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NBDC - LSDB Archive
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BP912054
Clone id YMU001_000012_E05
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCGTTTGCTATGACCAATTCTTCCCCATCTTACTCATTATTCGGAATATTTCAGTCTC
CTGCTCGACAGCCTCTCCAACTGCAGTAGCAGCATTCAATAAGCGAACATAACCCTGTTC
TTGCTCCTTCATTAGCACGGCCATTAATTTATGCATTACAACCACAGCAAGGATGTCAGG
AGGCAGCTGCAATAAATACGGCCCATACACATTCCTGTCGGTAGATGGTTCCTTTTCAAG
GATGGCTTTTTGCTCTGCACAAAGAGCATCCCCGAATGGCTCGAACCAGCTTAGCAGAAG
ACCCCGCACAAAAGGCACATTGGGAGCAAGATTCTTCTTGCACATGCGCAATATCATGTT
CTTGTACTCTAATGTAGCCTTCCAAGAGGCCTCCATCTCCATCTTTCTTTGCCTTGTCCT
CATTTTCCGATTGTATCGACGAAGAGCTACTGCAGCTTCTTTCTGTGCGGCTACTTCAGC
CAAAACTCTATCACTAACACCAGGCTCACCACACTCTGCAATGTTTGAAGCATCTCTAAC
AACAGGTTCACCCAATTCCAAGAACAAATCCCTCGCTTGTAGTT
■■Homology search results ■■ -
sp_hit_id Q93Y94
Definition sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
Align length 140
Score (bit) 117.0
E-value 3.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912054|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E05.
         (584 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri...   117   3e-26
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr...   117   4e-26
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas...   114   5e-25
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast...   112   1e-24
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast...   109   1e-23
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast...   103   8e-22
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri...   102   2e-21
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast...   100   9e-21
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas...   100   9e-21
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas...   100   9e-21
sp|Q88XU0|AROB_LACPL 3-dehydroquinate synthase OS=Lactobacillus ...    36   0.16 
sp|Q01026|VG40_SHV21 Uncharacterized gene 40 protein OS=Saimirii...    33   0.80 
sp|Q38X86|AROB_LACSS 3-dehydroquinate synthase OS=Lactobacillus ...    33   1.4  
sp|A1CEH4|MON1_ASPCL Vacuolar fusion protein mon1 OS=Aspergillus...    32   1.8  
sp|Q9A5C1|SYA_CAUCR Alanyl-tRNA synthetase OS=Caulobacter cresce...    32   3.0  
sp|B0SZN4|SYA_CAUSK Alanyl-tRNA synthetase OS=Caulobacter sp. (s...    31   3.9  
sp|A3DBU4|RUVB_CLOTH Holliday junction ATP-dependent DNA helicas...    31   3.9  
sp|Q14157|UBP2L_HUMAN Ubiquitin-associated protein 2-like OS=Hom...    30   6.7  
sp|Q4WHL1|MON1_ASPFU Vacuolar fusion protein mon1 OS=Aspergillus...    30   6.7  
sp|A6TEC0|LSRK_KLEP7 Autoinducer 2 kinase lsrK OS=Klebsiella pne...    30   6.7  
sp|A4WER6|LSRK_ENT38 Autoinducer 2 kinase lsrK OS=Enterobacter s...    30   6.7  
sp|B1LFA4|LSRK_ECOSM Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|P77432|LSRK_ECOLI Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|B1IRU9|LSRK_ECOLC Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|A8A064|LSRK_ECOHS Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|B1XE99|LSRK_ECODH Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|Q8XAY5|LSRK_ECO57 Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|A7ZLW9|LSRK_ECO24 Autoinducer 2 kinase lsrK OS=Escherichia co...    30   6.7  
sp|A5EML9|SYA_BRASB Alanyl-tRNA synthetase OS=Bradyrhizobium sp....    30   8.8  

>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
           OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
          Length = 1002

 Score =  117 bits (294), Expect = 3e-26
 Identities = 59/140 (42%), Positives = 89/140 (63%)
 Frame = -3

Query: 438 RYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALC 259
           +YN  +R RQ K+E EA  +A  EY+ +++ MC++ LAPN+P+++ L L WFEP  DA+ 
Sbjct: 165 KYNL-LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 223

Query: 258 AEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAV 79
           AEQK     +   +R  Y P+  QLP +++AV+ MHKLM +LM     G  R++ AA+ +
Sbjct: 224 AEQKLC---DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280

Query: 78  GEAVEQETEIFRIMSKMGKN 19
           GEA+E E  I R + K  K+
Sbjct: 281 GEAIEHEARIHRFLEKTKKS 300


>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
           OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
          Length = 1002

 Score =  117 bits (293), Expect = 4e-26
 Identities = 57/135 (42%), Positives = 86/135 (63%)
 Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
           +R RQ K+E EA  +A  EY+ +++ MC++ LAPN+P+++ L L WFEP  DA+ AEQK 
Sbjct: 169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKL 228

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVE 64
               +   +R  Y P+  QLP +++AV+ MHKLM +LM     G  R++ AA+ +GEA+E
Sbjct: 229 C---DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIE 285

Query: 63  QETEIFRIMSKMGKN 19
            E  I R + K  K+
Sbjct: 286 HEARIHRFLEKTKKS 300


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial OS=Nicotiana tabacum
           GN=RPOT2-TOM PE=2 SV=2
          Length = 1021

 Score =  114 bits (284), Expect = 5e-25
 Identities = 57/140 (40%), Positives = 85/140 (60%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           R+Y + ++ RQ K+E EA  +A  EYK ++  MC++ LAPN+P+V+ L L WFEP  D +
Sbjct: 181 RKY-QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 239

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+   +      +  Y  YL QLP D++AV+ MHKLM +LM   + G  R++ AA  
Sbjct: 240 AEEQELCSQ---GKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALV 296

Query: 81  VGEAVEQETEIFRIMSKMGK 22
           +G+A+EQE  I   + K  K
Sbjct: 297 IGDAIEQEVRIHNFLEKTKK 316


>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial OS=Nicotiana sylvestris
           GN=RPOT2 PE=2 SV=2
          Length = 1020

 Score =  112 bits (280), Expect = 1e-24
 Identities = 56/140 (40%), Positives = 84/140 (60%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           R+Y + ++ RQ K+E EA  +A  EYK ++  MC++ LAPN+P+V+ L L WFEP  D +
Sbjct: 180 RKY-QTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 238

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+   +      +  Y  Y  QLP D++AV+ MHKLM +LM   + G  R++ AA  
Sbjct: 239 AEEQELCSQ---GKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALV 295

Query: 81  VGEAVEQETEIFRIMSKMGK 22
           +G+A+EQE  I   + K  K
Sbjct: 296 IGDAIEQEVRIHNFLEKTKK 315


>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
           OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
          Length = 993

 Score =  109 bits (272), Expect = 1e-23
 Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
 Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
           +R RQ K E EA  +   EY+++   MC+KNLAPN+P+V+ + L WF+P  D +  EQK 
Sbjct: 162 LRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQK- 220

Query: 243 ILEKEPSTD-RNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAV 67
            L+K  S   R  Y P++  LP D +AV+VMHK+M ++M   E G ++++ AA ++G A+
Sbjct: 221 -LQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAI 279

Query: 66  EQETEIFRIMSKMGKN 19
           EQE  I   + +  KN
Sbjct: 280 EQEVRIHNFLKRTRKN 295


>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial OS=Arabidopsis thaliana
           GN=RPOT2 PE=2 SV=1
          Length = 1011

 Score =  103 bits (256), Expect = 8e-22
 Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
 Frame = -3

Query: 414 RQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKAI-L 238
           RQ K+E E   +A  EY  ++  MC++ LAPN+P+V+ L L WFEP  DA+  +Q+   L
Sbjct: 180 RQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRL 239

Query: 237 EKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVEQE 58
            K  +T    Y  YL QLP D ++V+ MHKLM  LM   + G V++++AA  VG+A+EQE
Sbjct: 240 GKSKAT----YAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQE 295

Query: 57  TEIFRIMSKMGK 22
             I   + K  K
Sbjct: 296 IRICTFLDKKKK 307


>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
           OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
          Length = 976

 Score =  102 bits (253), Expect = 2e-21
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
 Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
           ++ RQ KME E   +A  E + ++  MC++ LAPN+P+++ L L WFEP  +A+  +   
Sbjct: 135 LKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDT 194

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQE-QGYVRLLNAATAVGEAV 67
              K+    +  Y P++ QLP D +AV+ MHK+M +LM   E  G V+L+NAAT +GEAV
Sbjct: 195 FKIKK---GKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGEAV 251

Query: 66  EQETEIFRIMSKMGK 22
           EQE  I   + K  K
Sbjct: 252 EQEVRINSFLQKKNK 266


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
           OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
          Length = 977

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           RR    +R RQ K E EA  +   EY+ +   MC+K LAPN+P+V+ LLL WFEP   A+
Sbjct: 137 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 196

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
             EQ A   +     R  + P++  LP D +AV+VMHKLM +LM   +E+  V+++ AA 
Sbjct: 197 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 253

Query: 84  AVGEAVEQETEIFRIMSKMGK 22
            +G AVE E  I   + K  K
Sbjct: 254 QIGMAVENEVRIHNFLEKTKK 274


>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
          Length = 977

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           RR    +R RQ K E EA  +   EY+ +   MC+K LAPN+P+V+ LLL WFEP   A+
Sbjct: 136 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 195

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
             EQ A   +     R  + P++  LP D +AV+VMHKLM +LM   +E+  V+++ AA 
Sbjct: 196 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 252

Query: 84  AVGEAVEQETEIFRIMSKMGK 22
            +G AVE E  I   + K  K
Sbjct: 253 QIGMAVENEVRIHNFLEKTKK 273


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
          Length = 977

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           RR    +R RQ K E EA  +   EY+ +   MC+K LAPN+P+V+ LLL WFEP   A+
Sbjct: 137 RRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAI 196

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMK-EQEQGYVRLLNAAT 85
             EQ A   +     R  + P++  LP D +AV+VMHKLM +LM   +E+  V+++ AA 
Sbjct: 197 EKEQNA---ETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 253

Query: 84  AVGEAVEQETEIFRIMSKMGK 22
            +G AVE E  I   + K  K
Sbjct: 254 QIGMAVENEVRIHNFLEKTKK 274
tr_hit_id Q8SBD3
Definition tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens
Align length 141
Score (bit) 146.0
E-value 9.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912054|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_E05.
         (584 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   146   9e-34
tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   146   9e-34
tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   146   9e-34
tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   140   4e-32
tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   140   4e-32
tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   140   4e-32
tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorf...   129   2e-28
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o...   120   4e-26
tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   120   6e-26
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini...   115   1e-24
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a...   115   2e-24
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS...   112   1e-23
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G...   112   2e-23
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu...   112   2e-23
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini...   112   2e-23
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom...   111   3e-23
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   109   1e-22
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS...   109   1e-22
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   109   1e-22
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini...   109   1e-22
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   108   2e-22
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   108   2e-22
tr|A3BWE4|A3BWE4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   108   2e-22
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu...   107   6e-22
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu...   107   6e-22
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass...   107   6e-22
tr|A5B3H8|A5B3H8_VITVI Putative uncharacterized protein OS=Vitis...   105   1e-21
tr|Q6LAJ6|Q6LAJ6_ARATH DNA-directed RNA polymerase (Fragment) OS...   103   7e-21
tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sati...   103   7e-21
tr|Q8RXB9|Q8RXB9_ARATH At1g68990/T6L1_17 OS=Arabidopsis thaliana...   102   2e-20

>tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT2 PE=2 SV=1
          Length = 1065

 Score =  146 bits (368), Expect = 9e-34
 Identities = 68/141 (48%), Positives = 100/141 (70%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           +R  R++  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+PF + LLLSWFEP  D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+A   +E    R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA  
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81  VGEAVEQETEIFRIMSKMGKN 19
           +GEAVEQE  IF++M+   K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT2 PE=3 SV=1
          Length = 1065

 Score =  146 bits (368), Expect = 9e-34
 Identities = 68/141 (48%), Positives = 100/141 (70%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           +R  R++  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+PF + LLLSWFEP  D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+A   +E    R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA  
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81  VGEAVEQETEIFRIMSKMGKN 19
           +GEAVEQE  IF++M+   K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_223008 PE=3 SV=1
          Length = 1065

 Score =  146 bits (368), Expect = 9e-34
 Identities = 68/141 (48%), Positives = 100/141 (70%)
 Frame = -3

Query: 441 RRYNRKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           +R  R++  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+PF + LLLSWFEP  D +
Sbjct: 207 KRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGI 266

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+A   +E    R++YGPY+ QLP D+LAV+ MH+LM +LM +QE G V++++AA  
Sbjct: 267 LEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVV 326

Query: 81  VGEAVEQETEIFRIMSKMGKN 19
           +GEAVEQE  IF++M+   K+
Sbjct: 327 IGEAVEQEVRIFQLMNSQKKS 347


>tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT1 PE=2 SV=1
          Length = 1087

 Score =  140 bits (354), Expect = 4e-32
 Identities = 67/136 (49%), Positives = 94/136 (69%)
 Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
           + +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+P  R LLL WFEP  DA+  EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
           K   E+     R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA  +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69  VEQETEIFRIMSKMGK 22
           VEQE  I++++    K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT1 PE=3 SV=1
          Length = 1087

 Score =  140 bits (354), Expect = 4e-32
 Identities = 67/136 (49%), Positives = 94/136 (69%)
 Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
           + +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+P  R LLL WFEP  DA+  EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
           K   E+     R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA  +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69  VEQETEIFRIMSKMGK 22
           VEQE  I++++    K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_196123 PE=3 SV=1
          Length = 1088

 Score =  140 bits (354), Expect = 4e-32
 Identities = 67/136 (49%), Positives = 94/136 (69%)
 Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
           + +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+P  R LLL WFEP  DA+  EQ
Sbjct: 227 KALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQ 286

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
           K   E+     R +YGP+L +LP D+LAV+ MH+LM++LM +QE G V++++AA  +GEA
Sbjct: 287 KDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEA 346

Query: 69  VEQETEIFRIMSKMGK 22
           VEQE  I++++    K
Sbjct: 347 VEQEVGIYKLLRSKRK 362


>tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorffii
           GN=rpoT PE=4 SV=1
          Length = 1002

 Score =  129 bits (323), Expect = 2e-28
 Identities = 61/135 (45%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
 Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
           R++  RQ+K+E++A   A  EY+ +++ MC+K LAPN+PF + L++SWFEP  D +  E 
Sbjct: 170 RRLFNRQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKEL 229

Query: 249 KAILEKEPSTDRNVYGPYL--LQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVG 76
           KAI ++EP  DR+ YGP L    L  D+LAV+ MH+L+A++M++ + G +RL N A  +G
Sbjct: 230 KAIEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIG 289

Query: 75  EAVEQETEIFRIMSK 31
           +AVEQE +I R + K
Sbjct: 290 DAVEQEIKIRRALKK 304


>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
           oleracea GN=rpoT2 PE=2 SV=1
          Length = 1036

 Score =  120 bits (302), Expect = 4e-26
 Identities = 60/136 (44%), Positives = 86/136 (63%)
 Frame = -3

Query: 429 RKMRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQ 250
           +K+R RQ K+E E+  +A  EYK ++  MCK  LAPN+P+V+ L L WFEPF D++  +Q
Sbjct: 197 QKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQ 256

Query: 249 KAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEA 70
           + I +      R  YG Y  QLP D++A++ MHKLM +LM     G V+++ AA A+GEA
Sbjct: 257 ELIRQ---GKCRGAYGTYFDQLPADMMAIITMHKLMGMLMTGSGHGSVKVVQAACALGEA 313

Query: 69  VEQETEIFRIMSKMGK 22
           +EQE  I   + K  K
Sbjct: 314 IEQEVRIHTFLEKAKK 329


>tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_222742 PE=3 SV=1
          Length = 861

 Score =  120 bits (301), Expect = 6e-26
 Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 3/142 (2%)
 Frame = -3

Query: 435 YNRKMRTRQRKM--EMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDAL 262
           +N+    RQR++  E EA   A  +Y+  I  MC+K LAPN+P  + LLL W+EP  DA+
Sbjct: 7   HNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDAI 66

Query: 261 CAEQKAILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATA 82
             EQ+A  E E   +R  YGP+L QLPP  LAV+ MH L+A++M  ++ GYV+++ AA  
Sbjct: 67  AEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQAALH 126

Query: 81  VGEAVEQETEIFRI-MSKMGKN 19
           +GEAVEQE  I ++ + K  KN
Sbjct: 127 IGEAVEQEVLIRKLRIGKAKKN 148


>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis
           vinifera GN=GSVIVT00021161001 PE=3 SV=1
          Length = 978

 Score =  115 bits (289), Expect = 1e-24
 Identities = 58/134 (43%), Positives = 81/134 (60%)
 Frame = -3

Query: 423 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVPFVRGLLLSWFEPFGDALCAEQKA 244
           +R RQ KME EA  +A  EY+ ++  MC++ LAPN+P+++ L L WFEP  D + AEQ  
Sbjct: 143 LRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDL 202

Query: 243 ILEKEPSTDRNVYGPYLLQLPPDILAVVVMHKLMAVLMKEQEQGYVRLLNAATAVGEAVE 64
               +   +R  Y PY   LP D++AV+ MHKLM +LM  +  G  R++ AA  +GEA+E
Sbjct: 203 C---KQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIE 259

Query: 63  QETEIFRIMSKMGK 22
            E  I R M K  K
Sbjct: 260 HEVRIQRFMEKTKK 273