=T4I21.13 PE=4 SV=1
          Length = 530

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIGA 167
           +A+ T  R  G+ +DV V + G+E   +FVV+    ++  P+ILGRP ++  GA
Sbjct: 224 LADRTSRRPFGLLEDVPVMINGVEVPIDFVVLEMDEESKDPLILGRPFLASAGA 277


>tr|Q9ZQ08|Q9ZQ08_ARATH Putative Athila retroelement ORF1 protein
           OS=Arabidopsis thaliana GN=At2g06160 PE=2 SV=1
          Length = 750

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAGD-NVYPIILGRP*ISEIGAKQNWES 185
           +A+ T  R   + +DV V + G+E  T+FVV+   + +  P+ILGR  ++ +GA  +   
Sbjct: 658 LADRTSRRPFSILEDVPVMINGVEVPTDFVVLEMDEKSKDPLILGRLFLASVGAVIDVR- 716

Query: 186 KVFTFPDKEKGRQIVLDLKTNESSSR 263
             F   D   GR   L    N+S +R
Sbjct: 717 --FGKIDLNLGRHDKLQFDINKSPTR 740


>tr|Q7FZN4|Q7FZN4_ARATH AT4g08050 protein OS=Arabidopsis thaliana
           GN=T17A2.3 PE=2 SV=1
          Length = 1428

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIGA 167
           +A+ +  +  G+ +D+ V + G+E  T+FVV++   ++  P+ILGRP ++ +GA
Sbjct: 624 LADRSSRKHFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLASVGA 677


>tr|Q9LKS4|Q9LKS4_ARATH Putative uncharacterized protein T15F17.d
           OS=Arabidopsis thaliana GN=T15F17.d PE=4 SV=1
          Length = 677

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 3   MRMANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIGA 167
           + +A  +  +  G+ +D+ V + G+E  T+FVV++   ++  P+ILGRP ++ +GA
Sbjct: 540 LSVARRSSRKPFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLASVGA 595


>tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana
           GN=F7N22.7 PE=4 SV=1
          Length = 360

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   MANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIG 164
           +A+ +  +  G+ +D+ V + G+E  TNFVV++   ++  P+ILGRP ++ +G
Sbjct: 251 LADRSYRKPFGMLKDLPVMINGVEVPTNFVVLDMEVEHKDPLILGRPFLASVG 303


>tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os11g11840 PE=4 SV=1
          Length = 491

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 3   MRMANHTKARCLGVAQDVTVKVMGLECLTNFVVMNAG-DNVYPIILGRP*ISEIGA 167
           +++AN +     G+A+DV VK+       +FVV++       P+ILGRP +S +GA
Sbjct: 325 LQLANSSVRYPAGIAEDVPVKIRDFFIPVDFVVLDMDTGKEKPLILGRPFLSTVGA 380