BP912108 |
Clone id |
YMU001_000015_C04 |
Library |
YMU01 |
Length |
446 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000015_C04. |
Accession |
BP912108 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2799Contig1 |
Sequence |
GGTTAGTTGCTATTGATGGAGATCTATTTTGATATACTTTACACTTTGACTGTGATGGAC GTAAGTTACTTAAATGGCTTAGCCCTCCTCAGTCATTCCCTGCCCAGTGCTATCCTTGCA AAAGGTCTGTTTGTCGCTCCTGCCTCCTCTATGATTGAGTATGTTCCTCAAAAGGCTACC TCCTCGGGTCGATCATTCCTAGCCCAGTGCTCTCCTTGCAAATGGCCATTCTGCCTCCTC TTCTTGCCTTCCCCATACCTAGACCGTCGAGGAGCTTCGTCTTCGCTTGAGCTCTCAGCT ACCTCATTAGAAAGAGAGTTTCTTGTAAAAATGGCCTGCTTTGCTTCCATACTACCGAAC CCCGGGGTCCCTCCAGCCAATGAGGAATTTGTCTGTTTCATTGTGTTTCTCACCTCCGCA ACTCCAGCTGCACTCGTCTCATTCCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O29750 |
Definition |
sp|O29750|HMEB_ARCFU Hdr-like menaquinol oxidoreductase integral membrane subunit OS=Archaeoglobus fulgidus |
Align length |
80 |
Score (bit) |
33.9 |
E-value |
0.32 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9S9Q6 |
Definition |
tr|Q9S9Q6|Q9S9Q6_ARATH F26G16.5 protein OS=Arabidopsis thaliana |
Align length |
29 |
Score (bit) |
49.7 |
E-value |
7.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912108|Adiantum capillus-veneris mRNA, clone: YMU001_000015_C04. (446 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9S9Q6|Q9S9Q6_ARATH F26G16.5 protein OS=Arabidopsis thaliana ... 50 7e-05 tr|A9LNK9|A9LNK9_ARATH Cleavage and polyadenylation specificity ... 50 7e-05 tr|A5BGM3|A5BGM3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.009 tr|B4PGP5|B4PGP5_DROYA GE21359 OS=Drosophila yakuba GN=GE21359 P... 35 2.4 tr|A5DVS1|A5DVS1_LODEL Putative uncharacterized protein OS=Lodde... 34 4.1 tr|Q8A6V1|Q8A6V1_BACTN Galactose-binding-like protein OS=Bactero... 33 5.3 tr|Q5VRM6|Q5VRM6_ORYSJ Putative uncharacterized protein OSJNBa00... 33 7.0 tr|B2V1Q6|B2V1Q6_CLOBA Putative ATP-dependent RNA helicase RhlE ... 33 9.1 tr|A4E6U7|A4E6U7_9ACTN Translation initiation factor IF-2 OS=Col... 33 9.1 tr|Q18329|Q18329_CAEEL Protein C30F2.3, partially confirmed by t... 33 9.1 tr|Q16FC5|Q16FC5_AEDAE Putative uncharacterized protein OS=Aedes... 33 9.1 tr|B6KUT1|B6KUT1_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.1 tr|A5K8R6|A5K8R6_PLAVI Putative uncharacterized protein OS=Plasm... 33 9.1 tr|A4R4L4|A4R4L4_MAGGR Putative uncharacterized protein OS=Magna... 33 9.1
>tr|Q9S9Q6|Q9S9Q6_ARATH F26G16.5 protein OS=Arabidopsis thaliana GN=F26G16.5 PE=4 SV=1 Length = 335
Score = 49.7 bits (117), Expect = 7e-05 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = -1
Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234 NSL NE +ES EDEAPRRSR+GEGKKRR Sbjct: 307 NSLRNEESESEDEDEAPRRSRHGEGKKRR 335
>tr|A9LNK9|A9LNK9_ARATH Cleavage and polyadenylation specificity factor-YT521B OS=Arabidopsis thaliana GN=At1g30460 PE=2 SV=1 Length = 631
Score = 49.7 bits (117), Expect = 7e-05 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = -1
Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234 NSL NE +ES EDEAPRRSR+GEGKKRR Sbjct: 603 NSLRNEESESEDEDEAPRRSRHGEGKKRR 631
>tr|A5BGM3|A5BGM3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022201 PE=4 SV=1 Length = 299
Score = 42.7 bits (99), Expect = 0.009 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = -1
Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234 NS N+ ES SEDEAPRRSR+GEGKK+R Sbjct: 273 NSFRND--ESESEDEAPRRSRHGEGKKKR 299
>tr|B4PGP5|B4PGP5_DROYA GE21359 OS=Drosophila yakuba GN=GE21359 PE=4 SV=1 Length = 914
Score = 34.7 bits (78), Expect = 2.4 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -1
Query: 338 QAIFTRNSLSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQ 216 Q F+ ++ S + +SS +EAP+R R E KK +QN H+Q Sbjct: 709 QMRFSPDNHSARLVQSSRLEEAPKREREQEPKKEQQNTHIQ 749
>tr|A5DVS1|A5DVS1_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus GN=LELG_01457 PE=4 SV=1 Length = 510
Score = 33.9 bits (76), Expect = 4.1 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Frame = -1
Query: 416 EVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSL-SNEVAESSSEDEAPRRSRYGEGKK 240 EV+ T K+++SS + + ++ + + +S S+ ++SSS DE + S E K Sbjct: 165 EVKKTSKKSSSSSSSSSESDSDSDSSSSSSSSSSSDSDSDSDSSSSDEEEKDSEV-ENPK 223
Query: 239 RRQNGHLQGEHWARNDR--PEEVAF*GTYSIIEEAGAT 132 +R+N + + ++ + EE A + ++ EE GAT Sbjct: 224 KRKNEEVVADETSKKSKTEAEETAAPTSPAVAEEEGAT 261
>tr|Q8A6V1|Q8A6V1_BACTN Galactose-binding-like protein OS=Bacteroides thetaiotaomicron GN=BT_1775 PE=4 SV=1 Length = 570
Score = 33.5 bits (75), Expect = 5.3 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = -1
Query: 428 AGVAEVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRRSRYGE 249 AGVA +NT S+ AG ME K+ + ++ +V ++ ED A R +GE Sbjct: 460 AGVAPDKNTEWYVTSTEAGEW-----MEWKELPYAAGDITVKVCYAAKED-AKIRFDFGE 513
Query: 248 GKKRRQNG----HLQGEHWARND 192 G KRRQ H G W D Sbjct: 514 GTKRRQGPVVELHATGGEWVTVD 536
>tr|Q5VRM6|Q5VRM6_ORYSJ Putative uncharacterized protein OSJNBa0004I20.23 (Putative uncharacterized protein P0029D06.1) OS=Oryza sativa subsp. japonica GN=OSJNBa0004I20.23 PE=4 SV=1 Length = 824
Score = 33.1 bits (74), Expect = 7.0 Identities = 22/67 (32%), Positives = 31/67 (46%) Frame = -1
Query: 314 LSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEEAGA 135 LS+ AES+ D A R G++R + G+ WAR R E YSI+ G+ Sbjct: 724 LSDVAAESTPADRARRERMRPGGQRRGRRGNEAVTGWARRRRAER------YSIVTAGGS 777
Query: 134 TNRPFAR 114 T+ R Sbjct: 778 TSARLRR 784
>tr|B2V1Q6|B2V1Q6_CLOBA Putative ATP-dependent RNA helicase RhlE OS=Clostridium botulinum (strain Alaska E43 / type E3) GN=CLH_3339 PE=4 SV=1 Length = 432
Score = 32.7 bits (73), Expect = 9.1 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -1
Query: 410 RNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSED--EAPRRSRYGEGKKR 237 ++++K ++ P ++E ++ TR + A+ + D + P+R+ YGE ++ Sbjct: 354 KSSLKDIEKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWYGEKRRS 413
Query: 236 RQNGHLQGE 210 + NG QG+ Sbjct: 414 QGNGGQQGK 422
>tr|A4E6U7|A4E6U7_9ACTN Translation initiation factor IF-2 OS=Collinsella aerofaciens ATCC 25986 GN=COLAER_00124 PE=3 SV=1 Length = 904
Score = 32.7 bits (73), Expect = 9.1 Identities = 24/82 (29%), Positives = 39/82 (47%) Frame = -1
Query: 323 RNSLSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEE 144 R + SN VA + P + G+GKKR+ + + +H++R R E ++EE Sbjct: 221 RTNASNNVAAGM---DFPNPDKQGKGKKRKGGHNNEEDHYSRMAREAEEY--SREKVLEE 275
Query: 143 AGATNRPFARIALGRE*LRRAK 78 A A +R + GR R+ K Sbjct: 276 ARAAVEEASRESTGRRKKRKEK 297
>tr|Q18329|Q18329_CAEEL Protein C30F2.3, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=C30F2.3 PE=4 SV=2 Length = 403
Score = 32.7 bits (73), Expect = 9.1 Identities = 24/107 (22%), Positives = 43/107 (40%) Frame = -1
Query: 443 NETSAAGVAEVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRR 264 NE S + E+RN +QTN S +GG S +T +LSN+ S + + +R Sbjct: 58 NEYSQTYLEELRNYEQQTNPSSSGGVITSSSSVPANGYYTGPALSNDQQNSVNYQQIVQR 117
Query: 263 SRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEEAGATNRP 123 + + ++ G ++ + +YS + A P Sbjct: 118 NPSAYSNTGSSSSNIYGYNYNSGSSGSQATGSNSYSNNAQYSAPTNP 164
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