BP912049 |
Clone id |
YMU001_000012_D12 |
Library |
YMU01 |
Length |
483 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000012_D12. |
Accession |
BP912049 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4160Contig1 |
Sequence |
ATGCAGAGTTGAACTGAGTGAGGACATAAATTTTGCGAATGTTGCTATTGATGCAATTAC TAACGGGGATGTCAATTAAACGGTAATTGGCGCCAAGAGGAACTGCAGGCTTTGCTCTTT TCTTTGTAAGGGGGTACAGCCTGATTCCTGCTCCGCCTCCAAGAATTATGCTCATCACAC TGCTTCCAGCATCAGGTTCGAGGCAGGCCTCATCATTGCGAGAATCAGAAACCGCACGAG GAGAGACAAGGGAGGTACCATTCCTGTTCTTCCGAACGCTTCTTGGGGCAGCACCTGGAA GCGAGATTGAAGAGGAGAATGAACCGCAGGAAGCAAAGCTAATTGAAGGCCCACGCAAGA ATGTGGGCCTCGTGAGAGTCGACGAAGCTGCGGGAAGCTGCTGCTTGCTTTCATTTGGTA CAAGGAGGTTGCGGGCAGCGGCTGCGGCCATGCCTGAGCCCCTTCCGCTCTCTTAATACG CCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P55228 |
Definition |
sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana |
Align length |
88 |
Score (bit) |
147.0 |
E-value |
3.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912049|Adiantum capillus-veneris mRNA, clone: YMU001_000012_D12. (483 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase sma... 147 3e-35 sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase sma... 146 4e-35 sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase sma... 145 7e-35 sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase sm... 145 7e-35 sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase sma... 145 9e-35 sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase sma... 143 5e-34 sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase sma... 142 6e-34 sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase sma... 142 8e-34 sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase sm... 141 2e-33 sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase sma... 115 8e-26 sp|A5GLA9|GLGC_SYNPW Glucose-1-phosphate adenylyltransferase OS=... 103 5e-22 sp|Q5N3K9|GLGC_SYNP6 Glucose-1-phosphate adenylyltransferase OS=... 102 9e-22 sp|Q31QN4|GLGC_SYNE7 Glucose-1-phosphate adenylyltransferase OS=... 102 9e-22 sp|P52415|GLGC_SYNY3 Glucose-1-phosphate adenylyltransferase OS=... 100 3e-21 sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase la... 100 3e-21 sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase la... 100 5e-21 sp|Q3MBJ4|GLGC_ANAVT Glucose-1-phosphate adenylyltransferase OS=... 100 6e-21 sp|P30521|GLGC_ANASP Glucose-1-phosphate adenylyltransferase OS=... 100 6e-21 sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase la... 99 8e-21 sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase la... 96 7e-20 sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase la... 96 9e-20 sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase la... 89 1e-17 sp|P12300|GLGL3_WHEAT Glucose-1-phosphate adenylyltransferase la... 88 2e-17 sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase la... 88 2e-17 sp|P55234|GLGL2_MAIZE Glucose-1-phosphate adenylyltransferase la... 88 2e-17 sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase la... 88 2e-17 sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltrans... 87 4e-17 sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase la... 86 7e-17 sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransferase la... 84 3e-16 sp|Q1ISX7|GLGC_ACIBL Glucose-1-phosphate adenylyltransferase OS=... 79 8e-15
>sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2 Length = 520
Score = 147 bits (370), Expect = 3e-35 Identities = 71/88 (80%), Positives = 78/88 (88%) Frame = -3
Query: 265 RNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPAVPLGAN 86 R +VSP+AVSDS+N + CL+PDA SSV+ IILGGGAG RLYPLTKKRAKPAVPLGAN Sbjct: 61 RRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
Query: 85 YRLIDIPVSNCINSNIRKIYVLTQFNSA 2 YRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSA 148
>sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1 Length = 520
Score = 146 bits (369), Expect = 4e-35 Identities = 71/88 (80%), Positives = 78/88 (88%) Frame = -3
Query: 265 RNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPAVPLGAN 86 R S+VSP+AVSDS+N + CL+PDA SV+ IILGGGAG RLYPLTKKRAKPAVPLGAN Sbjct: 61 RRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
Query: 85 YRLIDIPVSNCINSNIRKIYVLTQFNSA 2 YRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSA 148
>sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 Length = 521
Score = 145 bits (367), Expect = 7e-35 Identities = 73/95 (76%), Positives = 81/95 (85%), Gaps = 1/95 (1%) Frame = -3
Query: 283 RSVRKN-RNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKP 107 + VR N R +VSP+AVSDS+N + CL+PDA SV+ IILGGGAG RLYPLTKKRAKP Sbjct: 55 QGVRFNVRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKP 114
Query: 106 AVPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSA 2 AVPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 115 AVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 149
>sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1 Length = 512
Score = 145 bits (367), Expect = 7e-35 Identities = 71/94 (75%), Positives = 80/94 (85%) Frame = -3
Query: 283 RSVRKNRNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPA 104 R+ R + +VSP+AVSDS+N + CL+PDA SV+ IILGGGAG RLYPLTKKRAKPA Sbjct: 47 RTRRTSGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPA 106
Query: 103 VPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSA 2 VPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 107 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 140
>sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Length = 521
Score = 145 bits (366), Expect = 9e-35 Identities = 73/95 (76%), Positives = 81/95 (85%), Gaps = 1/95 (1%) Frame = -3
Query: 283 RSVRKN-RNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKP 107 + VR N R +VSP+AVSDS+N + CL+PDA SV+ IILGGGAG RLYPLTKKRAKP Sbjct: 55 QGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKP 114
Query: 106 AVPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSA 2 AVPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 115 AVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 149
>sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1 Length = 489
Score = 143 bits (360), Expect = 5e-34 Identities = 70/94 (74%), Positives = 79/94 (84%) Frame = -3
Query: 283 RSVRKNRNGTSLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPA 104 R R + +VSP+AVSDS+N + CL+P+A SV+ IILGGGAG RLYPLTKKRAKPA Sbjct: 36 RYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPA 95
Query: 103 VPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSA 2 VPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 96 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 129
>sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4 Length = 514
Score = 142 bits (359), Expect = 6e-34 Identities = 72/104 (69%), Positives = 83/104 (79%), Gaps = 9/104 (8%) Frame = -3
Query: 286 PRSVRKNRNGTS---------LVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLY 134 PR V + + +S + SPRAVSDS++ + CL+PDA +SV+ IILGGGAG RLY Sbjct: 39 PRGVASSSSSSSSAGRRRRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLY 98
Query: 133 PLTKKRAKPAVPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSA 2 PLTKKRAKPAVPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSA Sbjct: 99 PLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 142
>sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1 Length = 513
Score = 142 bits (358), Expect = 8e-34 Identities = 68/81 (83%), Positives = 75/81 (92%) Frame = -3
Query: 244 SPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPAVPLGANYRLIDIP 65 SPRAVSDS++ + CL+PDA +SV+ IILGGGAG RLYPLTKKRAKPAVPLGANYRLIDIP Sbjct: 61 SPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIP 120
Query: 64 VSNCINSNIRKIYVLTQFNSA 2 VSNC+NSNI KIYVLTQFNSA Sbjct: 121 VSNCLNSNISKIYVLTQFNSA 141
>sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1 Length = 508
Score = 141 bits (355), Expect = 2e-33 Identities = 67/82 (81%), Positives = 75/82 (91%) Frame = -3
Query: 247 VSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPAVPLGANYRLIDI 68 ++P+AVSDS+N + CL+PDA SV+ IILGGGAG RLYPLTKKRAKPAVPLGANYRLIDI Sbjct: 55 LTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI 114
Query: 67 PVSNCINSNIRKIYVLTQFNSA 2 PVSNC+NSNI KIYVLTQFNSA Sbjct: 115 PVSNCLNSNISKIYVLTQFNSA 136
>sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1 Length = 473
Score = 115 bits (289), Expect = 8e-26 Identities = 58/74 (78%), Positives = 61/74 (82%) Frame = -3
Query: 223 SRNDEACLEPDAGSSVMSIILGGGAGIRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINS 44 S + A L P SV+ IILGGGAG RLYPLTKKRAKPAVPLGANYRLIDIPVSNC+NS Sbjct: 28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 87
Query: 43 NIRKIYVLTQFNSA 2 NI KIYV TQFNSA Sbjct: 88 NISKIYVRTQFNSA 101
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PF44 |
Definition |
tr|A9PF44|A9PF44_POPTR Glucose-1-phosphate adenylyltransferase OS=Populus trichocarpa |
Align length |
139 |
Score (bit) |
151.0 |
E-value |
1.0e-35 |
Report |
|