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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912132
Clone id YMU001_000015_E03
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCTGCATTGTAATGCTTGCAAGGGTTGCACCCAAGGCCCGTTCGATGACGGTTGACAC
ACGTTTGCTTTGAAATTGAGTCAAAGGATCATTGAGTTGAGAGCTTCATCTCTCGAAAGT
ATAAGTAGGGAAGAAAGCTATAAAGTTCCATCGAGTTTGAGATTCTGAATGAAGCGTGGG
AATAGTGTCCCATCTCCGATCCATGTGCTTATAAAGATTTCCCAATCGACTAAAAATTCC
ACTCCCGAGTACTGTGTCAATCTTCTTACGTCGGAAGATGAAGGAGTATTTATGTCTAAA
CAACATGATTTCTTGTGTTCCTTCTTGATACATCAAAAGCTCG
■■Homology search results ■■ -
sp_hit_id Q4J8E8
Definition sp|Q4J8E8|CARB_SULAC Carbamoyl-phosphate synthase large chain OS=Sulfolobus acidocaldarius
Align length 79
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912132|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_E03.
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4J8E8|CARB_SULAC Carbamoyl-phosphate synthase large chain OS...    30   4.9  
sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS...    29   8.3  

>sp|Q4J8E8|CARB_SULAC Carbamoyl-phosphate synthase large chain
            OS=Sulfolobus acidocaldarius GN=carB PE=3 SV=1
          Length = 1052

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +1

Query: 73   KLSQRIIELRASSLESISREESYKVPSSLRF*MKRGNSVPSPIHVLIKISQSTKNSTPEY 252
            KLS   +     S+ SISRE + K P +++F +K  N  P  I + ++ S+S   S+   
Sbjct: 794  KLSPETVHKMKESIHSISRELNIKGPFNVQFVVK--NGTPYIIEMNLRASRSMPFSSKVV 851

Query: 253  CVNLLTSEDEGVFMSKQHD 309
              N++     GV      D
Sbjct: 852  GKNIIDLALTGVIKGFDFD 870


>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial
           OS=Xenopus laevis GN=mrpl45 PE=2 SV=1
          Length = 309

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 330 YQEGTQEIMLFRHKYSFIFRRKKIDTVLGSGIFSRL--GNLYKHMDRRWDTIPTLHS 166
           + E  QEI +  HKY   F R K+ T++    +  +  GN Y+ +  RW  + ++ +
Sbjct: 137 FPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMVRGNRYRTI--RWSFVESIEA 191
tr_hit_id Q5N3E1
Definition tr|Q5N3E1|Q5N3E1_SYNP6 Putative uncharacterized protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Align length 36
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912132|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_E03.
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5N3E1|Q5N3E1_SYNP6 Putative uncharacterized protein OS=Synec...    35   1.9  
tr|Q31QV5|Q31QV5_SYNE7 Putative uncharacterized protein OS=Synec...    35   1.9  
tr|Q3M124|Q3M124_ANAVT Putative uncharacterized protein OS=Anaba...    33   5.4  

>tr|Q5N3E1|Q5N3E1_SYNP6 Putative uncharacterized protein
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=syc0989_d PE=4 SV=1
          Length = 117

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +1

Query: 232 KNSTPEYCVNLLTSEDEGVFMSKQHDFLCSFLIHQK 339
           +N TP+  +NL++ +D+ + ++K  DF+ SFL  QK
Sbjct: 33  QNKTPDSTINLISLQDKRIVITKDSDFVNSFLASQK 68


>tr|Q31QV5|Q31QV5_SYNE7 Putative uncharacterized protein
           OS=Synechococcus elongatus (strain PCC 7942)
           GN=Synpcc7942_0532 PE=4 SV=1
          Length = 117

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +1

Query: 232 KNSTPEYCVNLLTSEDEGVFMSKQHDFLCSFLIHQK 339
           +N TP+  +NL++ +D+ + ++K  DF+ SFL  QK
Sbjct: 33  QNKTPDSTINLISLQDKRIVITKDSDFVNSFLASQK 68


>tr|Q3M124|Q3M124_ANAVT Putative uncharacterized protein OS=Anabaena
            variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_C0234
            PE=4 SV=1
          Length = 1853

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 273  RRKKIDTVLGSGIFSRLGNLYKHMDRRWDTI-PTLHSESQTRWNFIAF 133
            R ++I   +G G+  +LG L+    R WDT+  TL  ES   + F  F
Sbjct: 1153 RNREIAQEIGKGLGEKLGELFHQSHRNWDTLCQTLKIESADEYTFWEF 1200