BP912062
Clone id YMU001_000012_F02
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGGTACTCCCCTCTTTCACCCTCAGCACACAACCCTCACATCAGTTCAAAAACCAACCA
CCGATTATTTAGGCTTGGCCTCGATTGCTTCGGCTTCCAAGTTCTGCTCAGACATCCTCA
ATGCTTGCCCATTGAGAAATTCCCCACAACAACTGAGTCATTGACTTCCATAACACATAC
CTTCTGATCGAATTTGACACCCTTGAGGCTTCAAAATATTTATCTTGTGCTCCAAACATA
GCATTGTGACTTCCAAAGAGAGTGCCAACCCTCAGGTCCATCCACAAAAGAAAACAAAGT
AGTGGATTTACGGCAAGATAGTCTTGATAGAGAAATTCAAAATAAATAAGTCAAAGCCCT
TGTCGAAAATTGCCTCTTTAATAGTCGAGGGTCATAACGAATCAGTTAGTTTACTTAAGT
AGTTGCACAGTAAGCAGGTGATTACCACTATTCCCGAGCAGAACCCCAACTGTACAAAAT
GCTCCTACTAAGTCACATGGCCTGTTCTTTTAGACCTGTCAAGGGTTGTGCCTCTTGACT
CTCCCTCCTCACA
■■Homology search results ■■ -
sp_hit_id Q089C0
Definition sp|Q089C0|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 59
Score (bit) 31.2
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912062|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F02.
(553 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q089C0|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh... 31 3.5

>sp|Q089C0|MEND_SHEFN
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase OS=Shewanella frigidimarina (strain
NCIMB 400) GN=menD PE=3 SV=1
Length = 579

Score = 31.2 bits (69), Expect = 3.5
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3

Query: 351 SKPLSKIASLIVEGHNESVSLLK*LHSKQVI---TTIPEQNP-NCTKCSY*VTWPVLLD 515
+KPL++ ASL + +L++ +H K VI T PE NP + + WPVL+D
Sbjct: 208 TKPLTRYASLTSAELPTTDTLMRFVHGKGVIVVGTLAPEDNPQQIVALAQKLGWPVLVD 266


tr_hit_id Q4K852
Definition tr|Q4K852|Q4K852_PSEF5 Putative uncharacterized protein OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
Align length 69
Score (bit) 38.5
E-value 0.24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912062|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F02.
(553 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4K852|Q4K852_PSEF5 Putative uncharacterized protein OS=Pseud... 39 0.24
tr|Q969B3|Q969B3_GIALA Putative uncharacterized protein ORF OS=G... 34 4.5
tr|A8BH32|A8BH32_GIALA Putative uncharacterized protein OS=Giard... 34 4.5

>tr|Q4K852|Q4K852_PSEF5 Putative uncharacterized protein
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=PFL_4493 PE=4 SV=1
Length = 413

Score = 38.5 bits (88), Expect = 0.24
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1

Query: 283 GWT*GLALSLEVTMLCLEHKINILKPQGCQIRSEGMCYGSQ*L-SCCGEFLNGQALRMSE 107
GW A +L VT+ C EH L+PQ +R+E M + S + C G+F N +AL
Sbjct: 162 GWRQSSAEALNVTLTCAEHTWVELRPQSPLLRAE-MAFESYVMRHCLGQFANRRALTGGY 220

Query: 106 QNLEAEAIE 80
AEA+E
Sbjct: 221 GERYAEAVE 229


>tr|Q969B3|Q969B3_GIALA Putative uncharacterized protein ORF
OS=Giardia lamblia GN=ORF PE=2 SV=1
Length = 252

Score = 34.3 bits (77), Expect = 4.5
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3

Query: 308 NPLLCFLLWMDLRVGTLFGSHNAMFGAQDKYFEASRVSNSIRRYVLWKSMTQLLWGISQ 132
NP+ F MD + FGS ++FG DK FE +R YV SM L G+ +
Sbjct: 52 NPMASFQRMMD-HMNDFFGSTRSIFGNMDKMFEDARHDPEGTHYVSSTSMCMLPGGVKE 109


>tr|A8BH32|A8BH32_GIALA Putative uncharacterized protein OS=Giardia
lamblia ATCC 50803 GN=GL50803_16424 PE=4 SV=1
Length = 252

Score = 34.3 bits (77), Expect = 4.5
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3

Query: 308 NPLLCFLLWMDLRVGTLFGSHNAMFGAQDKYFEASRVSNSIRRYVLWKSMTQLLWGISQ 132
NP+ F MD + FGS ++FG DK FE +R YV SM L G+ +
Sbjct: 52 NPMASFQRMMD-HMNDFFGSTRSIFGNMDKMFEDARHDPEGTHYVSSTSMCMLPGGVKE 109