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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912078
Clone id YMU001_000012_G09
Library
Length 402
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAATGCATCATTAAGCAATCTTGGACCTACCCAATATCAGGCATCTGCTAGCAACATCGC
ACAGCATCTTGATGTGCAACATTGGTACTCTCAGATGCACTCTGGTCTCACGGGCCGCGA
GAAGTCTTCCGGATGCTCTTGCTTCCAGTGACAAGGGTGCTTTCTCAAGTGAGGATGCCT
TGAGGGAACTACTTGAAGAAATCAAGAAGACCGTCTGTGACTGGTCATTCAAACATAAGA
CTATCGCGCAAGACATGCCCTCAAGAAGCGCAACACATGAAGGGGTTTCAGCCTCTTCTG
GCCTTTGCCTACCAAATGGTGCACCTTGTCCAATGGGCTCTGAGAGAGAACAGAGCCCTG
TTATGTGCACGAGGTCCTAAGGAGGCAACATATCAGGAGTGG
■■Homology search results ■■ -
sp_hit_id Q255T1
Definition sp|Q255T1|MUTS_CHLFF DNA mismatch repair protein mutS OS=Chlamydophila felis (strain Fe/C-56)
Align length 78
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912078|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_G09.
         (402 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q255T1|MUTS_CHLFF DNA mismatch repair protein mutS OS=Chlamyd...    34   0.20 
sp|P45891|ACTY_DROME Actin-like protein 53D OS=Drosophila melano...    33   0.44 
sp|Q9UDV7|ZN282_HUMAN Zinc finger protein 282 OS=Homo sapiens GN...    32   1.3  
sp|O29379|ARLY_ARCFU Argininosuccinate lyase OS=Archaeoglobus fu...    31   1.7  
sp|P20904|ACT_VOLCA Actin OS=Volvox carteri PE=3 SV=1                  31   1.7  
sp|Q5L554|MUTS_CHLAB DNA mismatch repair protein mutS OS=Chlamyd...    31   2.2  
sp|P33294|SIR2_KLULA NAD-dependent histone deacetylase SIR2 OS=K...    30   2.8  
sp|Q9JMH9|MY18A_MOUSE Myosin-XVIIIa OS=Mus musculus GN=Myo18a PE...    30   2.8  
sp|Q6UXB8|PI16_HUMAN Peptidase inhibitor 16 OS=Homo sapiens GN=P...    30   3.7  
sp|Q8TCU4|ALMS1_HUMAN Alstrom syndrome protein 1 OS=Homo sapiens...    30   3.7  
sp|Q54VY0|Y6358_DICDI Putative uncharacterized protein DDB_G0280...    30   3.7  
sp|P90689|ACT_BRUMA Actin OS=Brugia malayi PE=1 SV=1                   30   4.9  
sp|Q7MG94|MALT_VIBVY HTH-type transcriptional regulator malT OS=...    29   6.3  
sp|Q8D4P3|MALT_VIBVU HTH-type transcriptional regulator malT OS=...    29   6.3  
sp|Q821V6|MUTS_CHLCV DNA mismatch repair protein mutS OS=Chlamyd...    29   6.3  
sp|Q96482|ACT1_SOLLC Actin-41 (Fragment) OS=Solanum lycopersicum...    29   6.3  
sp|Q9KNF3|MALT_VIBCH HTH-type transcriptional regulator malT OS=...    29   8.2  
sp|Q9Z6W5|MUTS_CHLPN DNA mismatch repair protein mutS OS=Chlamyd...    29   8.3  
sp|Q8IU85|KCC1D_HUMAN Calcium/calmodulin-dependent protein kinas...    29   8.3  
sp|Q6PDJ6|FBX42_MOUSE F-box only protein 42 OS=Mus musculus GN=F...    29   8.3  
sp|Q24740|CDC37_DROVI Hsp90 co-chaperone Cdc37 OS=Drosophila vir...    29   8.3  

>sp|Q255T1|MUTS_CHLFF DNA mismatch repair protein mutS
           OS=Chlamydophila felis (strain Fe/C-56) GN=mutS PE=3
           SV=1
          Length = 826

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 102 LVSRAARSLPDALASSDKGAFSSEDALRELLEEIKKTVC---DWSFKHKTIAQDMPSRSA 272
           L+    R  P  + S DK      D + +LL+ +K T+    DW+F+H+   Q +    +
Sbjct: 160 LIDEICRLAPTEILSCDKFYKKHSDVIEQLLQHLKLTLSTYSDWAFEHQFATQKL----S 215

Query: 273 THEGVSASSGLCLPNGAP 326
            H  VS+  G  L    P
Sbjct: 216 AHFKVSSLDGFGLKGLVP 233


>sp|P45891|ACTY_DROME Actin-like protein 53D OS=Drosophila
           melanogaster GN=Arp53D PE=2 SV=2
          Length = 376

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 96  CTLVSRAARSLPDALASS--DKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRS 269
           C  V  A R L D L     ++G      A RE++ EIK+ +C  S  +     D+  + 
Sbjct: 180 CVRVDLAGRDLTDYLCKLLLERGVTMGTSAEREIVREIKEKLCYVSMNYAK-EMDLHGKV 238

Query: 270 ATHEGVSASSGLCLPNGAPCPMGSEREQSP 359
            T+E         LP+G    +G ER + P
Sbjct: 239 ETYE---------LPDGQKIVLGCERFRCP 259


>sp|Q9UDV7|ZN282_HUMAN Zinc finger protein 282 OS=Homo sapiens
           GN=ZNF282 PE=1 SV=3
          Length = 671

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 165 RKHPCHWKQEHPEDFSRPVRPE 100
           R+ PC W+Q HPE+   P+ PE
Sbjct: 255 REEPCVWEQRHPEEREIPMDPE 276


>sp|O29379|ARLY_ARCFU Argininosuccinate lyase OS=Archaeoglobus
           fulgidus GN=argH PE=3 SV=1
          Length = 483

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 153 KGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRSATHEGVSASSGLCLPNGAPCP 332
           KG + SE+  +E++  +KK       K     +D P     HE + A      P+GA   
Sbjct: 45  KGGYLSEEEAKEIILALKKV------KDSGFREDWPYEDV-HEAIEAEVTKITPHGAKMH 97

Query: 333 MGSEREQSPVMCTR 374
            G  R      C R
Sbjct: 98  TGRSRNDEVATCLR 111


>sp|P20904|ACT_VOLCA Actin OS=Volvox carteri PE=3 SV=1
          Length = 377

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +3

Query: 114 AARSLPDALAS--SDKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRSATHEGV 287
           A R L D L     ++G   +  A RE++ +IK+ +C        +A D     AT    
Sbjct: 183 AGRDLTDYLMKILMERGYSFTTTAEREIVRDIKEKLC-------YVALDFEQEMATAASS 235

Query: 288 SASSGLC-LPNGAPCPMGSEREQSP 359
           SA      LP+G P  +G+ER + P
Sbjct: 236 SALEKTYELPDGQPITIGNERFRCP 260


>sp|Q5L554|MUTS_CHLAB DNA mismatch repair protein mutS
           OS=Chlamydophila abortus GN=mutS PE=3 SV=1
          Length = 826

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 102 LVSRAARSLPDALASSDKGAFSSEDALRELLEEIKKTV---CDWSFKHKTIAQDMPSRSA 272
           LV    R  P  + S DK      D + ++ + +K T+    DW+F+H+   Q +    +
Sbjct: 160 LVDEICRLAPTEILSCDKFYKKHADIIEQIQQHLKLTLSTYADWAFEHQFATQKL----S 215

Query: 273 THEGVSASSGLCLPNGAP 326
            H  VS+  G  L    P
Sbjct: 216 LHFHVSSLDGFGLKGLVP 233


>sp|P33294|SIR2_KLULA NAD-dependent histone deacetylase SIR2
           OS=Kluyveromyces lactis GN=SIR2 PE=3 SV=2
          Length = 670

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 132 DALASSDKGAFSSEDALRELLEEIKKTVCDW---SFKHKTIAQDMPSRSATHEGVSASS 299
           D  A +D  A + EDA +++LEE K    D     ++ K ++ +    ++ H G+++S+
Sbjct: 55  DVDADADADADAEEDAQKDILEETKADELDEVVDEYEEKEVSSNFNGTASDHVGITSSN 113


>sp|Q9JMH9|MY18A_MOUSE Myosin-XVIIIa OS=Mus musculus GN=Myo18a PE=1
            SV=2
          Length = 2050

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 189  LLEEIKKTVCDWSFKHKTIAQDMPS--RSATHEGVSASSGLCLPNGAPCPMG 338
            L++ IK++   +      +A+  P   RSA+   VS+SS L LP G PC  G
Sbjct: 1028 LIDTIKRSKMHFVHCFLPVAEGWPGEPRSASSRRVSSSSELDLPPGDPCEAG 1079


>sp|Q6UXB8|PI16_HUMAN Peptidase inhibitor 16 OS=Homo sapiens GN=PI16
           PE=1 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = +1

Query: 127 FRMLLLPVTRVLSQVRMP*GNYLKKSRRPSVTGHSNIRLSRKTCPQEAQHMKGFQPLLAF 306
           F MLLLP+  +L     P G    + +R  V  H+  R        +  HM+  + L AF
Sbjct: 7   FLMLLLPLLLLLVATTGPVGALTDEEKRLMVELHNLYRAQVSPTASDMLHMRWDEELAAF 66

Query: 307 AYQMVHLVQWALRENR 354
           A        W   + R
Sbjct: 67  AKAYARQCVWGHNKER 82


>sp|Q8TCU4|ALMS1_HUMAN Alstrom syndrome protein 1 OS=Homo sapiens
            GN=ALMS1 PE=1 SV=2
          Length = 4167

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 240  SYV*MTSHRRSS*FLQVVPSRHPHLRKHPCHWKQEHPEDFSR 115
            S++ + SH +     + + S HP L +HPC ++   P + +R
Sbjct: 2574 SHIIIESHEKGC--FRTLTSEHPQLDRHPCAFRSAGPSEMTR 2613
tr_hit_id B1DDX7
Definition tr|B1DDX7|B1DDX7_9BACL DNA polymerase III, alpha subunit OS=Paenibacillus sp. JDR-2
Align length 81
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912078|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_G09.
         (402 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1DDX7|B1DDX7_9BACL DNA polymerase III, alpha subunit OS=Paen...    34   3.1  
tr|A9FXY3|A9FXY3_9RHOB Universal stress protein family protein O...    34   4.1  
tr|A5K3P6|A5K3P6_PLAVI Putative uncharacterized protein OS=Plasm...    34   4.1  
tr|Q4P3X9|Q4P3X9_USTMA Putative uncharacterized protein OS=Ustil...    33   5.4  
tr|Q7ZUK7|Q7ZUK7_DANRE WW domain containing adaptor with coiled-...    33   7.0  
tr|Q6PUS1|Q6PUS1_DANRE WW domain containing adaptor with coiled-...    33   7.0  
tr|B5I0D6|B5I0D6_9ACTO Putative uncharacterized protein OS=Strep...    33   7.0  
tr|Q3ZAJ5|Q3ZAJ5_DROME AT26678p (Fragment) OS=Drosophila melanog...    33   7.0  
tr|Q28WQ3|Q28WQ3_DROPS GA18861 OS=Drosophila pseudoobscura pseud...    33   7.0  
tr|B6KSG0|B6KSG0_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.0  
tr|B4P5V9|B4P5V9_DROYA GE11816 OS=Drosophila yakuba GN=GE11816 P...    33   7.0  
tr|A2FBG9|A2FBG9_TRIVA Putative uncharacterized protein OS=Trich...    33   7.0  
tr|Q4X1L9|Q4X1L9_ASPFU Universal stress protein family domain pr...    33   7.0  
tr|B0XRZ4|B0XRZ4_ASPFC Universal stress protein family domain pr...    33   7.0  
tr|A1W8L1|A1W8L1_ACISJ Putative uncharacterized protein OS=Acido...    33   9.1  
tr|B3RL22|B3RL22_TRIAD Putative uncharacterized protein (Fragmen...    33   9.1  
tr|A9J0A7|A9J0A7_9EUKA Actin (Fragment) OS=Bonamia ostreae GN=ac...    33   9.1  

>tr|B1DDX7|B1DDX7_9BACL DNA polymerase III, alpha subunit
           OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_3328 PE=4 SV=1
          Length = 1220

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +3

Query: 105 VSRAARSLPDALASSDKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRSATHEG 284
           V RAA+ +P+ L  + + A    + LRE  +   +T  D   K     + MP  ++TH  
Sbjct: 465 VDRAAKMIPNQLHITLEEALRISEGLREACQRQPRT--DAMIKMALKVEGMPRHASTHAA 522

Query: 285 VSASSGLCLPNGAPCPMGSER 347
               SG  L +  P   GSER
Sbjct: 523 GVVISGGPLTDYVPLQAGSER 543


>tr|A9FXY3|A9FXY3_9RHOB Universal stress protein family protein
           OS=Phaeobacter gallaeciensis BS107 GN=RGBS107_03763 PE=4
           SV=1
          Length = 279

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 367 HITGLCSLSEPIGQGAPFGRQRPEEAETPSCVALLEGMSCAIVL---C-LNDQSQTVFL 203
           H+  L    + +  G P+G+ RP EAE     AL EG +  +V+   C L DQ +TV +
Sbjct: 102 HVARLARFCDLVVLGQPYGKDRPAEAEAIVEAALFEGRAPVLVVPDDCPLPDQPKTVLV 160


>tr|A5K3P6|A5K3P6_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_117920 PE=4 SV=1
          Length = 1689

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 105 VSRAARSLPDALASSDKGAFSSEDALRELL--EEIKKTVCDWSFKHKTIAQDMPSRSATH 278
           +S  A S  DA+    KG    E+  RE +  E +   V D   +  T A    S S TH
Sbjct: 63  ISVIASSEVDAVGDQQKGKDDGEEVDREAVDHEAVANEVVDNEVQASTTAHVNESASGTH 122

Query: 279 EGVSASSGLCLPNGAPCPMGSER 347
            G   +   C    + C +G+E+
Sbjct: 123 IGDDNADVKCTVESSTCQIGNEK 145


>tr|Q4P3X9|Q4P3X9_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM05184.1 PE=4 SV=1
          Length = 348

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
 Frame = +3

Query: 99  TLVSRAARSLPDALASSDKGAFSSEDALRELLEEIKKTVCDWSFKHKTI---------AQ 251
           T  S AA+S P+   S    A + ED   E  +   K V +W  K + +         A+
Sbjct: 179 TKASEAAKSKPEKPVSKAVSATNGEDKSEESRDPETKKVKEWRHKVQKVFLGRDGTINAE 238

Query: 252 DMPSRSATHEGVSASSGL 305
           DMPS  AT   +    G+
Sbjct: 239 DMPSADATFSTIEEYDGM 256


>tr|Q7ZUK7|Q7ZUK7_DANRE WW domain containing adaptor with
           coiled-coil OS=Danio rerio GN=wac PE=2 SV=1
          Length = 558

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 195 EEIKKTVCDWSFKHKTIAQDMPSRSATHEGVSASSGLCLPNGAPCPMGSEREQSPVM 365
           E ++ T   +S    +IA + PS        +A SGL +PN A    GS    SPVM
Sbjct: 183 EAMQATPASYSSTKSSIATEKPSSLTPSSSSAAVSGLDVPNSASSASGSTVPVSPVM 239


>tr|Q6PUS1|Q6PUS1_DANRE WW domain containing adaptor with
           coiled-coil OS=Danio rerio GN=wac PE=2 SV=1
          Length = 557

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 195 EEIKKTVCDWSFKHKTIAQDMPSRSATHEGVSASSGLCLPNGAPCPMGSEREQSPVM 365
           E ++ T   +S    +IA + PS        +A SGL +PN A    GS    SPVM
Sbjct: 183 EAMQATPASYSSTKSSIATEKPSSLTPSSSSAAVSGLNVPNSASSASGSTVPVSPVM 239


>tr|B5I0D6|B5I0D6_9ACTO Putative uncharacterized protein
           OS=Streptomyces sviceus ATCC 29083 GN=SSEG_09679 PE=4
           SV=1
          Length = 434

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 171 EDALRELLEEIKKTVCDWSFKHKTIAQDMPSRSATHEGVSASSGLCLPNGAPCP 332
           ED  R  L+ +     DW F H+ +A   P  S T+ G+ A+     P G   P
Sbjct: 318 EDEFRATLDLLTGPDVDWEFSHREVALQAPVDSPTYAGMRAAVEEFAPEGHVVP 371


>tr|Q3ZAJ5|Q3ZAJ5_DROME AT26678p (Fragment) OS=Drosophila
           melanogaster GN=Arp53D PE=2 SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 96  CTLVSRAARSLPDALASS--DKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRS 269
           C  V  A R L D L     ++G      A RE++ EIK+ +C  S  +     D+  + 
Sbjct: 172 CVRVDLAGRDLTDYLCKLLLERGVTMGTSAEREIVREIKEKLCYVSMNYAK-EMDLHGKV 230

Query: 270 ATHEGVSASSGLCLPNGAPCPMGSEREQSP 359
            T+E         LP+G    +G ER + P
Sbjct: 231 ETYE---------LPDGQKIVLGCERFRCP 251


>tr|Q28WQ3|Q28WQ3_DROPS GA18861 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA18861 PE=3 SV=2
          Length = 377

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 96  CTLVSRAARSLPDALAS--SDKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRS 269
           C  +  A R L D L    +++G   +  A R+++ EIK+  C  S  +     +   R 
Sbjct: 171 CMRLDLAGRDLSDYLCKLLTERGRNMTTSAERDIVREIKEKHCYVSLDYDRELMEQSDRL 230

Query: 270 ATHEGVSASSGLCLPNGAPCPMGSEREQSP 359
             +   S      LP+G    +GSER + P
Sbjct: 231 QQNSCSSDEEVYQLPDGQRIKLGSERFRCP 260


>tr|B6KSG0|B6KSG0_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_014520 PE=4 SV=1
          Length = 836

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/87 (27%), Positives = 39/87 (44%)
 Frame = +3

Query: 96  CTLVSRAARSLPDALASSDKGAFSSEDALRELLEEIKKTVCDWSFKHKTIAQDMPSRSAT 275
           C  + +AA   P +  +    A  S +A   +L+++K  V     +   +       +A 
Sbjct: 337 CEDLVKAAYGGPPSPTAPTSAAAMSREAFSWILKDLKSQVNSLVVEFLFLLDGGVLTNAA 396

Query: 276 HEGVSASSGLCLPNGAPCPMGSEREQS 356
           H+    SSG   PN AP   GS+RE+S
Sbjct: 397 HDAGGRSSG---PNSAPASGGSDREKS 420