BP912054
Clone id YMU001_000012_E05
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGCGTTTGCTATGACCAATTCTTCCCCATCTTACTCATTATTCGGAATATTTCAGTCTC
CTGCTCGACAGCCTCTCCAACTGCAGTAGCAGCATTCAATAAGCGAACATAACCCTGTTC
TTGCTCCTTCATTAGCACGGCCATTAATTTATGCATTACAACCACAGCAAGGATGTCAGG
AGGCAGCTGCAATAAATACGGCCCATACACATTCCTGTCGGTAGATGGTTCCTTTTCAAG
GATGGCTTTTTGCTCTGCACAAAGAGCATCCCCGAATGGCTCGAACCAGCTTAGCAGAAG
ACCCCGCACAAAAGGCACATTGGGAGCAAGATTCTTCTTGCACATGCGCAATATCATGTT
CTTGTACTCTAATGTAGCCTTCCAAGAGGCCTCCATCTCCATCTTTCTTTGCCTTGTCCT
CATTTTCCGATTGTATCGACGAAGAGCTACTGCAGCTTCTTTCTGTGCGGCTACTTCAGC
CAAAACTCTATCACTAACACCAGGCTCACCACACTCTGCAATGTTTGAAGCATCTCTAAC
AACAGGTTCACCCAATTCCAAGAACAAATCCCTCGCTTGTAGTT
■■Homology search results ■■ -
sp_hit_id Q93Y94
Definition sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
Align length 140
Score (bit) 117.0
E-value 3.0e-26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912054|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E05.
(584 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri... 117 3e-26
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr... 117 4e-26
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas... 114 5e-25
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast... 112 1e-24
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast... 109 1e-23
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast... 103 8e-22
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri... 102 2e-21
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 100 9e-21
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 100 9e-21
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 100 9e-21
sp|Q88XU0|AROB_LACPL 3-dehydroquinate synthase OS=Lactobacillus ... 36 0.16
sp|Q01026|VG40_SHV21 Uncharacterized gene 40 protein OS=Saimirii... 33 0.80
sp|Q38X86|AROB_LACSS 3-dehydroquinate synthase OS=Lactobacillus ... 33 1.4
sp|A1CEH4|MON1_ASPCL Vacuolar fusion protein mon1 OS=Aspergillus... 32 1.8
sp|Q9A5C1|SYA_CAUCR Alanyl-tRNA synthetase OS=Caulobacter cresce... 32 3.0
sp|B0SZN4|SYA_CAUSK Alanyl-tRNA synthetase OS=Caulobacter sp. (s... 31 3.9
sp|A3DBU4|RUVB_CLOTH Holliday junction ATP-dependent DNA helicas... 31 3.9
sp|Q14157|UBP2L_HUMAN Ubiquitin-associated protein 2-like OS=Hom... 30 6.7
sp|Q4WHL1|MON1_ASPFU Vacuolar fusion protein mon1 OS=Aspergillus... 30 6.7
sp|A6TEC0|LSRK_KLEP7 Autoinducer 2 kinase lsrK OS=Klebsiella pne... 30 6.7
sp|A4WER6|LSRK_ENT38 Autoinducer 2 kinase lsrK OS=Enterobacter s... 30 6.7
sp|B1LFA4|LSRK_ECOSM Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|P77432|LSRK_ECOLI Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|B1IRU9|LSRK_ECOLC Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|A8A064|LSRK_ECOHS Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|B1XE99|LSRK_ECODH Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|Q8XAY5|LSRK_ECO57 Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|A7ZLW9|LSRK_ECO24 Autoinducer 2 kinase lsrK OS=Escherichia co... 30 6.7
sp|A5EML9|SYA_BRASB Alanyl-tRNA synthetase OS=Bradyrhizobium sp.... 30 8.8

>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002

Score = 117 bits (294), Expect = 3e-26
Identities = 59/140 (42%), Positives = 89/140 (63%)
Frame = -3

Query: 438 RYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALC 259
+YN +R RQ K+E EA +A EY+ +++ MC++ LAPN+P+++ L L WFEP DA+
Sbjct: 165 KYNL-LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 223

Query: 258 AEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAV 79
AEQK + +R Y P+ QLP +++AV+ MHKLM +LM G R++ AA+ +
Sbjct: 224 AEQKLC---DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280

Query: 78 GEAVEQETEIFRIMSKMGKN 19
GEA+E E I R + K K+
Sbjct: 281 GEAIEHEARIHRFLEKTKKS 300


>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
Length = 1002

Score = 117 bits (293), Expect = 4e-26
Identities = 57/135 (42%), Positives = 86/135 (63%)
Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
+R RQ K+E EA +A EY+ +++ MC++ LAPN+P+++ L L WFEP DA+ AEQK
Sbjct: 169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKL 228

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVE 64
+ +R Y P+ QLP +++AV+ MHKLM +LM G R++ AA+ +GEA+E
Sbjct: 229 C---DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIE 285

Query: 63 QETEIFRIMSKMGKN 19
E I R + K K+
Sbjct: 286 HEARIHRFLEKTKKS 300


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial OS=Nicotiana tabacum
GN=RPOT2-TOM PE=2 SV=2
Length = 1021

Score = 114 bits (284), Expect = 5e-25
Identities = 57/140 (40%), Positives = 85/140 (60%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
R+Y + ++ RQ K+E EA +A EYK ++ MC++ LAPN+P+V+ L L WFEP D +
Sbjct: 181 RKY-QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 239

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+ + + Y YL QLP D++AV+ MHKLM +LM + G R++ AA
Sbjct: 240 AEEQELCSQ---GKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALV 296

Query: 81 VGEAVEQETEIFRIMSKMGK 22
+G+A+EQE I + K K
Sbjct: 297 IGDAIEQEVRIHNFLEKTKK 316


>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Nicotiana sylvestris
GN=RPOT2 PE=2 SV=2
Length = 1020

Score = 112 bits (280), Expect = 1e-24
Identities = 56/140 (40%), Positives = 84/140 (60%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
R+Y + ++ RQ K+E EA +A EYK ++ MC++ LAPN+P+V+ L L WFEP D +
Sbjct: 180 RKY-QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 238

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+ + + Y Y QLP D++AV+ MHKLM +LM + G R++ AA
Sbjct: 239 AEEQELCSQ---GKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALV 295

Query: 81 VGEAVEQETEIFRIMSKMGK 22
+G+A+EQE I + K K
Sbjct: 296 IGDAIEQEVRIHNFLEKTKK 315


>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
Length = 993

Score = 109 bits (272), Expect = 1e-23
Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
+R RQ K E EA + EY+++ MC+KNLAPN+P+V+ + L WF+P D + EQK
Sbjct: 162 LRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQK- 220

Query: 243 ILEKEPSTD-RNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAV 67
L+K S R Y P++ LP D +AV+VMHK+M ++M E G ++++ AA ++G A+
Sbjct: 221 -LQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAI 279

Query: 66 EQETEIFRIMSKMGKN 19
EQE I + + KN
Sbjct: 280 EQEVRIHNFLKRTRKN 295


>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=RPOT2 PE=2 SV=1
Length = 1011

Score = 103 bits (256), Expect = 8e-22
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Frame = -3

Query: 414 RQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKAI-L 238
RQ K+E E +A EY ++ MC++ LAPN+P+V+ L L WFEP DA+ +Q+ L
Sbjct: 180 RQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRL 239

Query: 237 EKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVEQE 58
K +T Y YL QLP D ++V+ MHKLM LM + G V++++AA VG+A+EQE
Sbjct: 240 GKSKAT----YAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQE 295

Query: 57 TEIFRIMSKMGK 22
I + K K
Sbjct: 296 IRICTFLDKKKK 307


>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
Length = 976

Score = 102 bits (253), Expect = 2e-21
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
++ RQ KME E +A E + ++ MC++ LAPN+P+++ L L WFEP +A+ +
Sbjct: 135 LKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDT 194

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQE-QGYVRLLNAATAVGEAV 67
K+ + Y P++ QLP D +AV+ MHK+M +LM E G V+L+NAAT +GEAV
Sbjct: 195 FKIKK---GKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGEAV 251

Query: 66 EQETEIFRIMSKMGK 22
EQE I + K K
Sbjct: 252 EQEVRINSFLQKKNK 266


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
Length = 977

Score = 99.8 bits (247), Expect = 9e-21
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
RR +R RQ K E EA + EY+ + MC+K LAPN+P+V+ LLL WFEP A+
Sbjct: 137 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 196

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
EQ A + R + P++ LP D +AV+VMHKLM +LM +E+ V+++ AA
Sbjct: 197 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 253

Query: 84 AVGEAVEQETEIFRIMSKMGK 22
+G AVE E I + K K
Sbjct: 254 QIGMAVENEVRIHNFLEKTKK 274


>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
Length = 977

Score = 99.8 bits (247), Expect = 9e-21
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
RR +R RQ K E EA + EY+ + MC+K LAPN+P+V+ LLL WFEP A+
Sbjct: 136 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 195

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
EQ A + R + P++ LP D +AV+VMHKLM +LM +E+ V+++ AA
Sbjct: 196 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 252

Query: 84 AVGEAVEQETEIFRIMSKMGK 22
+G AVE E I + K K
Sbjct: 253 QIGMAVENEVRIHNFLEKTKK 273


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
Length = 977

Score = 99.8 bits (247), Expect = 9e-21
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
RR +R RQ K E EA + EY+ + MC+K LAPN+P+V+ LLL WFEP A+
Sbjct: 137 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 196

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
EQ A + R + P++ LP D +AV+VMHKLM +LM +E+ V+++ AA
Sbjct: 197 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 253

Query: 84 AVGEAVEQETEIFRIMSKMGK 22
+G AVE E I + K K
Sbjct: 254 QIGMAVENEVRIHNFLEKTKK 274


tr_hit_id Q8SBD3
Definition tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens
Align length 141
Score (bit) 146.0
E-value 9.0e-34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912054|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E05.
(584 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 146 9e-34
tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 146 9e-34
tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 146 9e-34
tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 140 4e-32
tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 140 4e-32
tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 140 4e-32
tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorf... 129 2e-28
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 120 4e-26
tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 120 6e-26
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini... 115 1e-24
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a... 115 2e-24
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS... 112 1e-23
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 112 2e-23
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu... 112 2e-23
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini... 112 2e-23
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom... 111 3e-23
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 109 1e-22
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS... 109 1e-22
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 109 1e-22
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini... 109 1e-22
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 108 2e-22
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 108 2e-22
tr|A3BWE4|A3BWE4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 108 2e-22
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 107 6e-22
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 107 6e-22
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass... 107 6e-22
tr|A5B3H8|A5B3H8_VITVI Putative uncharacterized protein OS=Vitis... 105 1e-21
tr|Q6LAJ6|Q6LAJ6_ARATH DNA-directed RNA polymerase (Fragment) OS... 103 7e-21
tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 103 7e-21
tr|Q8RXB9|Q8RXB9_ARATH At1g68990/T6L1_17 OS=Arabidopsis thaliana... 102 2e-20

>tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens GN=rpoT2 PE=2 SV=1
Length = 1065

Score = 146 bits (368), Expect = 9e-34
Identities = 68/141 (48%), Positives = 100/141 (70%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
+R R++ RQ K+E EA +A EY+ ++ MC+K+LAPN+PF + LLLSWFEP D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+A +E R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81 VGEAVEQETEIFRIMSKMGKN 19
+GEAVEQE IF++M+ K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens GN=rpoT2 PE=3 SV=1
Length = 1065

Score = 146 bits (368), Expect = 9e-34
Identities = 68/141 (48%), Positives = 100/141 (70%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
+R R++ RQ K+E EA +A EY+ ++ MC+K+LAPN+PF + LLLSWFEP D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+A +E R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81 VGEAVEQETEIFRIMSKMGKN 19
+GEAVEQE IF++M+ K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_223008 PE=3 SV=1
Length = 1065

Score = 146 bits (368), Expect = 9e-34
Identities = 68/141 (48%), Positives = 100/141 (70%)
Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
+R R++ RQ K+E EA +A EY+ ++ MC+K+LAPN+PF + LLLSWFEP D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+A +E R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81 VGEAVEQETEIFRIMSKMGKN 19
+GEAVEQE IF++M+ K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens GN=rpoT1 PE=2 SV=1
Length = 1087

Score = 140 bits (354), Expect = 4e-32
Identities = 67/136 (49%), Positives = 94/136 (69%)
Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
+ +R RQ K+E EA +A EYK ++ MCKKNLAPN+P R LLL WFEP DA+ EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
K E+ R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69 VEQETEIFRIMSKMGK 22
VEQE I++++ K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens GN=rpoT1 PE=3 SV=1
Length = 1087

Score = 140 bits (354), Expect = 4e-32
Identities = 67/136 (49%), Positives = 94/136 (69%)
Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
+ +R RQ K+E EA +A EYK ++ MCKKNLAPN+P R LLL WFEP DA+ EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
K E+ R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69 VEQETEIFRIMSKMGK 22
VEQE I++++ K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_196123 PE=3 SV=1
Length = 1088

Score = 140 bits (354), Expect = 4e-32
Identities = 67/136 (49%), Positives = 94/136 (69%)
Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
+ +R RQ K+E EA +A EYK ++ MCKKNLAPN+P R LLL WFEP DA+ EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
K E+ R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69 VEQETEIFRIMSKMGK 22
VEQE I++++ K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorffii
GN=rpoT PE=4 SV=1
Length = 1002

Score = 129 bits (323), Expect = 2e-28
Identities = 61/135 (45%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
R++ RQ+K+E++A A EY+ +++ MC+K LAPN+PF + L++SWFEP D + E
Sbjct: 170 RRLFNRQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKEL 229

Query: 249 KAILEKEPSTDRNVYGPYL--LQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVG 76
KAI ++EP DR+ YGP L L D+LAV+ MH+L+A++M++ + G +RL N A +G
Sbjct: 230 KAIEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIG 289

Query: 75 EAVEQETEIFRIMSK 31
+AVEQE +I R + K
Sbjct: 290 DAVEQEIKIRRALKK 304


>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
oleracea GN=rpoT2 PE=2 SV=1
Length = 1036

Score = 120 bits (302), Expect = 4e-26
Identities = 60/136 (44%), Positives = 86/136 (63%)
Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
+K+R RQ K+E E+ +A EYK ++ MCK LAPN+P+V+ L L WFEPF D++ +Q
Sbjct: 197 QKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQ 256

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
+ I + R YG Y QLP D++A++ MHKLM +LM G V+++ AA A+GEA
Sbjct: 257 ELIRQ---GKCRGAYGTYFDQLPADMMAIITMHKLMGMLMTGSGHGSVKVVQAACALGEA 313

Query: 69 VEQETEIFRIMSKMGK 22
+EQE I + K K
Sbjct: 314 IEQEVRIHTFLEKAKK 329


>tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_222742 PE=3 SV=1
Length = 861

Score = 120 bits (301), Expect = 6e-26
Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 3/142 (2%)
Frame = -3

Query: 435 YNRKMRTRQRKM--EMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
+N+ RQR++ E EA A +Y+ I MC+K LAPN+P + LLL W+EP DA+
Sbjct: 7 HNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDAI 66

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
EQ+A E E +R YGP+L QLPP LAV+ MH L+A++M ++ GYV+++ AA
Sbjct: 67 AEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQAALH 126

Query: 81 VGEAVEQETEIFRI-MSKMGKN 19
+GEAVEQE I ++ + K KN
Sbjct: 127 IGEAVEQEVLIRKLRIGKAKKN 148


>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis
vinifera GN=GSVIVT00021161001 PE=3 SV=1
Length = 978

Score = 115 bits (289), Expect = 1e-24
Identities = 58/134 (43%), Positives = 81/134 (60%)
Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
+R RQ KME EA +A EY+ ++ MC++ LAPN+P+++ L L WFEP D + AEQ
Sbjct: 143 LRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDL 202

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVE 64
+ +R Y PY LP D++AV+ MHKLM +LM + G R++ AA +GEA+E
Sbjct: 203 C---KQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIE 259

Query: 63 QETEIFRIMSKMGK 22
E I R M K K
Sbjct: 260 HEVRIQRFMEKTKK 273