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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912097
Clone id YMU001_000015_A12
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCAGATCCGAGCGCCTTCTTTCCTATTGATGTCAAGTTCTGTGCATCCAAATTTTTCTGT
AATGTGAAGCTGTCAGGTGTATGCGATGCACAGAATGGTACTAATACAAGACACAACAGT
GAAACACAGCTTGTCGTTGACAGCTATCAGGTTGTGTAATGTGGCGGCTCAGAACACAGA
TGCCATTTTTCTGGCTGCTGAAACCCAGATTTGCAATGTTGATCCTGGCCTGTAAGCTTT
GTGCATTTTTTGTGGGCAACCATGTGTTCATACCTGGAGGGTCCATGAATACTTGCCTCA
GCCTGCCTACCGAGAAAATGCCACAAAGCTAGGAAGTTTATTCCATGATTTATGTATGTG
CGTTAATTTCTCTATGAATCTATCGTATTGATTACTTGATTGTCAGAGGTATATTGGGGG
CTCGTCATCTCTTTCGTCCATGAGGGCATGTTGGGAATGACACTGTTTTGTCAGAGGTTT
ATTGGCAAAAAAAAAAAAAAACAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0J649
Definition sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica
Align length 53
Score (bit) 49.7
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912097|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_A12.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa s...    50   7e-06
sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa s...    47   6e-05
sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa s...    47   6e-05
sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus G...    44   3e-04
sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii GN=A...    44   3e-04
sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus GN=A...    44   3e-04
sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens GN=A...    44   3e-04
sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus GN=...    44   3e-04
sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARC...    44   3e-04
sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa s...    43   7e-04
sp|Q93Y22|COPD_ARATH Coatomer subunit delta OS=Arabidopsis thali...    40   0.007
sp|Q11107|LIN13_CAEEL Zinc finger protein lin-13 OS=Caenorhabdit...    31   2.6  
sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharo...    31   2.6  
sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 ...    31   3.4  
sp|Q89NS0|CAAL_BRAJA Carboxylate-amine ligase bll3764 OS=Bradyrh...    29   9.8  

>sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa
           subsp. japonica GN=Os08g0368000 PE=2 SV=1
          Length = 376

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTN-TRHNSETQLVVDSYQVV 156
           +DPS F+PI V F AS  F NVK++G+     G+N  +++   +LV D+YQVV
Sbjct: 324 ADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 376


>sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa
           subsp. japonica GN=Os05g0311000 PE=2 SV=1
          Length = 523

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 20/52 (38%), Positives = 34/52 (65%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DPS FFPI + F AS  F ++K++G+   ++G   +++   +LV  +YQVV
Sbjct: 472 ADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523


>sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa
           subsp. japonica GN=Os05g0310800 PE=2 SV=1
          Length = 524

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 20/52 (38%), Positives = 34/52 (65%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DPS FFPI + F AS  F ++K++G+   ++G   +++   +LV  +YQVV
Sbjct: 473 ADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524


>sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus
           GN=Arcn1 PE=2 SV=1
          Length = 511

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 462 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511


>sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii
           GN=ARCN1 PE=2 SV=1
          Length = 511

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 462 PNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511


>sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus
           GN=Arcn1 PE=2 SV=1
          Length = 511

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 462 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511


>sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens
           GN=ARCN1 PE=1 SV=1
          Length = 511

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 462 PNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511


>sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus
           GN=ARCN1 PE=2 SV=1
          Length = 510

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 461 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510


>sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARCN1
           PE=1 SV=1
          Length = 511

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFP+ V F + K +CN++++ V      +  R ++ET  +VD Y+++
Sbjct: 462 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511


>sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa
           subsp. japonica GN=Os01g0833700 PE=2 SV=2
          Length = 518

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DPS FFPI V F AS  F ++K++ +   + G+  + +   +LV  +YQVV
Sbjct: 467 ADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
tr_hit_id A9RGU9
Definition tr|A9RGU9|A9RGU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 52
Score (bit) 64.7
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912097|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_A12.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RGU9|A9RGU9_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea...    55   2e-06
tr|A9RI77|A9RI77_PHYPA Predicted protein OS=Physcomitrella paten...    54   3e-06
tr|A4RV57|A4RV57_OSTLU Predicted protein OS=Ostreococcus lucimar...    50   6e-05
tr|A3BSH8|A3BSH8_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|B8BA91|B8BA91_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|Q6Z270|Q6Z270_ORYSJ Putative uncharacterized protein OSJNBa00...    47   5e-04
tr|A3BSH7|A3BSH7_ORYSJ Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|Q7ZU89|Q7ZU89_DANRE Archain 1 like OS=Danio rerio GN=arcn1l P...    47   6e-04
tr|B8AWD9|B8AWD9_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A3B2G5|A3B2G5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays PE=2 SV=1                 45   0.001
tr|B6TDR8|B6TDR8_MAIZE Coatomer subunit delta OS=Zea mays PE=2 SV=1    45   0.001
tr|B4G0V4|B4G0V4_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.001
tr|A7T498|A7T498_NEMVE Predicted protein OS=Nematostella vectens...    45   0.001
tr|A7SRJ1|A7SRJ1_NEMVE Predicted protein OS=Nematostella vectens...    45   0.001
tr|Q4RYQ9|Q4RYQ9_TETNG Chromosome 16 SCAF14974, whole genome sho...    45   0.002
tr|Q91W48|Q91W48_MOUSE Archain 1 OS=Mus musculus GN=Arcn1 PE=2 SV=1    44   0.003
tr|Q8R1S6|Q8R1S6_MOUSE Arcn1 protein (Fragment) OS=Mus musculus ...    44   0.003
tr|Q3U4S9|Q3U4S9_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.003
tr|Q3TDU1|Q3TDU1_MOUSE Putative uncharacterized protein (Fragmen...    44   0.003
tr|A7P2Q5|A7P2Q5_VITVI Chromosome chr1 scaffold_5, whole genome ...    44   0.003
tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|Q6MZV5|Q6MZV5_HUMAN Putative uncharacterized protein DKFZp686...    44   0.003
tr|B4E1X2|B4E1X2_HUMAN cDNA FLJ51620, highly similar to Coatomer...    44   0.003
tr|B0YIW6|B0YIW6_HUMAN Coatomer subunit delta variant 2 (Archain...    44   0.003
tr|B0YIW5|B0YIW5_HUMAN Coatomer subunit delta variant 1 (Archain...    44   0.003
tr|B6L4A9|B6L4A9_BRAFL Putative uncharacterized protein OS=Branc...    44   0.004
tr|B7EGT8|B7EGT8_ORYSJ cDNA clone:J023027K10, full insert sequen...    43   0.007

>tr|A9RGU9|A9RGU9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_104542 PE=4 SV=1
          Length = 521

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DP++FFPIDVKF ++K FC++K+  V + Q+G   +    TQLVVDSYQVV
Sbjct: 470 ADPNSFFPIDVKFTSNKTFCDMKVGSVVECQSGNTVKFGRRTQLVVDSYQVV 521


>tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_204046 PE=4 SV=1
          Length = 521

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 28/52 (53%), Positives = 38/52 (73%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DP++FFPIDVKF ++K FC++K+  V   QNG   +    TQL+VDSYQVV
Sbjct: 470 ADPNSFFPIDVKFSSNKTFCDLKVGSVVQTQNGNAVKFGRRTQLLVDSYQVV 521


>tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 529

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 35/52 (67%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +DPS+FFPIDVKF  +K FC++K++ V      +  +    TQLV +SYQVV
Sbjct: 478 ADPSSFFPIDVKFSTAKTFCDIKVANVIPINGVSPLKFAGRTQLVTESYQVV 529


>tr|A9RI77|A9RI77_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159195 PE=4 SV=1
          Length = 514

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 16/68 (23%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVK----------------LSGVCDAQNGTNTRHNSETQL 132
           +DP++FFPIDVKF ++K FC++K                +  V   Q+G + +    TQL
Sbjct: 447 ADPNSFFPIDVKFTSNKTFCDLKVCVLMLDFFDVRVEGLVGSVIQTQSGNSVKFGKRTQL 506

Query: 133 VVDSYQVV 156
           VVDSYQVV
Sbjct: 507 VVDSYQVV 514


>tr|A4RV57|A4RV57_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_94212 PE=4 SV=1
          Length = 424

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/52 (40%), Positives = 33/52 (63%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           +D  AFFPIDV F ++K FC+++++ +    +G        T ++VDSYQVV
Sbjct: 373 ADTEAFFPIDVHFSSAKTFCDIEVASISRTTDGAPVTFGGRTMMLVDSYQVV 424


>tr|A3BSH8|A3BSH8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026000 PE=4 SV=1
          Length = 708

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTN-TRHNSETQLVVDSYQVV 156
           +DPS F+PI V F AS  F NVK++G+     G+N  +++   +LV D+YQVV
Sbjct: 656 ADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 708


>tr|B8BA91|B8BA91_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29009 PE=4 SV=1
          Length = 389

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTN-TRHNSETQLVVDSYQVV 156
           +DPS F+PI + F AS  F NVK++G+     G+N  +++   +LV D+YQVV
Sbjct: 337 ADPSMFYPISIGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 389


>tr|Q6Z270|Q6Z270_ORYSJ Putative uncharacterized protein
           OSJNBa0091C18.10 (Putative uncharacterized protein
           P0410E02.38) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0091C18.10 PE=4 SV=1
          Length = 77

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTN-TRHNSETQLVVDSYQVV 156
           +DPS FFPI V F  S  F +VK+ G+   + G+N  +++   +LV D+YQVV
Sbjct: 25  ADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNYQVV 77


>tr|A3BSH7|A3BSH7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025999 PE=4 SV=1
          Length = 151

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   SDPSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTN-TRHNSETQLVVDSYQVV 156
           +DPS FFPI V F  S  F +VK+ G+   + G+N  +++   +LV D+YQVV
Sbjct: 99  ADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNYQVV 151


>tr|Q7ZU89|Q7ZU89_DANRE Archain 1 like OS=Danio rerio GN=arcn1l PE=2
           SV=1
          Length = 512

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 34/50 (68%)
 Frame = +1

Query: 7   PSAFFPIDVKFCASKFFCNVKLSGVCDAQNGTNTRHNSETQLVVDSYQVV 156
           P+ FFPI+V F + + FC+++++ V   + G+  + +SET  VVD Y+++
Sbjct: 463 PNDFFPINVSFVSKRNFCDIQVAKVTYVEGGSPVKFSSETSFVVDKYEIL 512