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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912107
Clone id YMU001_000015_C03
Library
Length 417
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTCTTCACATGATCAACATGTGATTGATTAAACCAACTCTTGCGTCGCATGT
ACAACCACCATAATTTGCAATGGTAGTACAATATTAAGAATCTCGGCCGCTGATGATTTT
GGAGCAGCCTCCAAGAGTAGGAAGAACAGGTATCCTACTCTTTCGGTTATTATAATATTC
ACAAAAAGTTACATAATCAAGCCATGGCATCCAAAGCCTCATAAATATTCCACAACCCAT
ATATGTAAATGCTTACAAAGAGGGACTTGGACTAACCAGTGTGCATAATACAACATGCTG
GTATCCACATATGTGGGTGTGAGTTGTCTGTGCATGTGTTTGTGTGTGTACATAATACTA
CAAAGCTAGAAGGCCAACACCTCTCCATTCCACAGACACATAGTCCCATCTACTTTC
■■Homology search results ■■ -
sp_hit_id Q99PJ2
Definition sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=Mus musculus
Align length 39
Score (bit) 35.8
E-value 0.067
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912107|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C03.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=M...    36   0.067
sp|Q9BZR9|TRIM8_HUMAN Tripartite motif-containing protein 8 OS=H...    36   0.067
sp|Q5M7T9|THNS2_RAT Threonine synthase-like 2 OS=Rattus norvegic...    30   3.7  
sp|P18084|ITB5_HUMAN Integrin beta-5 OS=Homo sapiens GN=ITGB5 PE...    30   3.7  
sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1...    30   3.7  
sp|Q4VBH4|UBE2W_DANRE Probable ubiquitin-conjugating enzyme E2 W...    30   4.8  
sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE...    30   4.8  
sp|Q752Y3|ALO_ASHGO D-arabinono-1,4-lactone oxidase OS=Ashbya go...    30   4.8  
sp|Q8VDW4|UBE2W_MOUSE Probable ubiquitin-conjugating enzyme E2 W...    29   6.3  
sp|Q96B02|UBE2W_HUMAN Probable ubiquitin-conjugating enzyme E2 W...    29   6.3  
sp|Q07441|ITB5_PAPCY Integrin beta-5 (Fragment) OS=Papio cynocep...    29   6.3  

>sp|Q99PJ2|TRIM8_MOUSE Tripartite motif-containing protein 8 OS=Mus
           musculus GN=Trim8 PE=1 SV=2
          Length = 551

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51
           +Y N   ++ P+LP  GG   ++   D+ YC+++AN+GG
Sbjct: 445 QYPNGSTTQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 483


>sp|Q9BZR9|TRIM8_HUMAN Tripartite motif-containing protein 8 OS=Homo
           sapiens GN=TRIM8 PE=2 SV=2
          Length = 551

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51
           +Y N   ++ P+LP  GG   ++   D+ YC+++AN+GG
Sbjct: 445 QYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 483


>sp|Q5M7T9|THNS2_RAT Threonine synthase-like 2 OS=Rattus norvegicus
           GN=Thnsl2 PE=2 SV=1
          Length = 485

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = -3

Query: 375 MERCWPSSFVVLCTHTNTC-------TDNSHPHMWIPACCI 274
           M RCW  +  +LC H+ T        TD+  P   IP CC+
Sbjct: 378 MGRCWEENQYLLCPHSATAVSYHYQQTDSGQPSS-IPRCCL 417


>sp|P18084|ITB5_HUMAN Integrin beta-5 OS=Homo sapiens GN=ITGB5 PE=2
           SV=1
          Length = 799

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262
           G C+CG  +C  P +F  +C    TC D          C ++H+G
Sbjct: 606 GHCLCGQCQCTEPGAFGEMCEKCPTCPDACSTKRDCVECLLLHSG 650


>sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1
           SV=2
          Length = 800

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262
           G CVCG  +C  P +F   C    TC D          C ++H+G
Sbjct: 606 GHCVCGQCQCTEPGAFGETCEKCPTCPDACSTKRDCVECLLLHSG 650


>sp|Q4VBH4|UBE2W_DANRE Probable ubiquitin-conjugating enzyme E2 W
           OS=Danio rerio GN=ube2w PE=2 SV=2
          Length = 151

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311
           +RYP  S  ++FT   I  P HP  H YS  HIC  +    W+               +S
Sbjct: 62  SRYPFESPQVMFTGENI--PVHP--HVYSNGHICLSILTEDWS-------------PALS 104

Query: 312 CLCMCLCVYIILQS*KANTSP 374
              +CL +  +L S K    P
Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125


>sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE=2
           SV=2
          Length = 798

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 393 GLCVCGMERCW-PSSFVVLCTHTNTCTDNSHPHMWIPACCIMHTG 262
           G CVCG  +C  P +F   C    TC D          C ++H G
Sbjct: 606 GRCVCGQCQCTEPGAFGETCEKCPTCPDACSSKRDCVECLLLHQG 650


>sp|Q752Y3|ALO_ASHGO D-arabinono-1,4-lactone oxidase OS=Ashbya
           gossypii GN=ALO1 PE=3 SV=1
          Length = 532

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
 Frame = -2

Query: 193 HGLIM*LFVNIIITERVGYLFFLLLEAAPKSSAAEILN-----IVLPLQIMVV----VHA 41
           HGL+   +VN+ +    G L FL  E  P+   A +L+     I++   I VV    +H+
Sbjct: 145 HGLVSSQYVNLTLVNGRGELVFLDSEHEPEVFRAAMLSLGKLGIIVRATIRVVPAFNIHS 204

Query: 40  TQELV 26
           TQE++
Sbjct: 205 TQEVI 209


>sp|Q8VDW4|UBE2W_MOUSE Probable ubiquitin-conjugating enzyme E2 W
           OS=Mus musculus GN=Ube2w PE=2 SV=1
          Length = 151

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311
           +RYP  S  ++FT   I  P HP  H YS  HIC  +    W+               +S
Sbjct: 62  SRYPFDSPQVMFTGENI--PIHP--HVYSNGHICLSILTEDWS-------------PALS 104

Query: 312 CLCMCLCVYIILQS*KANTSP 374
              +CL +  +L S K    P
Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125


>sp|Q96B02|UBE2W_HUMAN Probable ubiquitin-conjugating enzyme E2 W
           OS=Homo sapiens GN=UBE2W PE=1 SV=1
          Length = 151

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCLQRGTWTNQCA*YNMLVSTYVGVS 311
           +RYP  S  ++FT   I  P HP  H YS  HIC  +    W+               +S
Sbjct: 62  SRYPFDSPQVMFTGENI--PVHP--HVYSNGHICLSILTEDWS-------------PALS 104

Query: 312 CLCMCLCVYIILQS*KANTSP 374
              +CL +  +L S K    P
Sbjct: 105 VQSVCLSIISMLSSCKEKRRP 125
tr_hit_id Q3U2G3
Definition tr|Q3U2G3|Q3U2G3_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 39
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912107|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C03.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3U2G3|Q3U2G3_MOUSE Putative uncharacterized protein OS=Mus m...    36   1.1  
tr|Q5JSM3|Q5JSM3_HUMAN Tripartite motif-containing 8 OS=Homo sap...    36   1.1  
tr|B6NMD2|B6NMD2_BRAFL Putative uncharacterized protein (Fragmen...    35   2.5  
tr|B6LET8|B6LET8_BRAFL Putative uncharacterized protein (Fragmen...    35   2.5  
tr|B7Q529|B7Q529_IXOSC Putative uncharacterized protein OS=Ixode...    34   4.2  
tr|A2DAY8|A2DAY8_TRIVA Putative uncharacterized protein OS=Trich...    33   9.4  

>tr|Q3U2G3|Q3U2G3_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Trim8 PE=2 SV=1
          Length = 551

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51
           +Y N   ++ P+LP  GG   ++   D+ YC+++AN+GG
Sbjct: 445 QYPNGSTTQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 483


>tr|Q5JSM3|Q5JSM3_HUMAN Tripartite motif-containing 8 OS=Homo
           sapiens GN=TRIM8 PE=2 SV=1
          Length = 550

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 167 EYYNNRKSRIPVLPTLGGCSKIISGRDS*YCTTIANYGG 51
           +Y N   ++ P+LP  GG   ++   D+ YC+++AN+GG
Sbjct: 444 QYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVANHGG 482


>tr|B6NMD2|B6NMD2_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_232421 PE=4 SV=1
          Length = 674

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/88 (22%), Positives = 43/88 (48%)
 Frame = +3

Query: 57  IICNGSTILRISAADDFGAASKSRKNRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICK 236
           I+ + +T+  ++  +D G  ++ R ++   +  +++  K Y   P+H   H +S +H C 
Sbjct: 362 ILDDQTTLCCLAMFEDMGMINRWRIHKETLVKFVLMVKKGYRDPPYHNWYHAFSVSHFCY 421

Query: 237 CLQRGTWTNQCA*YNMLVSTYVGVSCLC 320
            L +    +Q      L + +  V+CLC
Sbjct: 422 LLYKNLRIDQLLTDVELFALF--VACLC 447


>tr|B6LET8|B6LET8_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_163666 PE=4 SV=1
          Length = 691

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/88 (22%), Positives = 43/88 (48%)
 Frame = +3

Query: 57  IICNGSTILRISAADDFGAASKSRKNRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICK 236
           I+ + +T+  ++  +D G  ++ R ++   +  +++  K Y   P+H   H +S +H C 
Sbjct: 379 ILDDQTTLCCLAMFEDMGMINRWRIHKETLVKFVLMVKKGYRDPPYHNWYHAFSVSHFCY 438

Query: 237 CLQRGTWTNQCA*YNMLVSTYVGVSCLC 320
            L +    +Q      L + +  V+CLC
Sbjct: 439 LLYKNLRIDQLLTDVELFALF--VACLC 464


>tr|B7Q529|B7Q529_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW011197 PE=4 SV=1
          Length = 1525

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 387 CVCGMERCWPSSFVVLCTHTNTCTDNSHPHMWIPACC 277
           C C    CW  S V     T  C ++SHP   +P  C
Sbjct: 551 CTCRRVACWAGSLVPCLRRTANCGEDSHPAQVVPLNC 587


>tr|A2DAY8|A2DAY8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_377970 PE=4 SV=1
          Length = 244

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 132 NRYPTLSVIIIFTKSYIIKPWHPKPHKYSTTHICKCL 242
           +++P  SV+ +   SYII+  + K  K   THICK L
Sbjct: 33  SQFPLFSVVQMIWSSYIIQQSYSKKKKTIVTHICKLL 69