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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912110
Clone id YMU001_000015_C06
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACCAAAGGTGGAGTGGGCGTTGACAGAAACGCGATGAGAGGAACGACCAAAAGAGACCT
TGATCCTGATTACAGGTCCGGCATGGACAGCCTCTGCCTCTGGATCCCTCTTCTGGACGA
GTATTCCACAAGGACGGAGCTCCCACTCCTTAGAGGCGCCCTCGTTCTGCATTGGCTGTT
ATCAGCTGCATTTGCAGTCCATTGGCCCTTCAAAGCAAAGGCCCCTTTGATACTCATCCT
TGCTTCTTCAGAACTCCGACAGAAAGCCCCTTCACTTGGAAATCACAGAAAGCGTGTCGA
TTTGAGAGGCCCGCATAAGAGCTCTCTACTCAGCAGCTAGCTTCAGATGGA
■■Homology search results ■■ -
sp_hit_id Q5KMS0
Definition sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 OS=Cryptococcus neoformans
Align length 57
Score (bit) 33.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912110|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C06.
         (351 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 OS=Cryptococcus...    33   0.33 
sp|O15021|MAST4_HUMAN Microtubule-associated serine/threonine-pr...    31   2.2  
sp|Q811L6|MAST4_MOUSE Microtubule-associated serine/threonine-pr...    30   2.8  
sp|Q4QQV7|CH25H_RAT Cholesterol 25-hydroxylase OS=Rattus norvegi...    30   3.7  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    29   6.3  
sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig...    29   6.3  
sp|Q75BP2|EIF3J_ASHGO Eukaryotic translation initiation factor 3...    29   8.2  

>sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 OS=Cryptococcus
           neoformans GN=ATG2 PE=3 SV=1
          Length = 1935

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 199 DCKCS**QPMQNEGASKEWELRPCGILVQKRDPEAEAVHAGPVIRIKVSFGRSSHRV 29
           +C+C   +  +  G+ K W +RP G  + K    A     GPV+ ++   G  S  V
Sbjct: 646 ECECRDWREEKKTGSEKAWRVRPRGRGILKGGARATTEDEGPVVHVRQDLGSDSAAV 702


>sp|O15021|MAST4_HUMAN Microtubule-associated
           serine/threonine-protein kinase 4 OS=Homo sapiens
           GN=MAST4 PE=1 SV=3
          Length = 2626

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 62  DPDYRSGMDSLCLWIPLLDEYSTRTELPLLRGALVLHWLLSAAFAVH-WPFKAKAPLILI 238
           +PD  SG      +   L E   +     L GAL   +LL    A   WP  A+   ++ 
Sbjct: 138 NPDVASGPGKSLKYKRQLSEDGRQLRRGSLGGALTGRYLLPNPVAGQAWPASAETSNLVR 197

Query: 239 LASSELRQKAPSLGNHRKRVDLRGPHKSSL 328
           + S  L Q APSL    K + L  P + SL
Sbjct: 198 MRSQALGQSAPSLTASLKELSL--PRRGSL 225


>sp|Q811L6|MAST4_MOUSE Microtubule-associated
           serine/threonine-protein kinase 4 OS=Mus musculus
           GN=Mast4 PE=2 SV=2
          Length = 2618

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 62  DPDYRSGMDSLCLWIPLLDEYSTRTELPLLRGALVLHWLLSAAFAVH-WPFKAKAPLILI 238
           +PD   G+     +   L E   +     L GAL   +LL    A   WP  A+   ++ 
Sbjct: 136 NPDVACGLGKSLKYKRQLSEDGKQLRRGSLGGALTGRYLLPNPVAGQAWPASAETSNLVR 195

Query: 239 LASSELRQKAPSLGNHRKRVDLRGPHKSSL 328
           + S  L Q APSL    K + L  P + SL
Sbjct: 196 MRSQALGQSAPSLTASLKELSL--PRRGSL 223


>sp|Q4QQV7|CH25H_RAT Cholesterol 25-hydroxylase OS=Rattus norvegicus
           GN=Ch25h PE=2 SV=1
          Length = 298

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
 Frame = +2

Query: 83  MDSLCLWIPLLDEY--------STRTELPLLRGALVLHWLLSAAFAV---HWPFKAKAPL 229
           +D LC W+P+L  Y        S R  LP L   L L+  L   F V   HW   A++P 
Sbjct: 58  LDVLCPWVPILRRYKIHPDFSPSVRQLLPCL--GLTLYQHLVFVFPVTLMHW---ARSPA 112

Query: 230 ILILASSELRQ 262
           +L   + EL Q
Sbjct: 113 LLPREAPELSQ 123


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
            OS=Homo sapiens GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = -1

Query: 270  GAFCRSSEEARMSIKGAFALKGQWTANAADNSQCRTRAPL----RSGSSVLVEYSSRRGI 103
            G   RS     + +K + + + +  ++++ +S+ +TR PL    RSGSS  V+  SR   
Sbjct: 1534 GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSP 1593

Query: 102  QRQR 91
            +R R
Sbjct: 1594 RRSR 1597


>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1
            PE=1 SV=2
          Length = 13100

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85   GQPLPLDPSSGRVFHKDGAPTP 150
            G+P+P D SSGR   KDG+P P
Sbjct: 7705 GEPIPTD-SSGRPISKDGSPLP 7725



 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85   GQPLPLDPSSGRVFHKDGAPTP 150
            G+P+P D SSGR   KDG+P P
Sbjct: 8479 GEPIPTD-SSGRPISKDGSPLP 8499



 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85    GQPLPLDPSSGRVFHKDGAPTP 150
             G+P+P D SSGR   KDG+P P
Sbjct: 10242 GEPIPTD-SSGRPISKDGSPLP 10262


>sp|Q75BP2|EIF3J_ASHGO Eukaryotic translation initiation factor 3
           subunit J OS=Ashbya gossypii GN=HCR1 PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 181 ISCICSPLALQSKGPFDTHPCFFRTPTESPF 273
           ++ +  P AL  + PF++HP F    T+S F
Sbjct: 121 LAALSRPAALTKQTPFESHPLFSEAETKSDF 151
tr_hit_id A9SAE3
Definition tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 66.6
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912110|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C06.
         (351 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza br...    57   6e-07
tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays P...    55   2e-06
tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    54   3e-06
tr|A7QVK4|A7QVK4_VITVI Chromosome chr16 scaffold_189, whole geno...    54   3e-06
tr|A5BKZ8|A5BKZ8_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    54   4e-06
tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    54   4e-06
tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea...    54   4e-06
tr|Q5N9K2|Q5N9K2_ORYSJ cDNA clone:J023047C12, full insert sequen...    54   5e-06
tr|B8ABN1|B8ABN1_ORYSI Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|Q651M9|Q651M9_ORYSJ Os09g0524800 protein OS=Oryza sativa subs...    52   1e-05
tr|B8BDL2|B8BDL2_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|A3C0R9|A3C0R9_ORYSJ Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|Q8RX71|Q8RX71_ARATH At3g51780/ORF3 OS=Arabidopsis thaliana PE...    52   2e-05
tr|Q8LDA0|Q8LDA0_ARATH Putative uncharacterized protein OS=Arabi...    52   2e-05
tr|O65021|O65021_ARATH Putative uncharacterized protein OS=Arabi...    52   2e-05
tr|Q6ZFW2|Q6ZFW2_ORYSJ Putative BAG domain containing protein OS...    50   4e-05
tr|Q0J3Y2|Q0J3Y2_ORYSJ Os08g0546100 protein OS=Oryza sativa subs...    50   4e-05
tr|A3BVF7|A3BVF7_ORYSJ Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A2YXR5|A2YXR5_ORYSI Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A7NYB8|A7NYB8_VITVI Chromosome chr6 scaffold_3, whole genome ...    49   9e-05
tr|B6TTR9|B6TTR9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    49   1e-04
tr|Q9FIS8|Q9FIS8_ARATH Similarity to unknown protein OS=Arabidop...    48   3e-04
tr|Q8LEP8|Q8LEP8_ARATH Putative uncharacterized protein OS=Arabi...    48   3e-04
tr|Q3E872|Q3E872_ARATH Uncharacterized protein At5g62100.2 (Puta...    48   3e-04
tr|B3H4L7|B3H4L7_ARATH Uncharacterized protein At5g62100.3 OS=Ar...    48   3e-04
tr|A9RFF9|A9RFF9_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|A7Q1A1|A7Q1A1_VITVI Chromosome chr10 scaffold_43, whole genom...    47   4e-04

>tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126710 PE=4 SV=1
          Length = 259

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = -3

Query: 148 EWELRPCGILVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFG 2
           EWE+RP G+LVQKRDP+A AV  GP+++IKVS G   H VSV AHSTFG
Sbjct: 13  EWEMRPGGMLVQKRDPDA-AVATGPLVKIKVSHGLFGHDVSVPAHSTFG 60


>tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza
           brachyantha PE=4 SV=1
          Length = 332

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = -3

Query: 190 CS**QPMQNEGASKEWELRPCGILVQKRDPEAEAVHAG-PVIRIKVSFGRSSHRVSVNAH 14
           C+  QP        EWE+RP G+LVQKR PE++A  A  P IR+KV F    H + VN+ 
Sbjct: 20  CTPVQPAAAAAKEDEWEVRPGGMLVQKRSPESDAPAAPVPTIRVKVKFNGVYHEIYVNSQ 79

Query: 13  STFG 2
           ++FG
Sbjct: 80  ASFG 83


>tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 259

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 30/52 (57%), Positives = 36/52 (69%)
 Frame = -3

Query: 157 ASKEWELRPCGILVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFG 2
           A  EWE+RP G+LVQ+RD EA    AGPVIRI+VS G +   V V A +TFG
Sbjct: 11  AEGEWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFG 58


>tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays PE=2
           SV=1
          Length = 259

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 30/52 (57%), Positives = 36/52 (69%)
 Frame = -3

Query: 157 ASKEWELRPCGILVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFG 2
           A  EWE+RP G+LVQ+RD EA    AGPVIRI+VS G +   V V A +TFG
Sbjct: 11  AEGEWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFG 58


>tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 148 EWELRPCGILVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFG 2
           EWE+RP G+LVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGMYHEIYINSQASFG 86


>tr|A7QVK4|A7QVK4_VITVI Chromosome chr16 scaffold_189, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007399001
           PE=4 SV=1
          Length = 343

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = -3

Query: 163 EGASKEWELRPCGILVQKRDPEAEAVHA-GPVIRIKVSFGRSSHRVSVNAHSTFG 2
           E    EWELRP G+LVQ+RDP+++      P IR++V FG   H + +++ +TFG
Sbjct: 24  ESGPVEWELRPGGMLVQRRDPDSDRSSVPAPTIRVRVKFGSIYHEIYISSQATFG 78


>tr|A5BKZ8|A5BKZ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023247 PE=4 SV=1
          Length = 343

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = -3

Query: 163 EGASKEWELRPCGILVQKRDPEAEAVHA-GPVIRIKVSFGRSSHRVSVNAHSTFG 2
           E    EWELRP G+LVQ+RDP+++      P IR++V FG   H + +++ +TFG
Sbjct: 24  ESGPVEWELRPGGMLVQRRDPDSDRSSVPAPTIRVRVKFGSIYHEIYISSQATFG 78


>tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 148 EWELRPCGILVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFG 2
           EWE+RP G+LVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFG 86


>tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 336

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 148 EWELRPCGILVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFG 2
           EWE+RP G+LVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG
Sbjct: 38  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFG 88


>tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 254

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = -3

Query: 154 SKEWELRPCGILVQKRDPEAEAVHAG-PVIRIKVSFGRSSHRVSVNAHSTFG 2
           S +WE+RP G+LVQ+RDP+A+   A  P I+++V+ G S H VSV+  +TFG
Sbjct: 29  SIDWEVRPGGMLVQRRDPDADQESAPCPKIKVRVTHGSSLHEVSVSMQATFG 80