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NBDC - LSDB Archive
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BP912066
Clone id YMU001_000012_F07
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTCCTCCTGGGCATGAGGGTGTGGATGCCACTGTGGCATCCCTGGCGCGTACTGACGT
GATGGTAGTGCAGCTGATGGAGGTGGAGGAACCAGAACAAATTCTTCTGCATTTGCTTCA
CCGTCGACCACAACATACACAGTGGGAGAGGCTGGACAGGCAGCAGACACATGAGGGCCT
TGGTCGGGGGCGCGCCTGTCGAAGTACTTGGAGCAGCATGAGTGACGGCAGGCATGGCCG
CCTGTTTCCAGATGTGGAAGAGGTGCTTGGCAAGGGCGACCACGTGGCGGGAGTGAGGGT
ACTTGCGCAGCTTGTTGACAACCTTGCCCATGCCCGTGGTG
■■Homology search results ■■ -
sp_hit_id Q2KI09
Definition sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus
Align length 33
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912066|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F07.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein ...    34   0.20 
sp|Q9AL93|PSAA_PROHO Photosystem I P700 chlorophyll a apoprotein...    34   0.26 
sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3 ...    33   0.44 
sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Dro...    32   0.98 
sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein ...    32   0.98 
sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein ...    32   0.98 
sp|Q5Z8V7|HACL2_ORYSJ Probable histone acetyltransferase HAC-lik...    32   0.98 
sp|O95948|ONEC2_HUMAN One cut domain family member 2 OS=Homo sap...    32   1.3  
sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein ...    31   1.7  
sp|A4L9P5|HIPK1_RAT Homeodomain-interacting protein kinase 1 OS=...    31   1.7  
sp|Q8TF21|ANR24_HUMAN Ankyrin repeat domain-containing protein 2...    31   1.7  
sp|P52746|ZN142_HUMAN Zinc finger protein 142 OS=Homo sapiens GN...    31   2.2  
sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein ...    31   2.2  
sp|O95402|MED26_HUMAN Mediator of RNA polymerase II transcriptio...    31   2.2  
sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypept...    31   2.2  
sp|Q55AV3|LVSD_DICDI BEACH domain-containing protein lvsD OS=Dic...    30   2.9  
sp|Q9QZR5|HIPK2_MOUSE Homeodomain-interacting protein kinase 2 O...    30   2.9  
sp|Q9WUM7|HIPK2_MESAU Homeodomain-interacting protein kinase 2 O...    30   2.9  
sp|Q9H2X6|HIPK2_HUMAN Homeodomain-interacting protein kinase 2 O...    30   2.9  
sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 ...    30   3.7  
sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein ...    30   3.7  
sp|O88904|HIPK1_MOUSE Homeodomain-interacting protein kinase 1 O...    30   3.7  
sp|Q86Z02|HIPK1_HUMAN Homeodomain-interacting protein kinase 1 O...    30   3.7  
sp|O69873|GLND_STRCO [Protein-PII] uridylyltransferase OS=Strept...    30   3.7  
sp|Q64766|YO5_ADEG1 Uncharacterized protein ORF5 OS=Fowl adenovi...    30   4.9  
sp|P09507|RDRP_TYYVF Putative RNA-directed RNA polymerase OS=Tur...    30   4.9  
sp|P09506|ORF1_TYYVF Uncharacterized protein ORF1 OS=Turnip yell...    30   4.9  
sp|Q89448|MP_SSVN Movement protein OS=Sugarcane streak virus (is...    30   4.9  
sp|Q9D341|CR058_MOUSE Uncharacterized protein C18orf58 homolog O...    30   4.9  
sp|Q8NBK3|SUMF1_HUMAN Sulfatase-modifying factor 1 OS=Homo sapie...    29   6.4  

>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3
           OS=Bos taurus GN=TCEA3 PE=2 SV=1
          Length = 349

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -2

Query: 340 TTGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQ 242
           TT +G  VN +RK+  ++ VVALAK L   WKQ
Sbjct: 45  TTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQ 77


>sp|Q9AL93|PSAA_PROHO Photosystem I P700 chlorophyll a apoprotein A1
           (Fragment) OS=Prochlorothrix hollandica GN=psaA PE=3
           SV=2
          Length = 699

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = -2

Query: 286 HVVALAKHLFHIWKQAAMPAVTHAAP--STSTGAPPTKALMCLLPVQPLPLCMLWSTVKQ 113
           H + +   LFH+W+      +TH++   +T+ GA     LM         L   W    +
Sbjct: 81  HGIQITSGLFHLWRACG---ITHSSELYATAIGALVMAGLM---------LFAGWFHYHK 128

Query: 112 MQKNLFWFLHLHQLHYHHVSTRQGCHS 32
               L WF ++  +  HH+S   GC S
Sbjct: 129 AAPKLEWFQNVESMLNHHLSVLLGCGS 155


>sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3
            OS=Rattus norvegicus GN=Grin2c PE=1 SV=1
          Length = 1237

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 311  AAQVPSLPPRGRPCQAPLPHLETGGHACRHSCCSKYFDRRAPDQGPHVSAA 159
            A + P  P R   C  PLP  +    +CRH+  +++   R   QGPHVSA+
Sbjct: 964  ARRAPQPPARPATCGPPLP--DVSRPSCRHASDARW-PVRVGHQGPHVSAS 1011


>sp|P20232|TFS2_DROME Transcription elongation factor S-II
           OS=Drosophila melanogaster GN=TfIIS PE=2 SV=1
          Length = 313

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 337 TGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQ-AAMPAVT 221
           T +G  VN+LRK      V+ALAK L   WK+  A PA T
Sbjct: 47  TRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPT 86


>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3
           OS=Mus musculus GN=Tcea3 PE=1 SV=3
          Length = 347

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 340 TTGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQAA-MPAVTHAAPSTSTGAPPTKALMC 167
           TT +G  VN +RK+   + VV+LAK L   WK+    P  T         A   K L C
Sbjct: 45  TTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGC 103


>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2
           OS=Bos taurus GN=TCEA2 PE=2 SV=1
          Length = 300

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 340 TTGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQAAMPAVTHAAPSTSTGAPPTKA 176
           +T +G  VN LRK      VV LAK L   WK+    +   A      G+ PT +
Sbjct: 46  STRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDASDAKARERRRGGSLPTSS 100


>sp|Q5Z8V7|HACL2_ORYSJ Probable histone acetyltransferase HAC-like 2
           OS=Oryza sativa subsp. japonica GN=Os06g0704800 PE=3
           SV=2
          Length = 1439

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 23  VDATVASLARTDVMVVQLMEVEEPEQILLHLLHRRPQHTQWERLDR 160
           VD T++   +  V  V LME+  PEQI  H+   R    QW + D+
Sbjct: 856 VDVTISKTGKPKVKGVSLMELFTPEQIHEHINSLRQWIGQWVQCDK 901


>sp|O95948|ONEC2_HUMAN One cut domain family member 2 OS=Homo
           sapiens GN=ONECUT2 PE=2 SV=1
          Length = 485

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -2

Query: 220 HAAPSTSTGAPP----TKALMCLLPVQPLPLCMLWSTVKQMQKNLFWFLHLHQLHYHHVS 53
           HA   +   +PP    +     L P+QPLP     STV     +     H H  H+HH  
Sbjct: 110 HAMSMSCDSSPPGMGMSNTYTTLTPLQPLPPI---STVSDKFHHPHPHHHPHHHHHHHHQ 166

Query: 52  TRQGCHSGIHTLM 14
              G  SG  TLM
Sbjct: 167 RLSGNVSGSFTLM 179


>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2
           OS=Homo sapiens GN=TCEA2 PE=1 SV=1
          Length = 299

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 340 TTGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQ 242
           +T +G  VN LRK      V+ALAK L   WK+
Sbjct: 46  STRVGMSVNALRKQSSDEEVIALAKSLIKSWKK 78


>sp|A4L9P5|HIPK1_RAT Homeodomain-interacting protein kinase 1
           OS=Rattus norvegicus GN=Hipk1 PE=2 SV=1
          Length = 1211

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
 Frame = -2

Query: 310 LRKYPHSRHVVALAK---------HLFHIWKQAAMPAVTHAAPSTST 197
           L  +PHS HV +  +         H++    Q   P  TH APSTST
Sbjct: 523 LLDFPHSNHVKSCFQNMEICKRRVHMYDTVSQIKSPFTTHVAPSTST 569
tr_hit_id B7YIN0
Definition tr|B7YIN0|B7YIN0_VARPD Indolepyruvate ferredoxin oxidoreductase OS=Variovorax paradoxus S110
Align length 88
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912066|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_F07.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YIN0|B7YIN0_VARPD Indolepyruvate ferredoxin oxidoreductase ...    38   0.29 
tr|Q3JL22|Q3JL22_BURP1 200 kDa antigen p200, putative OS=Burkhol...    36   0.84 
tr|A4HLJ3|A4HLJ3_LEIBR Putative uncharacterized protein OS=Leish...    36   1.1  
tr|A4HLJ1|A4HLJ1_LEIBR Putative uncharacterized protein OS=Leish...    36   1.1  
tr|Q29P72|Q29P72_DROPS GA17632 OS=Drosophila pseudoobscura pseud...    35   1.4  
tr|B4GK82|B4GK82_DROPE GL25727 OS=Drosophila persimilis GN=GL257...    35   1.4  
tr|A8JCD9|A8JCD9_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   1.9  
tr|Q29LE7|Q29LE7_DROPS GA16375 OS=Drosophila pseudoobscura pseud...    35   1.9  
tr|B4P0Y3|B4P0Y3_DROYA GE19061 OS=Drosophila yakuba GN=GE19061 P...    35   1.9  
tr|B3NB52|B3NB52_DROER GG23207 OS=Drosophila erecta GN=GG23207 P...    35   1.9  
tr|Q09DT6|Q09DT6_STIAU Amidohydrolase family protein OS=Stigmate...    34   3.2  
tr|Q5C3N7|Q5C3N7_SCHJA SJCHGC09202 protein (Fragment) OS=Schisto...    34   3.2  
tr|B4KLB6|B4KLB6_DROMO GI17330 OS=Drosophila mojavensis GN=GI173...    34   3.2  
tr|B1MIM3|B1MIM3_MYCA9 NADPH-ferredoxin reductase FprA OS=Mycoba...    34   4.2  
tr|Q9NHP6|Q9NHP6_DROVI Transcription elongation factor TFIIS OS=...    33   5.5  
tr|B4Q5Z6|B4Q5Z6_DROSI GD21971 OS=Drosophila simulans GN=GD21971...    33   5.5  
tr|B4HXM1|B4HXM1_DROSE GM14545 OS=Drosophila sechellia GN=GM1454...    33   5.5  
tr|Q7SA07|Q7SA07_NEUCR Predicted protein OS=Neurospora crassa GN...    33   5.5  
tr|Q62644|Q62644_RAT N-methyl-D-aspartate receptor NMDAR2C subun...    33   7.1  
tr|Q1B9L5|Q1B9L5_MYCSS Putative uncharacterized protein OS=Mycob...    33   7.1  
tr|A3PZ08|A3PZ08_MYCSJ Putative uncharacterized protein OS=Mycob...    33   7.1  
tr|A1UFE8|A1UFE8_MYCSK Putative uncharacterized protein OS=Mycob...    33   7.1  
tr|Q1N9B2|Q1N9B2_9SPHN Glycosyl transferase, group 1 family prot...    33   7.1  
tr|A9DSM3|A9DSM3_9RHOB Putative uncharacterized protein OS=Ocean...    33   7.1  
tr|B3MMA2|B3MMA2_DROAN GF15561 OS=Drosophila ananassae GN=GF1556...    33   7.1  
tr|Q05QR3|Q05QR3_9SYNE Putative uncharacterized protein OS=Synec...    33   9.3  
tr|B4GQ42|B4GQ42_DROPE GL15716 OS=Drosophila persimilis GN=GL157...    33   9.3  

>tr|B7YIN0|B7YIN0_VARPD Indolepyruvate ferredoxin oxidoreductase
           OS=Variovorax paradoxus S110 GN=VaparDRAFT_1025 PE=4
           SV=1
          Length = 752

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
 Frame = -2

Query: 241 AAMPAVTHAAPSTSTGAP-----PTKALMCLLPVQPLPLCM------LWSTVKQMQKNLF 95
           AA  A+  A  S +T AP     P  AL  LLP +P  LC+      ++S++K +++   
Sbjct: 397 AASEAIATATASATTLAPSAPPAPATALAALLPPRPPGLCVGCPERPIFSSLKLVER--- 453

Query: 94  WFLHLHQLHYHHVSTRQGCHSGIHTLMP 11
                 +L  HHVS   GCH  + ++MP
Sbjct: 454 ------ELGMHHVSADIGCH--LFSIMP 473


>tr|Q3JL22|Q3JL22_BURP1 200 kDa antigen p200, putative
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_A0574 PE=4 SV=1
          Length = 895

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 23/66 (34%), Positives = 27/66 (40%)
 Frame = -2

Query: 232 PAVTHAAPSTSTGAPPTKALMCLLPVQPLPLCMLWSTVKQMQKNLFWFLHLHQLHYHHVS 53
           PA   A PS S  + P  A     P  P P C L S      ++L WFL  H      V 
Sbjct: 143 PAAPDAGPSASRRSGPRPAAP---PPFPAPRCRLCSRRVASCRHLVWFLQSHGCRRVAVP 199

Query: 52  TRQGCH 35
           +  GCH
Sbjct: 200 SNDGCH 205


>tr|A4HLJ3|A4HLJ3_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM33_V2.1590 PE=4 SV=1
          Length = 249

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = -1

Query: 290 PPRGRPCQAPLPHLETGGHACRHSCCSKYFDRRAPDQGPHVSAACPASPT 141
           PPR R C A   H +T     RH   +K+     P +GPH  AA PA+PT
Sbjct: 84  PPRRRVCWADEGHPDTARGLVRH--ITKF---HTPPRGPHYDAAGPANPT 128


>tr|A4HLJ1|A4HLJ1_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM33_V2.1570 PE=4 SV=1
          Length = 249

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = -1

Query: 290 PPRGRPCQAPLPHLETGGHACRHSCCSKYFDRRAPDQGPHVSAACPASPT 141
           PPR R C A   H +T     RH   +K+     P +GPH  AA PA+PT
Sbjct: 84  PPRRRVCWADEGHPDTARGLVRH--ITKF---HTPPRGPHYDAAGPANPT 128


>tr|Q29P72|Q29P72_DROPS GA17632 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA17632 PE=4 SV=1
          Length = 313

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 337 TGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQ-AAMPAVTHAAPSTSTG 194
           T +G  VN+LRK      V+ALAK L   WK+  A PA T    ST+ G
Sbjct: 49  TRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSTAAG 97


>tr|B4GK82|B4GK82_DROPE GL25727 OS=Drosophila persimilis GN=GL25727
           PE=4 SV=1
          Length = 313

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 337 TGMGKVVNKLRKYPHSRHVVALAKHLFHIWKQ-AAMPAVTHAAPSTSTG 194
           T +G  VN+LRK      V+ALAK L   WK+  A PA T    ST+ G
Sbjct: 49  TRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSTAAG 97


>tr|A8JCD9|A8JCD9_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_178198 PE=4 SV=1
          Length = 2252

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = -1

Query: 311 AAQVPSLPPRGRPCQAPLPHLETGGHACRHSCCSKYFDRRAPDQGPHVSAACPASPTVYV 132
           AAQ P+ PP   P  AP P L  G  A  +     Y     P  GP +SA+ P +   YV
Sbjct: 366 AAQPPAQPPPPAP-SAPTPFLTNGSTAGTYIYGGAYVATWQPAAGPRISASLPPATAGYV 424


>tr|Q29LE7|Q29LE7_DROPS GA16375 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA16375 PE=4 SV=2
          Length = 387

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -2

Query: 316 NKLRKYPHSRHVVALAKHLFHIWKQAAMPAV-THAAPSTSTGAPPTKAL 173
           +K RK PH RH+ A  KH+    ++  MPAV T +  +TST + P++A+
Sbjct: 28  HKHRKLPHGRHLWASRKHM---RRKFGMPAVTTQSTTNTSTTSAPSEAI 73


>tr|B4P0Y3|B4P0Y3_DROYA GE19061 OS=Drosophila yakuba GN=GE19061 PE=4
            SV=1
          Length = 1695

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
 Frame = -2

Query: 310  LRKYPHSRHVVALAKHLFH----IWKQAAMPAVTHA-----APSTSTGAPPTKALMCLLP 158
            L++ PH R V+   +   H    I ++  MPA+  A     AP ++ G PPT AL+   P
Sbjct: 1328 LQQQPHVRSVLDQQQQQQHHPSIIQQKITMPAIAEATIPKIAPVSAPGTPPTNALLAKRP 1387

Query: 157  VQP 149
            V P
Sbjct: 1388 VPP 1390


>tr|B3NB52|B3NB52_DROER GG23207 OS=Drosophila erecta GN=GG23207 PE=4
            SV=1
          Length = 1696

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -2

Query: 310  LRKYPHSRHVVALAKHLFHIWKQA-AMPAVTHA-----APSTSTGAPPTKALMCLLPVQP 149
            L++  H R V+   +H   I +Q   MPA+  A     AP  + G PPT AL+   P+QP
Sbjct: 1332 LQQQQHVRTVLDQQQHHPSIIQQKITMPAIAEANKQKIAPVPAPGTPPTNALLAKKPMQP 1391

Query: 148  LP 143
             P
Sbjct: 1392 QP 1393