BP912043
Clone id YMU001_000012_D06
Library
Length 200
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CACTCTACCAAAATTTTGTGAGCAGCAGGTGCTCCTCGTCTATAATAAGGTGCTGCATGT
ATGTTCTTACAGAAAAGCAACTGCACCCCAACTCCACTGGTTGATATTGTTGTGGGACTT
GGACAAAAGAATAAATGATAATGAAGCTGAAGGAGTTCCTCCTGCATGCTGGAAGCAAAT
GCAGATATTAAGGCAATCCC
■■Homology search results ■■ -
sp_hit_id Q5R998
Definition sp|Q5R998|QTRD1_PONAB Queuine tRNA-ribosyltransferase domain-containing protein 1 OS=Pongo abelii
Align length 51
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912043|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_D06.
(200 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5R998|QTRD1_PONAB Queuine tRNA-ribosyltransferase domain-con... 30 3.8
sp|Q9H974|QTRD1_HUMAN Queuine tRNA-ribosyltransferase domain-con... 30 3.8
sp|Q7NMG4|TGT_GLOVI Queuine tRNA-ribosyltransferase OS=Gloeobact... 30 4.9
sp|A2A825|CA089_MOUSE Miro domain-containing protein C1orf89 hom... 29 6.4

>sp|Q5R998|QTRD1_PONAB Queuine tRNA-ribosyltransferase
domain-containing protein 1 OS=Pongo abelii GN=QTRTD1
PE=2 SV=1
Length = 415

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -2

Query: 166 CRRNSFSFIIIYSFVQVPQQYQPVELGCSCF----SVRTYMQHLIIDEEHL 26
C + SF I + + + P+ GCSC+ R Y+ HL++ E L
Sbjct: 324 CNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELL 374


>sp|Q9H974|QTRD1_HUMAN Queuine tRNA-ribosyltransferase
domain-containing protein 1 OS=Homo sapiens GN=QTRTD1
PE=1 SV=1
Length = 415

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -2

Query: 166 CRRNSFSFIIIYSFVQVPQQYQPVELGCSCF----SVRTYMQHLIIDEEHL 26
C + SF I + + + P+ GCSC+ R Y+ HL++ E L
Sbjct: 324 CNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELL 374


>sp|Q7NMG4|TGT_GLOVI Queuine tRNA-ribosyltransferase OS=Gloeobacter
violaceus GN=tgt PE=3 SV=1
Length = 378

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -2

Query: 121 QVPQQYQPVELGCSCFSV----RTYMQHLIIDEEHLLLT 17
Q + Y+P++ C C++ R Y+ HL+ EE L +T
Sbjct: 296 QFRRDYEPLDCVCPCYTCRHFSRAYLAHLVRSEEILAMT 334


>sp|A2A825|CA089_MOUSE Miro domain-containing protein C1orf89
homolog OS=Mus musculus GN=Gm723 PE=2 SV=1
Length = 258

Score = 29.3 bits (64), Expect = 6.4
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -2

Query: 181 HLLPACRRNSFSFIIIYSF 125
H+LPAC+ N+ +F+ ++SF
Sbjct: 127 HMLPACKENADAFLFLFSF 145


tr_hit_id A0D714
Definition tr|A0D714|A0D714_PARTE Chromosome undetermined scaffold_4, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 50
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912043|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_D06.
(200 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0D714|A0D714_PARTE Chromosome undetermined scaffold_4, whole... 33 5.4

>tr|A0D714|A0D714_PARTE Chromosome undetermined scaffold_4, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00001872001 PE=4 SV=1
Length = 352

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2

Query: 5 LPKFCEQQVLLVYNKVLHVCSYRKAT----APQLHWLILLWDLDKRINDN 142
L FCEQ L Y++++ + ++R+ A L+WL+L + D I+DN
Sbjct: 6 LRNFCEQMRALGYHRIISMENFRRPNFELVADILYWLVLKYQPDADISDN 55