BP912053
Clone id YMU001_000012_E04
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AATCAATGAAAGGCTTATGGTTACCCAAGCTGCTCTCATCCCCACTACGGTTTACAAAAT
GCTCATCTGTGGACTGGGTAAAGTGAGGCCCCTCATCATTAAGCACATGCTGATGCTTCC
TTATGGTAGTGGAAAAATGACCCTTCCGTCGCAACCAATATGCGAGGGGCTGTGACTGTA
CGAACTTGTCCTCGACCGTATGGGTAACTATTCCATCACCATGGGCGTAACTACGCATAT
GTCGGCACTGATCATCAAGAGCATCTTCATCTTCATCTCTGCTTCCTCTTCGACTAGAAC
ATGTCGAAGAGCTCCATTCTGAACCATTGGCAGACCCGGTCTCTTCCACAATCTCTGTGG
TTGCTAATGGCTTTGTCAAGCTAAGAGTTTCTTTCACAGTTGATACTTAGTGCGCTTCTC
CACTTTTGAAAGTACCCTCACTGTGTGATTTATCTATGACGGCTGTCCTCTCTTTGGAAG
GATGAATATCAACAGCTTGCACTAGCCTTGCCTCGTTACACTGATTCTCCTTGCCCCC
■■Homology search results ■■ -
sp_hit_id Q6ZRS2
Definition sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens
Align length 50
Score (bit) 31.6
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912053|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E04.
(538 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE... 32 2.5
sp|P17697|CLUS_BOVIN Clusterin OS=Bos taurus GN=CLU PE=1 SV=1 32 2.6
sp|A7MTT7|SURE_VIBHB 5'-nucleotidase surE OS=Vibrio harveyi (str... 30 9.8
sp|Q29549|CLUS_PIG Clusterin OS=Sus scrofa GN=CLU PE=1 SV=1 30 9.8

>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1
SV=2
Length = 3230

Score = 31.6 bits (70), Expect = 2.5
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3

Query: 315 HSEPLADPVSSTISVVANGFVKLRVSFTVDT*CASPLLKVPSLCDLSMTA 464
+S PLA PVSST+SV + + + V T+ ++P L +P L+++A
Sbjct: 1419 NSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAP-LTIPISAPLTVSA 1467


>sp|P17697|CLUS_BOVIN Clusterin OS=Bos taurus GN=CLU PE=1 SV=1
Length = 439

Score = 31.6 bits (70), Expect = 2.6
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = -1

Query: 277 DEDEDALDDQCRHMRSYAH----GDGIVTHTVEDKFVQSQPLAYWLR--RKGHFSTTIRK 116
+E + L C M+ YA G G+V H +E+ QS P +W+ R R+
Sbjct: 105 EECKPCLKQTC--MKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRE 162

Query: 115 HQHVLNDEGPHFTQST---DEHFVNR 47
HV++ FT+++ DE F +R
Sbjct: 163 QSHVMDVMEDSFTRASSIMDELFQDR 188


>sp|A7MTT7|SURE_VIBHB 5'-nucleotidase surE OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=surE PE=3 SV=1
Length = 258

Score = 29.6 bits (65), Expect = 9.8
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = -1

Query: 403 STVKETLSLTKPLATTEIVEETGSANGXXXXXXXXXXXXXXRDEDEDALDDQCRHMRSYA 224
S +L+L +PL TEI +T S G +D+ D + H +
Sbjct: 49 SGASNSLTLEQPLRVTEIAPKTFSVQGTPTDCVHFALNELMKDDLPDLVLSGINHGANLG 108

Query: 223 HG---DGIVTHTVEDKFVQSQPLAYWLRRKGHFSTTIR 119
G V +E F+ Q +A+ L K HF + +
Sbjct: 109 DDVLYSGTVAAAMEGHFLGVQAIAFSLVGKQHFESAAK 146


>sp|Q29549|CLUS_PIG Clusterin OS=Sus scrofa GN=CLU PE=1 SV=1
Length = 446

Score = 29.6 bits (65), Expect = 9.8
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Frame = -1

Query: 277 DEDEDALDDQCRHMRSYAH----GDGIVTHTVEDKFVQSQPLAYWLR--RKGHFSTTIRK 116
+E + L C M+ YA G G+V H +E+ QS P +W+ R R+
Sbjct: 111 EECKPCLKQTC--MKFYARVCRSGSGLVGHQLEEFLNQSSPFYFWINGDRIDSLMENDRQ 168

Query: 115 HQHVLNDEGPHFTQST---DEHFVNR 47
HV++ F +++ DE F +R
Sbjct: 169 QSHVMDIMEDSFNRASNIMDELFQDR 194


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912053|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E04.
(538 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******