| BP912087 |
| Clone id |
YMU001_000012_H09 |
| Library |
YMU01 |
| Length |
468 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000012_H09. |
| Accession |
BP912087 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL155Contig1 |
| Sequence |
CTGCAGGTACTCGAGTACCTGCGAGAGAGAGAGGGGATTTGCGTTTGGCTGCAGCAGTGC
GCAAATCACATACTAATATATATAGTGAGCAAGCTTAGAAAGTGTGACCATAAAATGCAC
TTTAACATGTCAAGGAAGAACCATAAAGTTTATAACATTTATCTATGTGTCACCTGTGTG
GGGATCTCACAAAGCCTACCATAGGTGCATCTCTAGCTAGTTGCAACAACTTATTGTTGG
GTGGGGGCCCCTATTGGAGGGTTTTCTAGAGAACCATATCGACCTTGCGGCGGGTGGTGC
ATTGGGTTTTATAGGCGTTGCATCCCTTGTCGAGGGGTTGCAAAAGGCTATGGAGATAGG
TTATGTCGTGGAGGGGGCAACCAACTATCTCTTTCTTCTTTGATAGTGCTTGGGGACGAA
GATCTGGCTTATTTTTGCTTGCAAAGGAGACCTTCCCTCACGCTCCCC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9EQG3 |
| Definition |
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus |
| Align length |
81 |
| Score (bit) |
35.4 |
| E-value |
0.12 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912087|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_H09.
(468 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2 35 0.12
sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptoco... 34 0.36
sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1 OS=Cryptoco... 32 1.4
sp|P59737|AROP_SHIFL Aromatic amino acid transport protein aroP ... 32 1.8
sp|P0A187|AROP_SALTY Aromatic amino acid transport protein aroP ... 32 1.8
sp|P0A188|AROP_SALTI Aromatic amino acid transport protein aroP ... 32 1.8
sp|P15993|AROP_ECOLI Aromatic amino acid transport protein aroP ... 32 1.8
sp|Q8FL49|AROP_ECOL6 Aromatic amino acid transport protein aroP ... 32 1.8
sp|Q8X968|AROP_ECO57 Aromatic amino acid transport protein aroP ... 32 1.8
sp|Q31GZ1|MURA_THICR UDP-N-acetylglucosamine 1-carboxyvinyltrans... 30 4.0
sp|Q6ZUX7|LHPL2_HUMAN Lipoma HMGIC fusion partner-like 2 protein... 30 5.3
sp|Q5EA90|T106A_BOVIN Transmembrane protein 106A OS=Bos taurus G... 30 6.9
sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2 29 8.9
sp|A1CL82|MCA1B_ASPCL Metacaspase-1B OS=Aspergillus clavatus GN=... 29 8.9
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen... 29 9.1
sp|O95872|BAT4_HUMAN Protein BAT4 OS=Homo sapiens GN=BAT4 PE=2 SV=1 29 9.1
>sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2
Length = 652
Score = 35.4 bits (80), Expect = 0.12
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = -2
Query: 428 ARSSSPST--IKEERDSWL--PPPRHNLSP*PFATPRQGMQRL*NPMHHP--PQGRYGSL 267
A +S+P+T +K++R SW PPP HN SP A+ R +P HP P +
Sbjct: 121 ATASTPATTPVKKKRQSWFPPPPPGHNASPSTAASRR-------DPALHPPLPPKPCSPI 173
Query: 266 ENP-PIGAPTQQ*VVATS*RC 207
+P P+G +Q AT+ C
Sbjct: 174 ASPKPLGRTNRQIHAATAGAC 194
>sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1
OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1
Length = 625
Score = 33.9 bits (76), Expect = 0.36
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -2
Query: 416 SPSTIKEERDSWLPPPRHNLSP*PFATPRQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQ 237
+P+ ++EER+S PPP+ P A P Q HPP + + + P AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQ 464
Query: 236 Q 234
Q
Sbjct: 465 Q 465
>sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1
OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1
Length = 616
Score = 32.0 bits (71), Expect = 1.4
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -2
Query: 416 SPSTIKEERDSWLPPPRHNLSP*PFATPRQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQ 237
+P+ ++EER+S PPP+ P A P Q HPP + + P AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPIQ 464
Query: 236 Q 234
Q
Sbjct: 465 Q 465
>sp|P59737|AROP_SHIFL Aromatic amino acid transport protein aroP
OS=Shigella flexneri GN=aroP PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 11 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 63
>sp|P0A187|AROP_SALTY Aromatic amino acid transport protein aroP
OS=Salmonella typhimurium GN=aroP PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 11 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 63
>sp|P0A188|AROP_SALTI Aromatic amino acid transport protein aroP
OS=Salmonella typhi GN=aroP PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 11 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 63
>sp|P15993|AROP_ECOLI Aromatic amino acid transport protein aroP
OS=Escherichia coli (strain K12) GN=aroP PE=1 SV=3
Length = 457
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 11 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 63
>sp|Q8FL49|AROP_ECOL6 Aromatic amino acid transport protein aroP
OS=Escherichia coli O6 GN=aroP PE=3 SV=1
Length = 456
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 62
>sp|Q8X968|AROP_ECO57 Aromatic amino acid transport protein aroP
OS=Escherichia coli O157:H7 GN=aroP PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LLEGFLENHIDLAA-GGALG---FIGVASLVEGLQKAMEIGYVVEGATNYLFL 397
L G HI L A GGA+G F+G AS+++ + +GY + G +L +
Sbjct: 11 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIM 63
>sp|Q31GZ1|MURA_THICR UDP-N-acetylglucosamine
1-carboxyvinyltransferase OS=Thiomicrospira crunogena
(strain XCL-2) GN=murA PE=3 SV=1
Length = 418
Score = 30.4 bits (67), Expect = 4.0
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLAAGGALGFIGVASLVEGLQK-----AMEIGYVVEGA 379
I+ GPLL F E + L G A+G V +EG+QK +E GY++ A
Sbjct: 96 ILTMGPLLARFGEAKVSLPGGCAIGSRPVNIHIEGMQKMGAEIKVEQGYIIATA 149
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B3MN94 |
| Definition |
tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae |
| Align length |
54 |
| Score (bit) |
38.9 |
| E-value |
0.13 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912087|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_H09.
(468 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF1516... 39 0.13
tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG47... 37 0.38
tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 P... 37 0.38
tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM1679... 37 0.38
tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 P... 37 0.38
tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1 37 0.50
tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK246... 37 0.50
tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520 ... 37 0.50
tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI179... 37 0.50
tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura pseud... 37 0.65
tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH1117... 37 0.65
tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL155... 37 0.65
tr|B4Q6N2|B4Q6N2_DROSI GD23071 OS=Drosophila simulans GN=GD23071... 36 0.85
tr|Q14DU0|Q14DU0_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=1 35 1.4
tr|Q14DQ7|Q14DQ7_MOUSE Scel protein OS=Mus musculus GN=Scel PE=2... 35 1.4
tr|A4VMR2|A4VMR2_PSEU5 Aromatic amino acid transport protein Aro... 35 1.4
tr|A7UVK1|A7UVK1_ANOGA AGAP001881-PA (Fragment) OS=Anopheles gam... 35 2.5
tr|Q05CI7|Q05CI7_MOUSE Scel protein (Fragment) OS=Mus musculus G... 35 2.5
tr|A7CUN5|A7CUN5_9BACT Amino acid permease-associated region OS=... 35 2.5
tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckelia... 34 3.2
tr|Q5BZJ8|Q5BZJ8_SCHJA SJCHGC09451 protein (Fragment) OS=Schisto... 33 7.1
tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936 ... 33 9.3
tr|Q4KIP0|Q4KIP0_PSEF5 Aromatic amino acid permease OS=Pseudomon... 33 9.4
tr|B5Y057|B5Y057_KLEP3 Amino acid permease family protein OS=Kle... 33 9.4
tr|B5RH88|B5RH88_SALG2 Aromatic amino acid transport protein Aro... 33 9.4
tr|A6T5W6|A6T5W6_KLEP7 Putative phenylalanine-specific permease ... 33 9.4
tr|A3RTK8|A3RTK8_RALSO Putative periplasmic protein OS=Ralstonia... 33 9.4
tr|A7T2Q6|A7T2Q6_NEMVE Predicted protein (Fragment) OS=Nematoste... 33 9.4
>tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF15164
PE=4 SV=1
Length = 489
Score = 38.9 bits (89), Expect = 0.13
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +GYV +G N
Sbjct: 380 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGYVTKGNQN 433
>tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG4726
PE=2 SV=1
Length = 512
Score = 37.4 bits (85), Expect = 0.38
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V +G N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454
>tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 PE=4
SV=1
Length = 509
Score = 37.4 bits (85), Expect = 0.38
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V +G N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451
>tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM16795
PE=4 SV=1
Length = 512
Score = 37.4 bits (85), Expect = 0.38
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V +G N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454
>tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 PE=4
SV=1
Length = 509
Score = 37.4 bits (85), Expect = 0.38
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V +G N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451
>tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1
Length = 675
Score = 37.0 bits (84), Expect = 0.50
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 40 CVWLQQCANHILIYIVSKLRKCDHKMHFNMSRKNHKVYNIYLCVTCVG 183
C L C N + RKCDH+M N+S+K KVY + V+C G
Sbjct: 15 CRMLLSCKNSSIFGY--SFRKCDHRMGTNLSKKQFKVYGLRGYVSCRG 60
>tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK24669
PE=4 SV=1
Length = 514
Score = 37.0 bits (84), Expect = 0.50
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V G N
Sbjct: 401 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 454
>tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520
PE=4 SV=1
Length = 512
Score = 37.0 bits (84), Expect = 0.50
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V G N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452
>tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI17977
PE=4 SV=1
Length = 512
Score = 37.0 bits (84), Expect = 0.50
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V G N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452
>tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18388 PE=4 SV=1
Length = 514
Score = 36.6 bits (83), Expect = 0.65
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 233 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGYVVEGATN 385
IV G + GFL NHID+A AG + A+ + G+ + +G+V G N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456
|