BP912107 |
Clone id |
YMU001_000015_C03 |
Library |
YMU01 |
Length |
417 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000015_C03. |
Accession |
BP912107 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTCTTCACATGATCAACATGTGATTGATTAAACCAACTCTTGCGTCGCATGT ACAACCACCATAATTTGCAATGGTAGTACAATATTAAGAATCTCGGCCGCTGATGATTTT GGAGCAGCCTCCAAGAGTAGGAAGAACAGGTATCCTACTCTTTCGGTTATTATAATATTC ACAAAAAGTTACATAATCAAGCCATGGCATCCAAAGCCTCATAAATATTCCACAACCCAT ATATGTAAATGCTTACAAAGAGGGACTTGGACTAACCAGTGTGCATAATACAACATGCTG GTATCCACATATGTGGGTGTGAGTTGTCTGTGCATGTGTTTGTGTGTGTACATAATACTA CAAAGCTAGAAGGCCAACACCTCTCCATTCCACAGACACATAGTCCCATCTACTTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99PJ2 |
Definition |
sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=Mus musculus |
Align length |
39 |
Score (bit) |
35.8 |
E-value |
0.067 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912107|Adiantum capillus-veneris mRNA, clone: YMU001_000015_C03. (404 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=M... 36 0.067 sp|Q9BZR9|TRIM8_HUMAN Tripartite motif-containing protein 8 OS=H... 36 0.067 sp|Q5M7T9|THNS2_RAT Threonine synthase-like 2 OS=Rattus norvegic... 30 3.7 sp|P18084|ITB5_HUMAN Integrin beta-5 OS=Homo sapiens GN=ITGB5 PE... 30 3.7 sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1... 30 3.7 sp|Q4VBH4|UBE2W_DANRE Probable ubiquitin-conjugating enzyme E2 W... 30 4.8 sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE... 30 4.8 sp|Q752Y3|ALO_ASHGO D-arabinono-1,4-lactone oxidase OS=Ashbya go... 30 4.8 sp|Q8VDW4|UBE2W_MOUSE Probable ubiquitin-conjugating enzyme E2 W... 29 6.3 sp|Q96B02|UBE2W_HUMAN Probable ubiquitin-conjugating enzyme E2 W... 29 6.3 sp|Q07441|ITB5_PAPCY Integrin beta-5 (Fragment) OS=Papio cynocep... 29 6.3
>sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=Mus musculus GN=Trim8 PE=1 SV=2 Length = 551
Score = 35.8 bits (81), Expect = 0.067 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1
Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51 +Y N ++ P+LP GG ++ D+ YC+++AN+GG Sbjct: 445 QYPNGSTTQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 483
>sp|Q9BZR9|TRIM8_HUMAN Tripartite motif-containing protein 8 OS=Homo sapiens GN=TRIM8 PE=2 SV=2 Length = 551
Score = 35.8 bits (81), Expect = 0.067 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1
Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51 +Y N ++ P+LP GG ++ D+ YC+++AN+GG Sbjct: 445 QYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 483
>sp|Q5M7T9|THNS2_RAT Threonine synthase-like 2 OS=Rattus norvegicus GN=Thnsl2 PE=2 SV=1 Length = 485
Score = 30.0 bits (66), Expect = 3.7 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%) Frame = -3
Query: 375 MERCWPSSFVVLCTHTNTC-------TDNSHPHMWIPACCI 274 M RCW + +LC H+ T TD+ P IP CC+ Sbjct: 378 MGRCWEENQYLLCPHSATAVSYHYQQTDSGQPSS-IPRCCL 417
>sp|P18084|ITB5_HUMAN Integrin beta-5 OS=Homo sapiens GN=ITGB5 PE=2 SV=1 Length = 799
Score = 30.0 bits (66), Expect = 3.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -3
Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262 G C+CG +C P +F +C TC D C ++H+G Sbjct: 606 GHCLCGQCQCTEPGAFGEMCEKCPTCPDACSTKRDCVECLLLHSG 650
>sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1 SV=2 Length = 800
Score = 30.0 bits (66), Expect = 3.7 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = -3
Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262 G CVCG +C P +F C TC D C ++H+G Sbjct: 606 GHCVCGQCQCTEPGAFGETCEKCPTCPDACSTKRDCVECLLLHSG 650
>sp|Q4VBH4|UBE2W_DANRE Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2 Length = 151
Score = 29.6 bits (65), Expect = 4.8 Identities = 24/81 (29%), Positives = 33/81 (40%) Frame = +3
Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311 +RYP S ++FT I P HP H YS HIC + W+ +S Sbjct: 62 SRYPFESPQVMFTGENI--PVHP--HVYSNGHICLSILTEDWS-------------PALS 104
Query: 312 CLCMCLCVYIILQS*KANTSP 374 +CL + +L S K P Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125
>sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE=2 SV=2 Length = 798
Score = 29.6 bits (65), Expect = 4.8 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = -3
Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262 G CVCG +C P +F C TC D C ++H G Sbjct: 606 GRCVCGQCQCTEPGAFGETCEKCPTCPDACSSKRDCVECLLLHQG 650
>sp|Q752Y3|ALO_ASHGO D-arabinono-1,4-lactone oxidase OS=Ashbya gossypii GN=ALO1 PE=3 SV=1 Length = 532
Score = 29.6 bits (65), Expect = 4.8 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 9/65 (13%) Frame = -2
Query: 193 HGLIM*LFVNIIITERVGYLFFLLLEAAPKSSAAEILN-----IVLPLQIMVV----VHA 41 HGL+ +VN+ + G L FL E P+ A +L+ I++ I VV +H+ Sbjct: 145 HGLVSSQYVNLTLVNGRGELVFLDSEHEPEVFRAAMLSLGKLGIIVRATIRVVPAFNIHS 204
Query: 40 TQELV 26 TQE++ Sbjct: 205 TQEVI 209
>sp|Q8VDW4|UBE2W_MOUSE Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1 Length = 151
Score = 29.3 bits (64), Expect = 6.3 Identities = 24/81 (29%), Positives = 33/81 (40%) Frame = +3
Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311 +RYP S ++FT I P HP H YS HIC + W+ +S Sbjct: 62 SRYPFDSPQVMFTGENI--PIHP--HVYSNGHICLSILTEDWS-------------PALS 104
Query: 312 CLCMCLCVYIILQS*KANTSP 374 +CL + +L S K P Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125
>sp|Q96B02|UBE2W_HUMAN Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1 Length = 151
Score = 29.3 bits (64), Expect = 6.3 Identities = 24/81 (29%), Positives = 33/81 (40%) Frame = +3
Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311 +RYP S ++FT I P HP H YS HIC + W+ +S Sbjct: 62 SRYPFDSPQVMFTGENI--PVHP--HVYSNGHICLSILTEDWS-------------PALS 104
Query: 312 CLCMCLCVYIILQS*KANTSP 374 +CL + +L S K P Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3U2G3 |
Definition |
tr|Q3U2G3|Q3U2G3_MOUSE Putative uncharacterized protein OS=Mus musculus |
Align length |
39 |
Score (bit) |
35.8 |
E-value |
1.1 |
Report |
|