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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912104
Clone id YMU001_000015_B10
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGAGTAGTCGGGCATCTAGAAACATGTGACAAAGATAGCCGACATTGCTGCTGTCACTT
GGATGGTAAGTTTAAGATTCTCCATGTGTGGGTACTCTTGCCTTCCAACTGGTTGATGGT
CGCTCTGGTCGTTTTTCTGTGTCTTGACACATAATCAAATCTTTCTGCTGTGCAAACCAT
TTGATGCTTTCATGATAAAAAACAATCTTAAATTGAACCACATAATCTGCTCGTTCTCAT
TTGACTCATATATGAACAGACATGGTTTGGTTGGAGTTCAATTAATACGCTCCAGGATCT
CGCTGGAGGAGAACAGGGATCTACCGAAAGACACATACTGAGAAAGGTGATGATACCGAA
GGTTTCTATGCTGGCATCAAGAAGCTGTCTTCTGAAGAAGCATCTGCTTGGATGCGGCTG
TGGCCAAAGGAACCCTTGGAGTAGGGGTAGTTGATTTTGGCATTTGTCATCACTATTTGG
TCATTCTCTGACCCCATTTGCATCAGCAAATGCTGATATATATTCCATTCTTTAGATTAT
AATCTCAA
■■Homology search results ■■ -
sp_hit_id Q6NLB1
Definition sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis thaliana
Align length 63
Score (bit) 71.2
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912104|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_B10.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis tha...    71   3e-12
sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis tha...    66   1e-10
sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis tha...    63   8e-10
sp|Q7U7F9|CARA_SYNPX Carbamoyl-phosphate synthase small chain OS...    32   2.6  
sp|P34163|TGL1_YEAST Sterol esterase TGL1 OS=Saccharomyces cerev...    31   3.4  

>sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis
           thaliana GN=At2g26850 PE=2 SV=1
          Length = 371

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 TDMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKLS-SEEASAWMRLWPKE 432
           ++M+ LEFN Y  GSRWR+T I R+ H EKG++ +GFY GI+K++  E+   W RLWP  
Sbjct: 309 SEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSS 368

Query: 433 PLE 441
            LE
Sbjct: 369 ILE 371



 Score = 32.7 bits (73), Expect = 1.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 5   VVGHLETCDKDSRHCCCH 58
           VVGH+E+CD +  HC CH
Sbjct: 290 VVGHMESCDGNLNHCQCH 307


>sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis
           thaliana GN=At2g41170 PE=2 SV=1
          Length = 371

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +1

Query: 265 VWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEPLE 441
           V +EF  + P S WRRT I RK H E G++  GFY G+KKL + EE S W +LWP + LE
Sbjct: 312 VVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371


>sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis
           thaliana GN=At2g32560 PE=2 SV=1
          Length = 371

 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 TDMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKLS-SEEASAWMRLWPKE 432
           ++ V LEFN Y  GSRWRRT I R  H E+G++ +GFY GI+KL+  EE + W R WP  
Sbjct: 310 SETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCS 368

Query: 433 PLE 441
            LE
Sbjct: 369 ILE 371



 Score = 35.4 bits (80), Expect = 0.18
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCHL 61
           G+V HLE+CD D  HC CHL
Sbjct: 290 GLVRHLESCDGDHNHCHCHL 309


>sp|Q7U7F9|CARA_SYNPX Carbamoyl-phosphate synthase small chain
           OS=Synechococcus sp. (strain WH8102) GN=carA PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 228 CSFSFDSYMNRHGLVGVQLIRSRISLEENRD 320
           CS S D++M RHGLVG+  + +R  +   RD
Sbjct: 98  CSESLDNWMERHGLVGICGVDTRALVRRLRD 128


>sp|P34163|TGL1_YEAST Sterol esterase TGL1 OS=Saccharomyces
           cerevisiae GN=TGL1 PE=1 SV=1
          Length = 548

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 125 ERPSTSWKARVPTHGES*TYHPSDSS 48
           E PST+WK   PTHG S   H +D S
Sbjct: 441 ELPSTTWKTTHPTHGLSYRTHSADRS 466
tr_hit_id A9TEN5
Definition tr|A9TEN5|A9TEN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 80.1
E-value 7.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912104|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_B10.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TEN5|A9TEN5_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|A9U4Y9|A9U4Y9_PHYPA Predicted protein OS=Physcomitrella paten...    80   9e-14
tr|A9TAK6|A9TAK6_PHYPA Predicted protein OS=Physcomitrella paten...    79   2e-13
tr|A7PFU7|A7PFU7_VITVI Chromosome chr6 scaffold_15, whole genome...    79   2e-13
tr|A5B633|A5B633_VITVI Putative uncharacterized protein OS=Vitis...    79   2e-13
tr|Q5VR67|Q5VR67_ORYSJ cDNA clone:001-112-H09, full insert seque...    78   3e-13
tr|B8AAY2|B8AAY2_ORYSI Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|B7ZZX1|B7ZZX1_MAIZE Putative uncharacterized protein OS=Zea m...    78   3e-13
tr|B6SWR5|B6SWR5_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1         78   3e-13
tr|Q9LG67|Q9LG67_ORYSJ cDNA clone:J013001A01, full insert sequen...    74   5e-12
tr|B8LR71|B8LR71_PICSI Putative uncharacterized protein OS=Picea...    73   9e-12
tr|B8ACK5|B8ACK5_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|A2ZRV6|A2ZRV6_ORYSJ Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|B6U2H4|B6U2H4_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1         72   2e-11
tr|Q2HSY4|Q2HSY4_MEDTR Cyclin-like F-box OS=Medicago truncatula ...    72   2e-11
tr|A7PT81|A7PT81_VITVI Chromosome chr8 scaffold_29, whole genome...    72   2e-11
tr|A5BWU2|A5BWU2_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A2ZYT1|A2ZYT1_ORYSJ Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|O80894|O80894_ARATH Putative uncharacterized protein At2g3257...    41   0.036
tr|Q2HSY2|Q2HSY2_MEDTR Cyclin-like F-box OS=Medicago truncatula ...    39   0.14 
tr|Q2HSX6|Q2HSX6_MEDTR Cyclin-like F-box OS=Medicago truncatula ...    35   2.0  
tr|A6EIP7|A6EIP7_9SPHI Putative hydrolase OS=Pedobacter sp. BAL3...    35   3.4  
tr|A3V1T2|A3V1T2_9RHOB Xanthine dehydrogenase, B subunit OS=Lokt...    34   5.8  

>tr|A9TEN5|A9TEN5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144525 PE=4 SV=1
          Length = 322

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 37/62 (59%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKLSSEEA-SAWMRLWPKEP 435
           D VWLEFN Y  GSRWRR  I RK+H E+G++ EGFY GI+KL+S EA   W  LWP E 
Sbjct: 261 DTVWLEFNQYMVGSRWRRAAINRKSHREEGNEEEGFYGGIRKLTSREAIGTWNDLWPTED 320

Query: 436 LE 441
           L+
Sbjct: 321 LQ 322



 Score = 35.0 bits (79), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCHLDGKFKILHVWVLLPSNWLMVAL 127
           GVVGH E C+ ++RHC CH      +     ++ S W   A+
Sbjct: 240 GVVGHSEACEGNTRHCRCHFLDTVWLEFNQYMVGSRWRRAAI 281


>tr|A9U4Y9|A9U4Y9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_102204 PE=4 SV=1
          Length = 307

 Score = 79.7 bits (195), Expect = 9e-14
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           + VWLEF+ Y  GSRWRR  I RK+H E+G++ EGFY GI+KL + EE + W RLWP E 
Sbjct: 246 ETVWLEFSQYTLGSRWRRAAINRKSHREEGNEAEGFYGGIRKLRTKEEINIWKRLWPTET 305

Query: 436 LE 441
           LE
Sbjct: 306 LE 307



 Score = 38.1 bits (87), Expect = 0.31
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCHLDGKFKILHVWV-----LLPSNWLMVAL 127
           GVVGH E CD +SRHC CH      I  VW+      L S W   A+
Sbjct: 225 GVVGHSEACDGNSRHCRCH-----SIETVWLEFSQYTLGSRWRRAAI 266


>tr|A9TAK6|A9TAK6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168907 PE=4 SV=1
          Length = 308

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           + +WLEFN YA GSRWRR  I RK+H E+G + EGFY GI+KL + EE   W +LWP E 
Sbjct: 247 ETLWLEFNQYAVGSRWRRAPINRKSHEEEGSEAEGFYGGIRKLKTKEEIEIWKKLWPTED 306

Query: 436 LE 441
           L+
Sbjct: 307 LQ 308


>tr|A7PFU7|A7PFU7_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017252001
           PE=4 SV=1
          Length = 311

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 36/63 (57%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 TDMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKE 432
           ++ V LEFN Y PGSRWRRT I RK H E+G++ +GFY GI+KL  ++E S W +LWP E
Sbjct: 249 SETVVLEFNQYTPGSRWRRTSINRKDHREEGNEADGFYGGIRKLCRNDEISVWKQLWPAE 308

Query: 433 PLE 441
            LE
Sbjct: 309 VLE 311



 Score = 33.5 bits (75), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCH 58
           G+VGHLE+CD +  +C CH
Sbjct: 229 GIVGHLESCDGNESYCRCH 247


>tr|A5B633|A5B633_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043889 PE=4 SV=1
          Length = 364

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 36/63 (57%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 TDMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKE 432
           ++ V LEFN Y PGSRWRRT I RK H E+G++ +GFY GI+KL  ++E S W +LWP E
Sbjct: 302 SETVVLEFNQYTPGSRWRRTSINRKDHREEGNEADGFYGGIRKLCRNDEISVWKQLWPAE 361

Query: 433 PLE 441
            LE
Sbjct: 362 VLE 364



 Score = 33.5 bits (75), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCH 58
           G+VGHLE+CD +  +C CH
Sbjct: 282 GIVGHLESCDGNESYCRCH 300


>tr|Q5VR67|Q5VR67_ORYSJ cDNA clone:001-112-H09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0702B09.3 PE=2 SV=1
          Length = 427

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           DMV LEF  YA GSRWR+T + RK H EKGD+T+GFY GI+KL +S+E S W + WP + 
Sbjct: 366 DMVVLEFKHYAAGSRWRQTTVSRKDHREKGDETDGFYGGIRKLQTSDEISTWRKFWPVDV 425

Query: 436 L 438
           L
Sbjct: 426 L 426


>tr|B8AAY2|B8AAY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04131 PE=4 SV=1
          Length = 427

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           DMV LEF  YA GSRWR+T + RK H EKGD+T+GFY GI+KL +S+E S W + WP + 
Sbjct: 366 DMVVLEFKHYAAGSRWRQTTVSRKDHREKGDETDGFYGGIRKLQTSDEISTWRKFWPVDV 425

Query: 436 L 438
           L
Sbjct: 426 L 426


>tr|B7ZZX1|B7ZZX1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 428

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           D V LEF  YAPGSRWR+T + RK H EKGD+T+GFY GI+KL + +E S W R WP + 
Sbjct: 367 DTVVLEFQHYAPGSRWRQTTVGRKDHREKGDETDGFYGGIRKLHTKDEISTWRRFWPVDV 426

Query: 436 L 438
           L
Sbjct: 427 L 427


>tr|B6SWR5|B6SWR5_MAIZE Cyclin-like F-box OS=Zea mays PE=2 SV=1
          Length = 428

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 DMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASAWMRLWPKEP 435
           D V LEF  YAPGSRWR+T + RK H EKGD+T+GFY GI+KL + +E S W R WP + 
Sbjct: 367 DTVVLEFQHYAPGSRWRQTTVGRKDHREKGDETDGFYGGIRKLHTKDEISTWRRFWPVDV 426

Query: 436 L 438
           L
Sbjct: 427 L 427


>tr|Q9LG67|Q9LG67_ORYSJ cDNA clone:J013001A01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0281000 PE=2
           SV=2
          Length = 415

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +1

Query: 232 RSHLTHI*TDMVWLEFN*YAPGSRWRRTGIYRKTHTEKGDDTEGFYAGIKKL-SSEEASA 408
           R HL+    D V LEFN Y PGSRWR+  + RK H E+G++ +GFY GI+KL S +E S 
Sbjct: 349 RCHLS----DTVVLEFNQYTPGSRWRQALVNRKDHREEGNEGDGFYGGIRKLRSKDEISK 404

Query: 409 WMRLWPKEPLE 441
           W +LWP + LE
Sbjct: 405 WRQLWPTDILE 415



 Score = 34.3 bits (77), Expect = 4.4
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   GVVGHLETCDKDSRHCCCHL 61
           GVVGHLE+CD     C CHL
Sbjct: 333 GVVGHLESCDGSEHFCRCHL 352