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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912076
Clone id YMU001_000012_G07
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGGAAACCAAGGCATATAACATTCCCACTATAGGCAAACACAAACAGCTGATACCAATT
TCTATGAAGACAATAATCTTCAGAGAAAAATGTCAAAGCCGCCGAACAAAAGACTCTCCA
AGGTGATGTGTGTGCATGTATATCTTACATGCGAATCCGTGAAATCTGAATGACATAAGG
AAATGGAACCTTACCCTTTACTGATGGAGAAGGCTAAGAGTAAATAGTTTGTCAGCCTTT
CTATGTTTCCCATAGAAAGTTCCCAATGGCAAGCTCGCGCATGTCAGCGAGAGTGGAAGG
GATAGGCAGACCATACTCTTCCAGCAAGCGAGCCAGCCTCCACTCCTCCATGGCCTCATA
GTCCGCACGTGAGAATCGAGGATAGTGCAGGGGCATCTGGAAAACGGAAGGCACGGAAGC
GCTGGTCACTCCAAAGGAGGAAGAGTCGAAGGGAAGCTTCTGGACAGACTGCTCCAGGGA
GGAGACGCGCTCCAGGAGCTCGCTATAGCCAGAACTT
■■Homology search results ■■ -
sp_hit_id Q91ZM2
Definition sp|Q91ZM2|SH2B1_MOUSE SH2B adapter protein 1 OS=Mus musculus
Align length 91
Score (bit) 35.0
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912076|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_G07.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91ZM2|SH2B1_MOUSE SH2B adapter protein 1 OS=Mus musculus GN=...    35   0.21 
sp|Q62985|SH2B1_RAT SH2B adapter protein 1 OS=Rattus norvegicus ...    33   0.60 
sp|O96668|DTFA_DICDI Defective in tip formation protein A OS=Dic...    31   4.0  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    30   5.1  
sp|Q9R1S7|MRP6_MOUSE Multidrug resistance-associated protein 6 O...    30   5.2  
sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos ta...    30   6.7  
sp|P42271|TBG2_DROME Tubulin gamma-2 chain OS=Drosophila melanog...    30   6.8  
sp|O84579|MUTL_CHLTR DNA mismatch repair protein mutL OS=Chlamyd...    30   6.8  
sp|Q3KLC2|MUTL_CHLTA DNA mismatch repair protein mutL OS=Chlamyd...    30   6.8  
sp|Q9NQ33|ASCL3_HUMAN Achaete-scute homolog 3 OS=Homo sapiens GN...    30   6.8  
sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase rnf12-A OS=Xen...    30   8.7  

>sp|Q91ZM2|SH2B1_MOUSE SH2B adapter protein 1 OS=Mus musculus
           GN=Sh2b1 PE=1 SV=2
          Length = 756

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 23/91 (25%), Positives = 41/91 (45%)
 Frame = +3

Query: 192 YPLLMEKAKSK*FVSLSMFPIESSQWQARACQREWKG*ADHTLPASEPASTPPWPHSPHV 371
           +P+ +E   S   V +S  P  S + Q R+  R+           ++P+  PPW   PH 
Sbjct: 607 HPIPLESGGSSDVVLVSYVP--SQRQQERSTSRD----------PAQPSEPPPWTDPPHP 654

Query: 372 RIEDSAGASGKRKARKRWSLQRRKSRREASG 464
             E+++GA     A    + +R++  +  SG
Sbjct: 655 GAEEASGAPEVAAATAAAAKERQEKEKAGSG 685


>sp|Q62985|SH2B1_RAT SH2B adapter protein 1 OS=Rattus norvegicus
           GN=Sh2b1 PE=1 SV=1
          Length = 756

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +3

Query: 192 YPLLMEKAKSK*FVSLSMFPIESSQWQARACQREWKG*ADHTLPASEPASTPPWPHSPHV 371
           +P+ +E   S   V +S  P  S + Q R+  R+           ++P+  PPW   PH 
Sbjct: 607 HPIPLESGGSSDVVLVSYVP--SQRQQERSTSRD----------PTQPSEPPPWTDPPHP 654

Query: 372 RIEDSAGASGKRKARKRWSLQRRKSRREASG 464
             E+++GA     A    + +R++  +   G
Sbjct: 655 GAEEASGAPEVAAATAAAAKERQEKEKAGGG 685


>sp|O96668|DTFA_DICDI Defective in tip formation protein A
            OS=Dictyostelium discoideum GN=dtfA PE=2 SV=2
          Length = 1402

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 379  RIVQGHLENGRHGSAGHSKGGRVEGKLLDRLL 474
            +I    +ENG     G+  GG V G +LDRLL
Sbjct: 963  KIYNSSIENGNSNGNGNGNGGTVIGGILDRLL 994


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
            OS=Homo sapiens GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +3

Query: 249  PIESSQWQARACQREWKG*ADHTLPASEPASTPPWPHSPHVRIEDSAGASGKRKARKRWS 428
            P    + ++R     WK       PA+   S    P     R         +R++R R S
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTS 1905

Query: 429  LQRRKSRREAS 461
            + RR+SR  AS
Sbjct: 1906 VTRRRSRSRAS 1916


>sp|Q9R1S7|MRP6_MOUSE Multidrug resistance-associated protein 6
           OS=Mus musculus GN=Abcc6 PE=1 SV=1
          Length = 1498

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +1

Query: 211 RLRVNSLSAFLCFP*KVPNGKLAHVS-ESGRDR-----QTILFQQASQPPLLHGL 357
           R+  + L+AFLC     PNG +A  S  S +DR      T  + Q S PP LHG+
Sbjct: 594 RVSFDRLAAFLCLEEVDPNGMIASNSRRSSKDRISVHNGTFAWSQES-PPCLHGI 647


>sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos
           taurus GN=ARHGAP10 PE=2 SV=1
          Length = 785

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 270 QARACQREWKG*ADHTLPASEPASTPPWPHSPHVRIEDSAGASGK-------RKAR 416
           QAR+   +W      T P+  PA TPP P  P V +   A  + K       RKAR
Sbjct: 678 QARSSAVQWLNPQSPTTPSCSPAVTPPSPKLPPVPLSLPATVADKPPESIISRKAR 733


>sp|P42271|TBG2_DROME Tubulin gamma-2 chain OS=Drosophila
           melanogaster GN=gammaTub37C PE=1 SV=3
          Length = 457

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
 Frame = +1

Query: 262 PNGKLAHVSESGRDRQTILFQQASQPPLLHGLIVRT*ESRIVQGHLEN------------ 405
           P+G L   +  G+DR+ + F QA     +   ++   E R++   + +            
Sbjct: 33  PDGVLEDFATDGQDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVF 92

Query: 406 --------GRHGSAGHSKGGRVEGK---LLDRLLQGGDALQELAIART 516
                   G + ++G S+G +V+ +   +LDR   G D+L+   +  +
Sbjct: 93  LSKHGGGAGNNWASGFSQGEKVQEEVFDILDREADGSDSLEGFVLCHS 140


>sp|O84579|MUTL_CHLTR DNA mismatch repair protein mutL OS=Chlamydia
           trachomatis GN=mutL PE=3 SV=1
          Length = 576

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -2

Query: 498 LLERVSSLEQSVQKLPFDS---SSFGVTSASV-PSVFQMPLHYPRFSRADY 358
           LL R  SLE++V K+P +     + G++  S+ P++   PL  P FS+  Y
Sbjct: 329 LLRRSPSLEETVLKVPTEKIPIENEGISVPSIRPAIVSAPLSCPTFSQQPY 379


>sp|Q3KLC2|MUTL_CHLTA DNA mismatch repair protein mutL OS=Chlamydia
           trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mutL
           PE=3 SV=1
          Length = 576

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -2

Query: 498 LLERVSSLEQSVQKLPFDS---SSFGVTSASV-PSVFQMPLHYPRFSRADY 358
           LL R  SLE++V K+P +     + G++  S+ P++   PL  P FS+  Y
Sbjct: 329 LLRRSPSLEETVLKVPTEKIPIENEGISVPSIRPAIVSAPLSCPTFSQQPY 379


>sp|Q9NQ33|ASCL3_HUMAN Achaete-scute homolog 3 OS=Homo sapiens
           GN=ASCL3 PE=2 SV=2
          Length = 180

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 483 SSLEQSVQKLPFDSSSFGVTSASVPSVFQMPLHYPRFSRADY 358
           S   + + +LPF S S  + + S P  F  P+ YP +   +Y
Sbjct: 46  SPYSEELPRLPFPSDSLILGNYSEPCPFSFPMPYPNYRGCEY 87
tr_hit_id B6SYT2
Definition tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 53
Score (bit) 79.7
E-value 8.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912076|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_G07.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m...    80   8e-14
tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00...    74   4e-12
tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs...    74   4e-12
tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08...    74   6e-12
tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza...    74   6e-12
tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi...    72   2e-11
tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen...    72   2e-11
tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m...    71   3e-11
tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    71   4e-11
tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m...    71   4e-11
tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m...    71   4e-11
tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2...    70   5e-11
tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who...    70   5e-11
tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom...    70   5e-11
tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom...    70   6e-11
tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562...    70   8e-11
tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul...    70   8e-11
tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m...    69   2e-10
tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m...    68   2e-10
tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom...    68   2e-10
tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m...    67   5e-10
tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=...    67   7e-10
tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556...    67   7e-10
tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2...    64   3e-09
tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi...    61   3e-08
tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|A3BC93|A3BC93_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04

>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 87

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 36/53 (67%), Positives = 39/53 (73%)
 Frame = -2

Query: 408 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 250
           S FQMPLHYPR SR DYEAM EW+L RLL EYGLP+  T+   R  AIG FLW
Sbjct: 28  SYFQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFAIGTFLW 80


>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 99

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = -2

Query: 408 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 250
           S F+MPLHYPR+ +ADYEAM EWR+  LL EYGLP+   L   RE A+G FLW
Sbjct: 43  SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFAMGAFLW 95


>tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein
           OSJNBa0009J19.26 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0009J19.26 PE=4 SV=1
          Length = 82

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = -2

Query: 444 SSSFGVTSASVPSVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAI 265
           SS+FG         FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+
Sbjct: 16  SSAFG--GGCCGGGFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAM 73

Query: 264 GNFLW 250
           G FLW
Sbjct: 74  GAFLW 78


>tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0523300 PE=4 SV=1
          Length = 98

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = -2

Query: 444 SSSFGVTSASVPSVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAI 265
           SS+FG         FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+
Sbjct: 32  SSAFG--GGCCGGGFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAM 89

Query: 264 GNFLW 250
           G FLW
Sbjct: 90  GAFLW 94


>tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23191 PE=4 SV=1
          Length = 82

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = -2

Query: 444 SSSFGVTSASVPSVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAI 265
           SS+FG         FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+
Sbjct: 16  SSAFG--GGCCGGGFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAM 73

Query: 264 GNFLW 250
           G FLW
Sbjct: 74  GAFLW 78


>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38
           (Putative uncharacterized protein) (Putative
           uncharacterized protein P0443E05.1) OS=Oryza sativa
           subsp. japonica GN=P0483F08.38 PE=4 SV=1
          Length = 79

 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = -2

Query: 402 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 250
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  AIG FLW
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70


>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00937 PE=4 SV=1
          Length = 79

 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = -2

Query: 402 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 250
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  AIG FLW
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70


>tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 101

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 41/55 (74%)
 Frame = -2

Query: 408 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLWET 244
           S FQ+PLHYP+++++DYE M EW+L RLL EYGLP+     + R+ AIG FLW +
Sbjct: 43  SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSS 97


>tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 102

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 41/55 (74%)
 Frame = -2

Query: 408 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLWET 244
           S FQ+PLHYP+++++DYE M EW+L RLL EYGLP+     + R+ AIG FLW +
Sbjct: 43  SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSS 97


>tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06636 PE=4 SV=1
          Length = 96

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = -2

Query: 408 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 250
           S F+MPLHYPR+ +A+YEAM EWR+  LL EYGLP+   L   R  A+G FLW
Sbjct: 40  SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGNLDAKRRFAMGAFLW 92