BP912041 |
Clone id |
YMU001_000012_D04 |
Library |
YMU01 |
Length |
571 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000012_D04. |
Accession |
BP912041 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGAATTCGCGGCCGCAGGAATTTTTGATGTTTTTTGAGGATGAATATTGTCAATACAATT AGAGTCAATCATTCATGACTGTTGCCGAGTGTAGTTCAAAAACATGCCTGATTGCTGTCA CATTCTTTGAGCCATTCAGCTCATTTGTCTGGTTTGAGCTTCTTAGGTAACGGAGGCTTC ATGTTTCCACCTTCTGGCTTCCTTTTGATTCCAAGAAAATACTCGACTTTCTGATCACCA AGCATAGGAGTCAAACTCCCAATAGATTCCTTCTCTATTATTCCAAAACCACTTCTAGGA TCACTTGTTTGACCTGGTTTAATATGCCCGCTAATTACAATGTATGGAGTGTGAAGCTTC GCCTGGGCACCTCTCATCTTTTCCATGGACAACAAAGGAGTGTCTCCCGATGTCATCTGC TTTAACTTCATCTCTTCCTCATATTGTTTCATTCTCTTCTCCTGTTTCATTTTTCCAGGG CCCTTACCGTGAAACTTGTGTGAAAGTTTCCTGAAGGCTTCTTTTGGAGTCATAATCCTT CCAAACTCGTCCACTCTGTCCAGTATGATTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5XIW8 |
Definition |
sp|Q5XIW8|SNUT1_RAT U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus |
Align length |
79 |
Score (bit) |
96.3 |
E-value |
9.0e-20 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SNZ3 |
Definition |
tr|A9SNZ3|A9SNZ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
143 |
Score (bit) |
219.0 |
E-value |
6.0e-56 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912041|Adiantum capillus-veneris mRNA, clone: YMU001_000012_D04. (546 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SNZ3|A9SNZ3_PHYPA Predicted protein OS=Physcomitrella paten... 219 6e-56 tr|A7QV24|A7QV24_VITVI Chromosome undetermined scaffold_184, who... 207 2e-52 tr|Q9LFE0|Q9LFE0_ARATH Putative uncharacterized protein F5E19_12... 201 2e-50 tr|Q6K784|Q6K784_ORYSJ Os02g0511500 protein OS=Oryza sativa subs... 179 1e-43 tr|A3A7A3|A3A7A3_ORYSJ Putative uncharacterized protein OS=Oryza... 179 1e-43 tr|A2X598|A2X598_ORYSI Putative uncharacterized protein OS=Oryza... 179 1e-43 tr|Q9DF75|Q9DF75_FUGRU Squamous cell carcinoma antigen recognise... 99 1e-19 tr|Q9DF64|Q9DF64_FUGRU Squamous-cell carcinoma T-cell-recognized... 99 1e-19 tr|Q9DF63|Q9DF63_FUGRU Squamous-cell carcinoma T-cell-recognized... 99 1e-19 tr|Q9DF62|Q9DF62_FUGRU Squamous-cell carcinoma T-cell-recognized... 99 1e-19 tr|Q9DF43|Q9DF43_TETNG Squamous-cell carcinoma T-cell-recognized... 99 1e-19 tr|Q4SRX5|Q4SRX5_TETNG Chromosome 18 SCAF14485, whole genome sho... 99 1e-19 tr|Q27HF2|Q27HF2_BOVIN Squamous cell carcinoma antigen recognize... 96 9e-19 tr|B4DDH9|B4DDH9_HUMAN cDNA FLJ53820, highly similar to U4/U6.U5... 96 9e-19 tr|Q6DG11|Q6DG11_DANRE Squamous cell carcinoma antigen recognise... 96 2e-18 tr|Q7ZYC1|Q7ZYC1_XENLA MGC53679 protein OS=Xenopus laevis GN=sar... 94 5e-18 tr|Q7Q8L9|Q7Q8L9_ANOGA AGAP008549-PA (Fragment) OS=Anopheles gam... 93 8e-18 tr|B0WPY3|B0WPY3_CULQU U4/U6.U5 tri-snRNP-associated protein 1 O... 93 8e-18 tr|B4LQI3|B4LQI3_DROVI GJ17470 OS=Drosophila virilis GN=GJ17470 ... 92 2e-17 tr|B4KIT6|B4KIT6_DROMO GI17684 (Fragment) OS=Drosophila mojavens... 92 2e-17 tr|B4JR46|B4JR46_DROGR GH13064 OS=Drosophila grimshawi GN=GH1306... 92 2e-17 tr|A4S8F1|A4S8F1_OSTLU Predicted protein OS=Ostreococcus lucimar... 91 4e-17 tr|B6NWP5|B6NWP5_BRAFL Putative uncharacterized protein OS=Branc... 91 4e-17 tr|B6NWN5|B6NWN5_BRAFL Putative uncharacterized protein OS=Branc... 91 4e-17 tr|A7SFV2|A7SFV2_NEMVE Predicted protein OS=Nematostella vectens... 90 9e-17 tr|Q29LY9|Q29LY9_DROPS GA19780 OS=Drosophila pseudoobscura pseud... 89 2e-16 tr|B4G705|B4G705_DROPE GL19580 OS=Drosophila persimilis GN=GL195... 89 2e-16 tr|Q9VKD8|Q9VKD8_DROME CG6686, isoform B OS=Drosophila melanogas... 89 2e-16 tr|Q95TU2|Q95TU2_DROME CG6686, isoform A OS=Drosophila melanogas... 89 2e-16 tr|Q8T064|Q8T064_DROME LD24604p OS=Drosophila melanogaster GN=CG... 89 2e-16
>tr|A9SNZ3|A9SNZ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233757 PE=4 SV=1 Length = 1098
Score = 219 bits (559), Expect = 6e-56 Identities = 108/143 (75%), Positives = 121/143 (84%), Gaps = 13/143 (9%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I+LDRVDEFGR MTPKEAFRKLSHKFHGKGPGKMKQEKR KQY+EE+KLKQM +GDTPL+ Sbjct: 945 ILLDRVDEFGRTMTPKEAFRKLSHKFHGKGPGKMKQEKRQKQYQEELKLKQMNAGDTPLM 1004
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKE-------------SIGSLT 224 +MEK+R AQAKLH PY+VISGHIKPGQTSDPRSGF +EKE +IGSLT Sbjct: 1005 AMEKIREAQAKLHAPYLVISGHIKPGQTSDPRSGFATVEKEPVGSLTPMLGDNKNIGSLT 1064
Query: 223 PMLGDQKVEYFLGIKRKPEGGNM 155 PMLGD+KV +FLGIKRKPE G+M Sbjct: 1065 PMLGDKKVAHFLGIKRKPEVGSM 1087
>tr|A7QV24|A7QV24_VITVI Chromosome undetermined scaffold_184, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007133001 PE=4 SV=1 Length = 631
Score = 207 bits (528), Expect = 2e-52 Identities = 98/130 (75%), Positives = 114/130 (87%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I ++R DEFGRIMTPKEAFR +SHKFHGKGPGKMKQEKRMKQY+EE+KLKQM + DTP Sbjct: 494 IRIERTDEFGRIMTPKEAFRMISHKFHGKGPGKMKQEKRMKQYQEELKLKQMKNSDTPSQ 553
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKESIGSLTPMLGDQKVEYFLG 185 S+E+MR AQA+L TPY+V+SGH+KPGQTSDPRSGF +EK+ GSLTPMLGD+KVE+FLG Sbjct: 554 SVERMREAQARLKTPYLVLSGHVKPGQTSDPRSGFATVEKDVPGSLTPMLGDRKVEHFLG 613
Query: 184 IKRKPEGGNM 155 IKRK E NM Sbjct: 614 IKRKAEPSNM 623
>tr|Q9LFE0|Q9LFE0_ARATH Putative uncharacterized protein F5E19_120 OS=Arabidopsis thaliana GN=F5E19_120 PE=4 SV=1 Length = 820
Score = 201 bits (511), Expect = 2e-50 Identities = 94/129 (72%), Positives = 113/129 (87%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I ++R DEFGR +TPKEAFR LSHKFHGKGPGKMK+EKRMKQY+EE+KLKQM + DTP Sbjct: 682 IRIERTDEFGRTLTPKEAFRLLSHKFHGKGPGKMKEEKRMKQYQEELKLKQMKNSDTPSQ 741
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKESIGSLTPMLGDQKVEYFLG 185 S+++MR AQA+L TPY+V+SGH+KPGQTSDP+SGF +EK+ GSLTPMLGD+KVE+FLG Sbjct: 742 SVQRMREAQAQLKTPYLVLSGHVKPGQTSDPQSGFATVEKDVPGSLTPMLGDRKVEHFLG 801
Query: 184 IKRKPEGGN 158 IKRK E GN Sbjct: 802 IKRKSEPGN 810
>tr|Q6K784|Q6K784_ORYSJ Os02g0511500 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0001A11.17 PE=4 SV=1 Length = 259
Score = 179 bits (453), Expect = 1e-43 Identities = 87/130 (66%), Positives = 105/130 (80%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I ++R+DEFGR+MTPKEAFR LSHKFHGK PGKMKQE+R K+Y +E+K K+M S DTPL+ Sbjct: 121 IRIERIDEFGRVMTPKEAFRDLSHKFHGKAPGKMKQERRQKKYRDELKTKRMISSDTPLM 180
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKESIGSLTPMLGDQKVEYFLG 185 S EKMR AQA TPY+V+SG+ K GQTSD SGF +EKE GSLTPMLG +KVE+FLG Sbjct: 181 SAEKMREAQALSKTPYLVLSGNAKSGQTSD-ASGFATVEKEHPGSLTPMLGAKKVEHFLG 239
Query: 184 IKRKPEGGNM 155 IKR +GG + Sbjct: 240 IKRSAQGGGL 249
>tr|A3A7A3|A3A7A3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_006675 PE=4 SV=1 Length = 804
Score = 179 bits (453), Expect = 1e-43 Identities = 87/130 (66%), Positives = 105/130 (80%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I ++R+DEFGR+MTPKEAFR LSHKFHGK PGKMKQE+R K+Y +E+K K+M S DTPL+ Sbjct: 666 IRIERIDEFGRVMTPKEAFRDLSHKFHGKAPGKMKQERRQKKYRDELKTKRMISSDTPLM 725
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKESIGSLTPMLGDQKVEYFLG 185 S EKMR AQA TPY+V+SG+ K GQTSD SGF +EKE GSLTPMLG +KVE+FLG Sbjct: 726 SAEKMREAQALSKTPYLVLSGNAKSGQTSD-ASGFATVEKEHPGSLTPMLGAKKVEHFLG 784
Query: 184 IKRKPEGGNM 155 IKR +GG + Sbjct: 785 IKRSAQGGGL 794
>tr|A2X598|A2X598_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07368 PE=4 SV=1 Length = 808
Score = 179 bits (453), Expect = 1e-43 Identities = 87/130 (66%), Positives = 105/130 (80%) Frame = -3
Query: 544 IILDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLL 365 I ++R+DEFGR+MTPKEAFR LSHKFHGK PGKMKQE+R K+Y +E+K K+M S DTPL+ Sbjct: 670 IRIERIDEFGRVMTPKEAFRDLSHKFHGKAPGKMKQERRQKKYRDELKTKRMISSDTPLM 729
Query: 364 SMEKMRGAQAKLHTPYIVISGHIKPGQTSDPRSGFGIIEKESIGSLTPMLGDQKVEYFLG 185 S EKMR AQA TPY+V+SG+ K GQTSD SGF +EKE GSLTPMLG +KVE+FLG Sbjct: 730 SAEKMREAQALSKTPYLVLSGNAKSGQTSD-ASGFATVEKEHPGSLTPMLGAKKVEHFLG 788
Query: 184 IKRKPEGGNM 155 IKR +GG + Sbjct: 789 IKRSAQGGGL 798
>tr|Q9DF75|Q9DF75_FUGRU Squamous cell carcinoma antigen recognised by cytotoxic T lymphocytes OS=Fugu rubripes GN=SART1 PE=4 SV=1 Length = 772
Score = 99.0 bits (245), Expect = 1e-19 Identities = 48/79 (60%), Positives = 61/79 (77%) Frame = -3
Query: 538 LDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLLSM 359 ++ VDE GR +TPKEAFR+LSH+FHGKG GKMK EKRMK+ EEE LK+M+S DTPL ++ Sbjct: 682 IEYVDESGRRLTPKEAFRQLSHRFHGKGSGKMKTEKRMKKLEEEALLKKMSSSDTPLGTV 741
Query: 358 EKMRGAQAKLHTPYIVISG 302 ++ Q TPYIV+SG Sbjct: 742 ALLQEKQKSQKTPYIVLSG 760
>tr|Q9DF64|Q9DF64_FUGRU Squamous-cell carcinoma T-cell-recognized antigen (Fragment) OS=Fugu rubripes GN=SART1 PE=2 SV=1 Length = 173
Score = 99.0 bits (245), Expect = 1e-19 Identities = 48/79 (60%), Positives = 61/79 (77%) Frame = -3
Query: 538 LDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLLSM 359 ++ VDE GR +TPKEAFR+LSH+FHGKG GKMK EKRMK+ EEE LK+M+S DTPL ++ Sbjct: 83 IEYVDESGRRLTPKEAFRQLSHRFHGKGSGKMKTEKRMKKLEEEALLKKMSSSDTPLGTV 142
Query: 358 EKMRGAQAKLHTPYIVISG 302 ++ Q TPYIV+SG Sbjct: 143 ALLQEKQKSQKTPYIVLSG 161
>tr|Q9DF63|Q9DF63_FUGRU Squamous-cell carcinoma T-cell-recognized antigen (Fragment) OS=Fugu rubripes GN=SART1 PE=2 SV=1 Length = 391
Score = 99.0 bits (245), Expect = 1e-19 Identities = 48/79 (60%), Positives = 61/79 (77%) Frame = -3
Query: 538 LDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLLSM 359 ++ VDE GR +TPKEAFR+LSH+FHGKG GKMK EKRMK+ EEE LK+M+S DTPL ++ Sbjct: 301 IEYVDESGRRLTPKEAFRQLSHRFHGKGSGKMKTEKRMKKLEEEALLKKMSSSDTPLGTV 360
Query: 358 EKMRGAQAKLHTPYIVISG 302 ++ Q TPYIV+SG Sbjct: 361 ALLQEKQKSQKTPYIVLSG 379
>tr|Q9DF62|Q9DF62_FUGRU Squamous-cell carcinoma T-cell-recognized antigen (Fragment) OS=Fugu rubripes GN=SART1 PE=2 SV=1 Length = 480
Score = 99.0 bits (245), Expect = 1e-19 Identities = 48/79 (60%), Positives = 61/79 (77%) Frame = -3
Query: 538 LDRVDEFGRIMTPKEAFRKLSHKFHGKGPGKMKQEKRMKQYEEEMKLKQMTSGDTPLLSM 359 ++ VDE GR +TPKEAFR+LSH+FHGKG GKMK EKRMK+ EEE LK+M+S DTPL ++ Sbjct: 390 IEYVDESGRRLTPKEAFRQLSHRFHGKGSGKMKTEKRMKKLEEEALLKKMSSSDTPLGTV 449
Query: 358 EKMRGAQAKLHTPYIVISG 302 ++ Q TPYIV+SG Sbjct: 450 ALLQEKQKSQKTPYIVLSG 468
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