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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912138
Clone id YMU001_000015_E09
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAACAGATTGCTTAGGAAAGTTGCATAGGCTACAGTTCCTCATGAAAAGTGGAAGAGGTT
CTTCAGCGTGCAACAGTCCTGAGAACTCTCAAACGTGGATGAGGTGCAGGGAATGTCATG
GACAAGGAGGACCATCTTGGTGAAACGTGTTTGTGCAACAAAGTCTGTGCCTGATGAAGT
GTACTTCAGTAAGGCGAGCGGGAAATGAGGCTGTATAAAAGCCAGAGTTATCAGTGTGAA
CCTGCTTGCCTCTCTGATGGTTTGAGTAAGTTTTCAGGGTCCGTCATTTCGGAACGCGCT
TTCATTCCAGAGTCTGCCCGGGTAATCTGTGAAAGGCATGAAATAAGCTTCATACCTGTG
ACAAGAGTGGTCATGGCCGACAAAAAGAAGTCGTTTAAGTTCTACATTTTGGGCCTCGGC
AAAGAGATCTATGCAGAGGAGTATCCTGTGAGTCTTTTTTCTCTTTGTGGAGTCTGCAAT
ATTTGCTGAACTGAAGAAGCAAAATG
■■Homology search results ■■ -
sp_hit_id Q9Y2M2
Definition sp|Q9Y2M2|CC032_HUMAN Uncharacterized protein C3orf32 OS=Homo sapiens
Align length 55
Score (bit) 38.5
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912138|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_E09.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y2M2|CC032_HUMAN Uncharacterized protein C3orf32 OS=Homo sa...    39   0.018
sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3...    30   4.9  
sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxo...    30   8.4  

>sp|Q9Y2M2|CC032_HUMAN Uncharacterized protein C3orf32 OS=Homo
           sapiens GN=C3orf32 PE=2 SV=1
          Length = 353

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 283 VISERAFIPESARVICERHEISFIPVTRVVMADKKKSFKFYILGLGKEIYAEEYP 447
           +    A +   ARV+ +R  I  IP+T V    + K++ +YI G   ++YA +YP
Sbjct: 289 IAEHSAALASRARVLQQRQTIELIPLTEVHYWYQGKTYVYYIYGTDHQVYAVDYP 343


>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3
           OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3
          Length = 892

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 310 ESARVICERHEISFIPVTRVVMADKKKSFKFYIL 411
           ++AR +  +HEISF  VT   M + +  +KF ++
Sbjct: 351 KTARAVIRKHEISFEEVTTKTMRENQTQYKFNVM 384


>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor
           OS=Myxococcus xanthus GN=mfd PE=3 SV=1
          Length = 1201

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 262 LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMADKKK 390
           L  F  ++ S RAF P+S R +    E+  +P   V++ D+ +
Sbjct: 217 LEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETR 259
tr_hit_id A9NV14
Definition tr|A9NV14|A9NV14_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 91
Score (bit) 96.3
E-value 7.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912138|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_E09.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NV14|A9NV14_PICSI Putative uncharacterized protein OS=Picea...    96   7e-19
tr|Q9SH87|Q9SH87_ARATH Putative uncharacterized protein At2g3800...    94   4e-18
tr|A7PNZ2|A7PNZ2_VITVI Chromosome chr8 scaffold_23, whole genome...    92   1e-17
tr|B4FPR2|B4FPR2_MAIZE Putative uncharacterized protein OS=Zea m...    84   3e-15
tr|A5BQ55|A5BQ55_VITVI Putative uncharacterized protein OS=Vitis...    84   3e-15
tr|Q5W6X4|Q5W6X4_ORYSJ Os05g0316200 protein OS=Oryza sativa subs...    80   6e-14
tr|B8AWK5|B8AWK5_ORYSI Putative uncharacterized protein OS=Oryza...    80   6e-14
tr|Q05AJ0|Q05AJ0_DANRE LOC556397 protein (Fragment) OS=Danio rer...    45   0.003
tr|A9V5J5|A9V5J5_MONBE Predicted protein OS=Monosiga brevicollis...    44   0.004
tr|A8E7M7|A8E7M7_DANRE Novel protein (Fragment) OS=Danio rerio G...    43   0.008
tr|B6P5T1|B6P5T1_BRAFL Putative uncharacterized protein OS=Branc...    39   0.11 
tr|B6L5X3|B6L5X3_BRAFL Putative uncharacterized protein OS=Branc...    39   0.11 
tr|B6L5Q3|B6L5Q3_BRAFL Putative uncharacterized protein OS=Branc...    39   0.11 
tr|B7Z6E3|B7Z6E3_HUMAN cDNA FLJ55389, highly similar to Homo sap...    39   0.19 
tr|Q08C76|Q08C76_DANRE Zgc:153440 OS=Danio rerio GN=zgc:153440 P...    37   0.54 
tr|Q1RLR7|Q1RLR7_DANRE Zgc:136895 OS=Danio rerio GN=zgc:136895 P...    37   0.71 
tr|Q1LUM1|Q1LUM1_DANRE Novel protein OS=Danio rerio GN=DKEY-188L...    37   0.71 
tr|A8E5M7|A8E5M7_DANRE Zgc:136895 protein OS=Danio rerio GN=zgc:...    37   0.71 
tr|B6A8S9|B6A8S9_ECOLX LicD-family phosphotransferase OS=Escheri...    35   2.1  
tr|Q66JD4|Q66JD4_XENTR LOC493204 protein (Fragment) OS=Xenopus t...    35   2.7  
tr|A5BE49|A5BE49_VITVI Putative uncharacterized protein OS=Vitis...    34   3.5  
tr|A7S166|A7S166_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   3.5  
tr|A7P0V0|A7P0V0_VITVI Chromosome chr19 scaffold_4, whole genome...    33   6.0  
tr|B2BHW6|B2BHW6_9VIRU Structural polyprotein OS=Black queen cel...    33   7.8  
tr|A5AXF5|A5AXF5_VITVI Putative uncharacterized protein OS=Vitis...    33   7.8  

>tr|A9NV14|A9NV14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 429

 Score = 96.3 bits (238), Expect = 7e-19
 Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L   Q+YQC+P   SD   L+KFS  +I++RA +P +ARVICERH+I+ +PVTRV+M 
Sbjct: 331 VQLCNIQAYQCKPTNFSDSFVLNKFSSDIIADRAPVPPTARVICERHQITVVPVTRVIMT 390

Query: 379 DKKKSFKFYILGLGKEIYAEEYPVS-LFSLC 468
            + +SF FYI+GL +E+Y ++YP+   + LC
Sbjct: 391 RRDRSFSFYIIGLSREVYVKDYPLQWCWGLC 421


>tr|Q9SH87|Q9SH87_ARATH Putative uncharacterized protein At2g38000
           (At2g38000 protein) OS=Arabidopsis thaliana GN=At2g38000
           PE=2 SV=1
          Length = 419

 Score = 94.0 bits (232), Expect = 4e-18
 Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L  +Q+YQC PA  +D   L++FS  VIS RA +P +A V+CERH IS +PVTRV M 
Sbjct: 320 VQLCNTQAYQCTPAYFADSYFLNRFSSEVISLRAEVPPTANVVCERHTISVVPVTRVTME 379

Query: 379 DKKKSFKFYILGLGKEIYAEEYPVSLFSLCGVC 477
           D+ K+F FYI+G GKEIY ++Y  + F   G+C
Sbjct: 380 DRGKAFSFYIIGFGKEIYLKDYYPARF-CWGLC 411


>tr|A7PNZ2|A7PNZ2_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021448001
           PE=4 SV=1
          Length = 489

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/93 (47%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L  +Q++QC PA  +D   L+KFS  VI++R+ +P +ARV+CERH IS +PVTRV MA
Sbjct: 390 VQLCNTQAHQCTPAFFADSFSLNKFSSEVIADRSPVPPTARVVCERHSISVVPVTRVTMA 449

Query: 379 DKKKSFKFYILGLGKEIYAEEYPVSLFSLCGVC 477
            +++SF FYI+G  +E+Y ++Y  S F   G+C
Sbjct: 450 HRRQSFSFYIIGFSREVYLKDYYPSRF-CWGLC 481


>tr|B4FPR2|B4FPR2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 456

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L   Q+YQC PA  +D   L++FS  VI+ R  +P SARVI ERH IS +PVTRV MA
Sbjct: 358 VQLCNIQAYQCTPAFFADSYPLNQFSSEVIASRLPVPPSARVISERHIISVVPVTRVTMA 417

Query: 379 DKKKSFKFYILGLGKEIYAEEYP 447
            +K+SF FY++G  ++++  +YP
Sbjct: 418 RRKQSFSFYVVGYSRDVFIRDYP 440


>tr|A5BQ55|A5BQ55_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001136 PE=4 SV=1
          Length = 467

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 38/77 (49%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L  +Q++QC PA  +D   L+KFS  VI++R+ +P +ARV+CERH IS +PVTRV MA
Sbjct: 333 VQLCNTQAHQCTPAFFADSFXLNKFSSEVIADRSPVPPTARVVCERHSISVVPVTRVTMA 392

Query: 379 DKKKSFKFYILGLGKEI 429
            +++SF FYI+G  +E+
Sbjct: 393 HRRQSFSFYIIGFSREL 409


>tr|Q5W6X4|Q5W6X4_ORYSJ Os05g0316200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0065C11.2 PE=2 SV=1
          Length = 468

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L   Q+YQC PA  +D   L++FS  V++ R  +P SARVI ERH IS +PV RV MA
Sbjct: 370 IQLCNIQAYQCTPAFFADSYQLNQFSSEVVASRLPVPPSARVISERHIISVVPVIRVTMA 429

Query: 379 DKKKSFKFYILGLGKEIYAEEYP 447
            +K+ F FY++G  ++++  +YP
Sbjct: 430 HRKQCFSFYVVGYNRDVFIRDYP 452


>tr|B8AWK5|B8AWK5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19436 PE=4 SV=1
          Length = 468

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
 Frame = +1

Query: 205 MRLYKSQSYQCEPACLSDG--LSKFSGSVISERAFIPESARVICERHEISFIPVTRVVMA 378
           ++L   Q+YQC PA  +D   L++FS  V++ R  +P SARVI ERH IS +PV RV MA
Sbjct: 370 IQLCNIQAYQCTPAFFADSYQLNQFSSEVVASRLPVPPSARVISERHIISVVPVIRVTMA 429

Query: 379 DKKKSFKFYILGLGKEIYAEEYP 447
            +K+ F FY++G  ++++  +YP
Sbjct: 430 HRKQCFSFYVVGYNRDVFIRDYP 452


>tr|Q05AJ0|Q05AJ0_DANRE LOC556397 protein (Fragment) OS=Danio rerio
           GN=LOC556397 PE=2 SV=1
          Length = 378

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = +1

Query: 313 SARVICERHEISFIPVTRVVMADKKKSFKFYILGLGKEIYAEEYPVSLFSLCGVCNI 483
           + R++ +R  I  IP+T+V  A K+K+  FY+ G   ++YA++YP +    C  C+I
Sbjct: 325 TCRILQQRQTIELIPITQVYYAWKEKTHTFYVYGTEHKVYAKDYPAT----CCCCSI 377


>tr|A9V5J5|A9V5J5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=10213 PE=4 SV=1
          Length = 450

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +1

Query: 274 SGSVISERAFIPESARVICERHEISFIPVTRVVMADKKKSFKFYILGLGKEIYAEEYPVS 453
           S  V   R  IP + RV+ +R  +  IP+T V      K F++++ GL  +++A +YP S
Sbjct: 383 SSLVQQHRTIIPSTERVLLQRQTVHAIPITHVTAHWNGKDFQYWMYGLDGKVHAPDYPQS 442

Query: 454 LFSLCGV 474
               C +
Sbjct: 443 CCCGCTI 449


>tr|A8E7M7|A8E7M7_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=CH211-257F16.4-001 PE=4 SV=1
          Length = 412

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +1

Query: 313 SARVICERHEISFIPVTRVVMADKKKSFKFYILGLGKEIYAEEYPVSLFSLCGVCNI 483
           + R++ +R  I  IP+T+V  A K+K+  FY+ G   ++Y ++YP +    C  C+I
Sbjct: 359 TCRILQQRQTIELIPITQVYYAWKEKTHTFYVYGTEHKVYTKDYPAT----CCCCSI 411