BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912064|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F04.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KGU2|XYLA_THEYO Xylose isomerase OS=Thermoanaerobacter yons...    32   1.0  
sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE...    29   6.6  
sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1 ...    29   6.6  
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    29   8.8  

>sp|Q9KGU2|XYLA_THEYO Xylose isomerase OS=Thermoanaerobacter yonseii
           GN=xylA PE=3 SV=1
          Length = 438

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = +3

Query: 126 SAPLKKSVLVTANLASAKYTV--GRT-YSAVTSTST*LYTLWKEKHVANLLHVLIL*GKS 296
           +A +KK++ +T  L    Y    GR  Y  + +T T L    +  ++A  LH+ +   K 
Sbjct: 166 AAQVKKALEITKELGGQNYVFWGGREGYETLLNTDTEL----ELDNLARFLHMAVEYAKE 221

Query: 297 RGFPSQILTQHLSMMKTNHSKPTGAPRNYKV--KEGLGKSYKL 419
            GF  Q+L +      T H     A   Y    K GL K +KL
Sbjct: 222 IGFEGQLLIEPKPKEPTKHQYDFDAAHVYAFLKKYGLDKYFKL 264


>sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE=1
           SV=1
          Length = 684

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 297 RGFPSQILTQHLSMMKTNHSKPTGAP 374
           +GFP Q+L Q + + KT   +P G P
Sbjct: 156 KGFPKQVLPQPMPIKKTKPQQPAGEP 181


>sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1
           SV=2
          Length = 681

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 297 RGFPSQILTQHLSMMKTNHSKPTGAP 374
           +GFP Q+L Q + + KT   +P G P
Sbjct: 156 KGFPKQVLPQPMPIKKTKPQQPAGEP 181


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -2

Query: 306 ESLYSCLRE*EHEAG*LHAFLSREYIIMLKLK*LRCMSAQLYI*QKRGSLLQELISLKGQ 127
           ++L +   E + +A  +H+ LS  Y +    K L C   Q+ +   R  L + L+  + +
Sbjct: 611 QNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSK 670

Query: 126 NHHLI 112
           + HLI
Sbjct: 671 SRHLI 675

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912064|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F04.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******