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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912122
Clone id YMU001_000015_D04
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTACCTGCAGGTACTCCCATATATTGTAACCAGAGTGTGTAATCATTGTTACTGCTTGAA
TAACAGTTAGAGCTCTTTCAATGTACACGATCTTATCTTTGAGAGTTGGGTGTTTGAGAG
TTCGGCGAATTTCTTTCTCAAGCAATTCGGGAGCAAGATGCATAACTGCATGGCCTTGGC
GTAAAAGAGATTTTTCAANGCTCACGATCTTGAATGAGAATCACGAAGTTTCTGATGCTC
AACTTGCTAAATTGGCAAAGCCAATTTCTTATGACCTCTTCACGAAAGCCCACTGCATCG
ACAAGAATAACTGTGCCGTTTTCTTCAAATGACGGTACAATTGTTTTCACACCCTGAGCA
TTCTCTATAAGCCTACCCTGTTTGACCTCGTGGAAACAAAAATCATACCTCTTCAATTGG
TCCAAAGGCTTCATCTCCCAGGAATTTAGTCCTGACACATTTTCATTTCCTATAAGAGTA
GAATCTGGTCCAGCTTCCTTCTTTGTATTTACACCCTTGTCCCTGTATGAGACACTCAGA
GCCT
■■Homology search results ■■ -
sp_hit_id Q2G5Y6
Definition sp|Q2G5Y6|NUOD_NOVAD NADH-quinone oxidoreductase subunit D OS=Novosphingobium aromaticivorans (strain DSM 12444)
Align length 58
Score (bit) 33.1
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912122|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_D04.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2G5Y6|NUOD_NOVAD NADH-quinone oxidoreductase subunit D OS=No...    33   0.89 
sp|P35524|CLCN1_RAT Chloride channel protein, skeletal muscle OS...    33   0.90 
sp|A5VAM0|NUOD_SPHWW NADH-quinone oxidoreductase subunit D OS=Sp...    33   1.2  
sp|Q1GTK0|NUOD_SPHAL NADH-quinone oxidoreductase subunit D OS=Sp...    32   2.0  
sp|Q969A8|HXK_TOXGO Hexokinase OS=Toxoplasma gondii GN=HXK PE=2 ...    32   2.0  
sp|P40082|YEW5_YEAST Putative uncharacterized protein YER135C OS...    32   2.6  
sp|A2PYL6|HXK2_HORSE Hexokinase-2 OS=Equus caballus GN=HK2 PE=2 ...    32   2.6  
sp|A2PYL7|HXK2_EQUZE Hexokinase-2 OS=Equus zebra GN=HK2 PE=2 SV=1      32   2.6  
sp|A2PYL8|HXK2_EQUGR Hexokinase-2 OS=Equus grevyi GN=HK2 PE=2 SV=1     32   2.6  
sp|Q1W674|HXK2_PIG Hexokinase-2 OS=Sus scrofa GN=HK2 PE=2 SV=1         31   3.4  
sp|Q9N6P4|FZO_DROSI Transmembrane GTPase fzo (Fragment) OS=Droso...    30   7.6  
sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle ...    30   9.9  

>sp|Q2G5Y6|NUOD_NOVAD NADH-quinone oxidoreductase subunit D
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=nuoD PE=3 SV=1
          Length = 403

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   YLQVLPYIVTRVCNHCYCLNNS*SSFNVHDLIFESWVF---ESSANFFLKQFGSKMHN 166
           YL+VL   +TR+CNH   LN      +V  +    W+F   E   NFF +  G++MH+
Sbjct: 108 YLRVLFAELTRICNH--MLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHS 163


>sp|P35524|CLCN1_RAT Chloride channel protein, skeletal muscle
           OS=Rattus norvegicus GN=Clcn1 PE=2 SV=1
          Length = 994

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 518 KGVNTKKEAGPDST-LIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIENAQGVKT 342
           K  +TKK+   DST L+ N +   + +WE + L Q   +DFC  +    +L+E     KT
Sbjct: 784 KAHSTKKKITQDSTDLVDNMSPEEIEAWEREQLSQPVCFDFCCIDQSPFQLVEQTTLHKT 843


>sp|A5VAM0|NUOD_SPHWW NADH-quinone oxidoreductase subunit D
           OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
           10273) GN=nuoD PE=3 SV=1
          Length = 406

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 2   YLQVLPYIVTRVCNHCYCLNNS*SSFNVHDLIFESWVF---ESSANFFLKQFGSKMH 163
           YL+VL   +TR+CNH   LN      +V  +    W+F   E   NFF +  G++MH
Sbjct: 111 YLRVLFAELTRICNH--MLNIGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMH 165


>sp|Q1GTK0|NUOD_SPHAL NADH-quinone oxidoreductase subunit D
           OS=Sphingopyxis alaskensis GN=nuoD PE=3 SV=2
          Length = 405

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 2   YLQVLPYIVTRVCNHCYCLNNS*SSFNVHDLIFESWVF---ESSANFFLKQFGSKMHN 166
           YL+ +   +TR+CNH   LN      +V  +    WVF   E   NFF +  G++MH+
Sbjct: 110 YLRTMFAELTRICNH--MLNIGSHVMDVGAMTPNLWVFELREDCLNFFERASGARMHS 165


>sp|Q969A8|HXK_TOXGO Hexokinase OS=Toxoplasma gondii GN=HXK PE=2
           SV=1
          Length = 468

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 P*AFSISLPCLTSWKQKSYLFNWSKGFISQEFSPD 456
           P  F+ S PC  +    S+L  W+KGF +   +PD
Sbjct: 163 PVGFTFSFPCAQAALNSSFLIEWTKGFETGRENPD 197


>sp|P40082|YEW5_YEAST Putative uncharacterized protein YER135C
           OS=Saccharomyces cerevisiae GN=YER135C PE=5 SV=1
          Length = 130

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 361 FSISLPCLTSWKQ--KSYLFNWSKGFISQEFSPDTFSFPIR 477
           F++ L CL SWK+  +S  + W K   ++  SP+T   PIR
Sbjct: 61  FTLFLICLASWKEGNRSCRYKWQKFVCNKLNSPETNFVPIR 101


>sp|A2PYL6|HXK2_HORSE Hexokinase-2 OS=Equus caballus GN=HK2 PE=2
           SV=1
          Length = 917

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 352 P*AFSISLPCLTSWKQKSYLFNWSKGFISQ 441
           P  F+ S PC+ +   +S+L +W+KGF S+
Sbjct: 149 PLGFTFSFPCIQTKLDESFLVSWTKGFKSR 178


>sp|A2PYL7|HXK2_EQUZE Hexokinase-2 OS=Equus zebra GN=HK2 PE=2 SV=1
          Length = 917

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 352 P*AFSISLPCLTSWKQKSYLFNWSKGFISQ 441
           P  F+ S PC+ +   +S+L +W+KGF S+
Sbjct: 149 PLGFTFSFPCIQTKLDESFLVSWTKGFKSR 178


>sp|A2PYL8|HXK2_EQUGR Hexokinase-2 OS=Equus grevyi GN=HK2 PE=2 SV=1
          Length = 917

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 352 P*AFSISLPCLTSWKQKSYLFNWSKGFISQ 441
           P  F+ S PC+ +   +S+L +W+KGF S+
Sbjct: 149 PLGFTFSFPCIQTKLDESFLVSWTKGFKSR 178


>sp|Q1W674|HXK2_PIG Hexokinase-2 OS=Sus scrofa GN=HK2 PE=2 SV=1
          Length = 917

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 352 P*AFSISLPCLTSWKQKSYLFNWSKGFIS 438
           P  F+ S PC+ +   +S+L +W+KGF S
Sbjct: 149 PLGFTFSFPCIQTKLDESFLVSWTKGFKS 177
tr_hit_id Q9FMN8
Definition tr|Q9FMN8|Q9FMN8_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 (At5g12260/MXC9_22) OS=Arabidopsis thaliana
Align length 109
Score (bit) 99.4
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912122|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_D04.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FMN8|Q9FMN8_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ...    99   1e-19
tr|A4Q7Q3|A4Q7Q3_MEDTR Sugar transporter superfamily OS=Medicago...    97   4e-19
tr|A2WNJ8|A2WNJ8_ORYSI Putative uncharacterized protein OS=Oryza...    97   4e-19
tr|Q9ARZ1|Q9ARZ1_ORYSJ OSJNBa0004B13.7 protein (Putative unchara...    97   5e-19
tr|A7PS85|A7PS85_VITVI Chromosome chr14 scaffold_27, whole genom...    94   4e-18
tr|A9TT64|A9TT64_PHYPA Predicted protein (Fragment) OS=Physcomit...    84   4e-15
tr|Q9M659|Q9M659_ARATH MOM OS=Arabidopsis thaliana PE=2 SV=1           35   3.3  
tr|Q9M658|Q9M658_ARATH MOM OS=Arabidopsis thaliana GN=At1g08060 ...    35   3.3  
tr|Q9LN02|Q9LN02_ARATH T6D22.14 OS=Arabidopsis thaliana PE=4 SV=1      35   3.3  
tr|B4N9F8|B4N9F8_DROWI GK11611 OS=Drosophila willistoni GN=GK116...    34   4.4  
tr|A3WBY5|A3WBY5_9SPHN NADH dehydrogenase delta subunit OS=Eryth...    34   4.4  
tr|A5P7T7|A5P7T7_9SPHN NADH-quinone oxidoreductase chain D OS=Er...    34   5.8  
tr|Q7TT75|Q7TT75_RAT Chloride channel isoform 4 (Fragment) OS=Ra...    33   9.7  
tr|Q7TT74|Q7TT74_RAT Chloride channel isoform 5 (Fragment) OS=Ra...    33   9.7  
tr|Q6A297|Q6A297_HAEIN DNA topoisomerase OS=Haemophilus influenz...    33   9.7  
tr|A5BYL1|A5BYL1_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  

>tr|Q9FMN8|Q9FMN8_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9
           (At5g12260/MXC9_22) OS=Arabidopsis thaliana GN=At5g12260
           PE=2 SV=1
          Length = 624

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 51/109 (46%), Positives = 71/109 (65%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIE 363
           ALSVS+RD GVN  + AGPDS L+   ++S  +S +++PL  LK YDFCF EV  GR++ 
Sbjct: 316 ALSVSHRDAGVNYGRTAGPDSQLLNKSSLSS-DSLKLQPLSNLKWYDFCFSEVVPGRVVR 374

Query: 362 NAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVIL 216
           N   + TI+PS +   T+ILV   G  +  IRN LC F KL+I+N + +
Sbjct: 375 NLNELGTILPSVQREKTIILVSLYGADKMFIRNLLCHFEKLNIQNHIFI 423


>tr|A4Q7Q3|A4Q7Q3_MEDTR Sugar transporter superfamily OS=Medicago
           truncatula GN=MtrDRAFT_AC183502g15v2 PE=4 SV=1
          Length = 622

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 48/109 (44%), Positives = 71/109 (65%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIE 363
           ALSVS+RD GVN  K AGPDS L+   ++   N  EM+PL  LK +DFCF EV  GR + 
Sbjct: 300 ALSVSHRDAGVNYGKTAGPDSQLLEERSLD-FNILEMQPLSSLKWFDFCFREVLPGRFVR 358

Query: 362 NAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVIL 216
           N + +  ++ S ++  +V LV+ +G  + V RN LC F +L+IRN++++
Sbjct: 359 NLEELGALLHSMQKQDSVFLVNLLGVSDAVARNLLCHFERLNIRNYILM 407


>tr|A2WNJ8|A2WNJ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01427 PE=4 SV=1
          Length = 609

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 45/114 (39%), Positives = 70/114 (61%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIE 363
           ALSVS+RD GVN  +  GPDSTL+  +N+   N WE++PL++LK YDFCF EV  GR+I 
Sbjct: 286 ALSVSHRDAGVNYGRSVGPDSTLLDGKNLD-FNLWELQPLNKLKWYDFCFAEVLPGRVIR 344

Query: 362 NAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVILIQDRE 201
               + +++ S +    V+L+      + + RN +C   K  +RN++ L+ + E
Sbjct: 345 KFSELGSVLKSVQLENNVVLISLYSLEQRIARNLICHLEKSGMRNYIFLVDNTE 398


>tr|Q9ARZ1|Q9ARZ1_ORYSJ OSJNBa0004B13.7 protein (Putative
           uncharacterized protein) (Os01g0283000 protein)
           (Putative uncharacterized protein P0581F09.17) OS=Oryza
           sativa subsp. japonica GN=OSJNBa0004B13.7 PE=4 SV=1
          Length = 609

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 45/114 (39%), Positives = 70/114 (61%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIE 363
           ALSVS+RD GVN  +  GPDSTL+  +N+   N WE++PL++LK YDFCF EV  GR+I 
Sbjct: 286 ALSVSHRDAGVNYGRSVGPDSTLLDGKNLD-FNLWELQPLNKLKWYDFCFAEVLPGRVIR 344

Query: 362 NAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVILIQDRE 201
               + +++ S +    V+L+      + + RN +C   K  +RN++ L+ + E
Sbjct: 345 KFSELGSVLKSVQLENNVVLISLYSLEQRIARNLICYLEKSGMRNYIFLVDNTE 398


>tr|A7PS85|A7PS85_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022805001
           PE=4 SV=1
          Length = 633

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 48/109 (44%), Positives = 72/109 (66%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMKPLDQLKRYDFCFHEVKQGRLIE 363
           ALSVS+RD GVN  K AGPDS L+ +E+   ++  EM+PL +LK YDFCF EV  G ++ 
Sbjct: 305 ALSVSHRDAGVNYGKTAGPDSYLL-DESSLDIDLLEMQPLTKLKWYDFCFKEVHPGTVVR 363

Query: 362 NAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVIL 216
           + + + +++ S ++  T+ILV   G  E VIRN LC F   +I+N++ +
Sbjct: 364 SFEELGSVLHSVQKQDTIILVSLFGASERVIRNLLCHFESFNIQNYIFM 412


>tr|A9TT64|A9TT64_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_2298 PE=4 SV=1
          Length = 379

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = -3

Query: 542 ALSVSYRDKGVNTKKEAGPDSTLIGNENVSGLNS-WEMKPLDQLKRYDFCFHEVKQGRLI 366
           ALSVS+R+ G+N  K  GPDS LI    V      W M P   L ++DFCF  ++   + 
Sbjct: 247 ALSVSHREPGLNYNKSVGPDSQLIDKVEVGNDTMLWVMSPSKTLPQFDFCFRGMQSWSVA 306

Query: 365 ENAQGVKTIVPSFEENGTVILVDAVGFREEVIRNWLCQFSKLSIRNFVILIQDRE 201
            +   +  ++ + E N +V+LV+ +G    ++RNWLC   +L +R F+IL  D E
Sbjct: 307 TSLAELSPMLAAMEMNMSVLLVNTIGVNAVLVRNWLCHMERLGLRKFIILGDDNE 361


>tr|Q9M659|Q9M659_ARATH MOM OS=Arabidopsis thaliana PE=2 SV=1
          Length = 2001

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = -3

Query: 530  SYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMK---PLDQLKRYDFC--FHEVKQGRLI 366
            ++ D  VN +   G D+T +   ++SG ++ EM+   P  Q++R  F   FHE      +
Sbjct: 1646 NHPDTAVNIE---GLDNTSVAEPHISGSDACEMEISEPGPQVERSTFANLFHEGG----V 1698

Query: 365  ENAQGVKTIVPSFEENGT 312
            E++ GV  +VPS   NGT
Sbjct: 1699 EHSAGVTALVPSLLNNGT 1716


>tr|Q9M658|Q9M658_ARATH MOM OS=Arabidopsis thaliana GN=At1g08060 PE=4
            SV=1
          Length = 2001

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = -3

Query: 530  SYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMK---PLDQLKRYDFC--FHEVKQGRLI 366
            ++ D  VN +   G D+T +   ++SG ++ EM+   P  Q++R  F   FHE      +
Sbjct: 1646 NHPDTAVNIE---GLDNTSVAEPHISGSDACEMEISEPGPQVERSTFANLFHEGG----V 1698

Query: 365  ENAQGVKTIVPSFEENGT 312
            E++ GV  +VPS   NGT
Sbjct: 1699 EHSAGVTALVPSLLNNGT 1716


>tr|Q9LN02|Q9LN02_ARATH T6D22.14 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 2254

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = -3

Query: 530  SYRDKGVNTKKEAGPDSTLIGNENVSGLNSWEMK---PLDQLKRYDFC--FHEVKQGRLI 366
            ++ D  VN +   G D+T +   ++SG ++ EM+   P  Q++R  F   FHE      +
Sbjct: 1879 NHPDTAVNIE---GLDNTSVAEPHISGSDACEMEISEPGPQVERSTFANLFHEGG----V 1931

Query: 365  ENAQGVKTIVPSFEENGT 312
            E++ GV  +VPS   NGT
Sbjct: 1932 EHSAGVTALVPSLLNNGT 1949


>tr|B4N9F8|B4N9F8_DROWI GK11611 OS=Drosophila willistoni GN=GK11611
           PE=4 SV=1
          Length = 117

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +3

Query: 63  TVRALSMYTILSLRVGCLRVRRISFSSNSGARCITAWPWRKRDFSXLTILNENHEVSDAQ 242
           T+  L+   IL LR+  L  +R+     SGA C+T   WR++  + LT   +  E   A 
Sbjct: 49  TLLELNGVDILGLRISEL-AKRLQEHWQSGAECVTMMMWRQQSTANLTTAEDAAEAEHAV 107

Query: 243 LAKLAKPIS 269
           +++L + I+
Sbjct: 108 VSELMQRIA 116