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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912061
Clone id YMU001_000012_F01
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGGATGGCTAAGGCAAACAGGAGCATGAGCAGCAGCAGCAATGCCACAAAACACTTTCT
TCCAGTCGATCCTAAATAGCTTCACAACTAACAAAAACATGCTTTTCGGTCTTCAGATGA
CCAAATTTCTACTTGCAGCAAACAATCTGCCTTCGTGATAATAAGGTTAAGATTTCCAAT
GGGAAAAAAATGCAGGAAGAGAGAATTTCATCTGCACAAGATAACATAGGTTAACCTTTT
CAAAAGGATGTAATTGAAATCTTCTAAATCATGCCTCGATTTGTCCCAGCAATACTTTGA
CTACATCAACTTCAAAGTTACCACAATTTGTAAATCATGAGAGAGGCAAATAGTGCACCC
ACCACAACTCCTTTGTTCTCGAGGGTCTACAACAAGCAATCTGTCAGCACCTCCCCACCA
ATCGGAGATGTCACAATACCCTGTGCATATCATCTCGGTCAGTATCAGACTTCAAGCTCA
TAATTTACAAGCAACATTAGGCTGTTTCAGAAAACTACTCTGGAGTAGATAG
■■Homology search results ■■ -
sp_hit_id Q6ZJW9
Definition sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 42.0
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912061|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F01.
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa sub...    42   0.002
sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa sub...    42   0.002
sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thal...    40   0.007
sp|P80143|UDDP_SULAC Undecaprenyl-diphosphatase OS=Sulfolobus ac...    32   2.5  

>sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp.
           japonica GN=ARP4 PE=2 SV=1
          Length = 443

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDC++ +LE+KGVV+
Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227


>sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa subsp.
           indica GN=ARP4 PE=2 SV=2
          Length = 443

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDC++ +LE+KGVV+
Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227


>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis
           thaliana GN=ARP4 PE=1 SV=1
          Length = 441

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + +V+SP+GGE LTDCLL +LE+KG+ +
Sbjct: 197 KAVVSSPLGGEFLTDCLLKSLESKGIKI 224


>sp|P80143|UDDP_SULAC Undecaprenyl-diphosphatase OS=Sulfolobus
           acidocaldarius GN=sepP PE=1 SV=2
          Length = 206

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = -1

Query: 304 VVKVLLGQIEA*FRRFQLHPFEKVNLCYLVQMKFSLPAFFSHWKS*PYYHEGRLFAASRN 125
           V+ ++LG++   +   QL PF  VN  YL++ K   P  +S+    P  H   +   +  
Sbjct: 88  VIAIVLGEVSK-YVMAQLRPFNFVNPTYLLEPK---PTDYSY----PSGHALIVSTGAVT 139

Query: 124 LVI*RPKSMFLL-VVKLFRIDWKKVFCGI 41
           L++  PK M++L +++   + + +V+ G+
Sbjct: 140 LLLTSPKWMWILGIIEAVLVSYSRVYVGV 168
tr_hit_id A9TIK0
Definition tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 42.7
E-value 0.011
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912061|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F01.
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitre...    43   0.011
tr|B8BAL4|B8BAL4_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.019
tr|B7ERY7|B7ERY7_ORYSJ cDNA clone:J033050O03, full insert sequen...    42   0.019
tr|B6TTQ6|B6TTQ6_MAIZE Actin-like protein 6A OS=Zea mays PE=2 SV=1     40   0.056
tr|B4FNB4|B4FNB4_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.056
tr|B7FM82|B7FM82_MEDTR Putative uncharacterized protein OS=Medic...    40   0.074
tr|B7FM30|B7FM30_MEDTR Putative uncharacterized protein OS=Medic...    40   0.074
tr|Q5FAM0|Q5FAM0_BRAOL Putative Acttin-related protein 4 (ARP4) ...    40   0.096
tr|A9SCW1|A9SCW1_PHYPA Actin-related protein Arp4 OS=Physcomitre...    37   0.62 
tr|A7PGQ2|A7PGQ2_VITVI Chromosome chr17 scaffold_16, whole genom...    36   1.1  
tr|Q4DPJ9|Q4DPJ9_TRYCR Dispersed gene family protein 1 (DGF-1), ...    34   4.1  
tr|Q12W09|Q12W09_METBU Putative uncharacterized protein OS=Metha...    34   4.1  
tr|Q3R789|Q3R789_XYLFA Putative uncharacterized protein OS=Xylel...    33   6.9  
tr|B7FVL5|B7FVL5_PHATR Predicted protein OS=Phaeodactylum tricor...    33   7.0  
tr|B4KPL7|B4KPL7_DROMO GI20352 OS=Drosophila mojavensis GN=GI203...    33   9.2  

>tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitrella
           patens subsp. patens GN=ARP1508 PE=3 SV=1
          Length = 451

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVVGALFA 345
           + +V SPIGGEVLTDCL  TLE KG+++   F+
Sbjct: 205 KAVVRSPIGGEVLTDCLQRTLEAKGIIIRPRFS 237


>tr|B8BAL4|B8BAL4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27738 PE=4 SV=1
          Length = 443

 Score = 42.0 bits (97), Expect = 0.019
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDC++ +LE+KGVV+
Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227


>tr|B7ERY7|B7ERY7_ORYSJ cDNA clone:J033050O03, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 443

 Score = 42.0 bits (97), Expect = 0.019
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDC++ +LE+KGVV+
Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227


>tr|B6TTQ6|B6TTQ6_MAIZE Actin-like protein 6A OS=Zea mays PE=2 SV=1
          Length = 443

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 15/28 (53%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSP+GGE LTDC++ +LE+KG+V+
Sbjct: 200 KSVSTSPVGGEFLTDCMMKSLESKGIVI 227


>tr|B4FNB4|B4FNB4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 443

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 15/28 (53%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSP+GGE LTDC++ +LE+KG+V+
Sbjct: 200 KSVSTSPVGGEFLTDCMMKSLESKGIVI 227


>tr|B7FM82|B7FM82_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 298

 Score = 40.0 bits (92), Expect = 0.074
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDCL+ +LE+KG+ +
Sbjct: 201 KAVATSPIGGEFLTDCLMKSLESKGIAM 228


>tr|B7FM30|B7FM30_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 445

 Score = 40.0 bits (92), Expect = 0.074
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + TSPIGGE LTDCL+ +LE+KG+ +
Sbjct: 201 KAVATSPIGGEFLTDCLMKSLESKGIAM 228


>tr|Q5FAM0|Q5FAM0_BRAOL Putative Acttin-related protein 4 (ARP4)
           OS=Brassica oleracea GN=B21F5.6 PE=3 SV=1
          Length = 442

 Score = 39.7 bits (91), Expect = 0.096
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + +V++PIGGE LTDCLL +LE+KG+ +
Sbjct: 198 KAVVSAPIGGEFLTDCLLKSLESKGIKI 225


>tr|A9SCW1|A9SCW1_PHYPA Actin-related protein Arp4 OS=Physcomitrella
           patens subsp. patens GN=ARP1509 PE=3 SV=1
          Length = 443

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGV 366
           + IV S IGGEVLTDCL  TLE KG+
Sbjct: 193 KAIVRSAIGGEVLTDCLQRTLEAKGI 218


>tr|A7PGQ2|A7PGQ2_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017642001
           PE=3 SV=1
          Length = 419

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 13/28 (46%), Positives = 23/28 (82%)
 Frame = -3

Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360
           + + +SPIGGE LT+C++ +LE+KG+ +
Sbjct: 175 KAVASSPIGGEFLTECMMKSLESKGISI 202